Affordable Double-Reference Approach for Simulating Electrified Pt(111)/Water Interfaces

The electrified solid-liquid interface plays an essential role in many renewable energy-related applications, including hydrogen production and utilization. Limitations in computational modelling of the electrified solid-liquid interface have held back the understanding of its properties at the atomic-scale level. In this study, we applied the grand canonical density functional theory (GC-DFT) combined with a hybrid implicit/explicit solvation model to reinvestigate the widely studied electrified platinum-water interface affordably. This GC-DFT method was validated by successfully reproducing the experimental potential of zero charge (PZC) of the Pt(111)-water interface. The calculated capacitances of the Pt(111)-water interface over the applied bias potential closely match the experimental and previous theoretical data from expensive ab-initio molecular dynamics simulations. The structural analysis of the interface models reveals that the applied bias potential can significantly affect the Pt(111)-water atomic interface configurations. The orientation of the water molecules next to the Pt(111) surface is vital for correctly describing the PZC and capacitance. Additionally, our GC-DFT results confirm that the absorption of the hydrogen atom under applied bias potential can significantly affect the electrified interfacial properties. The developed affordable GC-DFT approach, therefore, offers an efficient and accurate means to enhance the understanding of electrified solid-liquid interfaces.Comment: 24 pages, 7 figures, supporting information, still under revie

The RESET project: constructing a European tephra lattice for refined synchronisation of environmental and archaeological events during the last c. 100 ka

This paper introduces the aims and scope of the RESET project (. RESponse of humans to abrupt Environmental Transitions), a programme of research funded by the Natural Environment Research Council (UK) between 2008 and 2013; it also provides the context and rationale for papers included in a special volume of Quaternary Science Reviews that report some of the project's findings. RESET examined the chronological and correlation methods employed to establish causal links between the timing of abrupt environmental transitions (AETs) on the one hand, and of human dispersal and development on the other, with a focus on the Middle and Upper Palaeolithic periods. The period of interest is the Last Glacial cycle and the early Holocene (c. 100-8 ka), during which time a number of pronounced AETs occurred. A long-running topic of debate is the degree to which human history in Europe and the Mediterranean region during the Palaeolithic was shaped by these AETs, but this has proved difficult to assess because of poor dating control. In an attempt to move the science forward, RESET examined the potential that tephra isochrons, and in particular non-visible ash layers (cryptotephras), might offer for synchronising palaeo-records with a greater degree of finesse. New tephrostratigraphical data generated by the project augment previously-established tephra frameworks for the region, and underpin a more evolved tephra 'lattice' that links palaeo-records between Greenland, the European mainland, sub-marine sequences in the Mediterranean and North Africa. The paper also outlines the significance of other contributions to this special volume: collectively, these illustrate how the lattice was constructed, how it links with cognate tephra research in Europe and elsewhere, and how the evidence of tephra isochrons is beginning to challenge long-held views about the impacts of environmental change on humans during the Palaeolithic. © 2015 Elsevier Ltd.RESET was funded through Consortium Grants awarded by the Natural Environment Research Council, UK, to a collaborating team drawn from four institutions: Royal Holloway University of London (grant reference NE/E015905/1), the Natural History Museum, London (NE/E015913/1), Oxford University (NE/E015670/1) and the University of Southampton, including the National Oceanography Centre (NE/01531X/1). The authors also wish to record their deep gratitude to four members of the scientific community who formed a consultative advisory panel during the lifetime of the RESET project: Professor Barbara Wohlfarth (Stockholm University), Professor Jørgen Peder Steffensen (Niels Bohr Institute, Copenhagen), Dr. Martin Street (Romisch-Germanisches Zentralmuseum, Neuwied) and Professor Clive Oppenheimer (Cambridge University). They provided excellent advice at key stages of the work, which we greatly valued. We also thank Jenny Kynaston (Geography Department, Royal Holloway) for construction of several of the figures in this paper, and Debbie Barrett (Elsevier) and Colin Murray Wallace (Editor-in-Chief, QSR) for their considerable assistance in the production of this special volume.Peer Reviewe

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Revisiting the Electrified Pt(111)/Water Interfaces through an Affordable Double-Reference Ab Initio Approach

The electrified solid–liquid interface plays an essential role in many renewable energy-related applications, including hydrogen production and utilization. Limitations in computational modeling of the electrified solid–liquid interface have held back the understanding of its properties at the atomic-scale level. In this study, we applied the grand canonical density functional theory (GC-DFT) combined with a hybrid implicit/explicit solvation model to reinvestigate the widely studied electrified platinum-water interface affordably. The calculated double-layer capacitances of the Pt(111)–water interface over the applied bias potential closely match the experimental and previous theoretical data from expensive ab initio molecular dynamics simulations. The structural analysis of the interface models reveals that the applied bias potential can significantly affect the Pt(111)–water atomic interface configurations. The orientation of the water molecules next to the Pt(111) surface is vital for correctly describing the potential of zero charge (PZC) and capacitance. Additionally, the GC-DFT results confirm that the absorption of the hydrogen atom under applied bias potential can significantly affect the electrified interfacial properties. The presented affordable GC-DFT approach, therefore, offers an efficient and accurate means to enhance the understanding of electrified solid–liquid interfaces

Sensitization of Listeria monocytogenes to Low pH, Organic Acids, and Osmotic Stress by Ethanol

The killing of Listeria monocytogenes following exposure to low pH, organic acids, and osmotic stress was enhanced by the addition of 5% (vol/vol) ethanol. At pH 3, for example, the presence of this agent stimulated killing by more than 3 log units in 40 min of exposure. The rate of cell death at pH 3.0 was dependent on the concentration of ethanol. Thus, while the presence 10% (vol/vol) ethanol at pH 3.0 stimulated killing by more than 3 log units in just 5 min, addition of 1.25% (vol/vol) ethanol resulted in less than 1 log unit of killing in 10 min. The ability of 5% (vol/vol) ethanol to stimulate killing at low pH and at elevated osmolarity was also dependent on the amplitude of the imposed stress, and an increase in the pH from 3.0 to 4.0 or a decrease in the sodium chloride concentration from 25 to 2.5% led to a marked reduction in the effectiveness of 5% (vol/vol) ethanol as an augmentative agent. Combinations of organic acids, low pH, and ethanol proved to be particularly effective bactericidal treatments; the most potent combination was pH 3.0, 50 mM formate, and 5 % (vol/vol) ethanol, which resulted in 5 log units of killing in just 4 min. Ethanol-enhanced killing correlated with damage to the bacterial cytoplasmic membrane