Late Pleistocene-Holocene alluvial stratigraphy of southern Baja California, Mexico

A late Pleistocene to Holocene alluvial stratigraphy has been established for the basins of La Paz and San José del Cabo, in the southern tip of the Baja California peninsula, Mexico. Six discrete alluvial units (Qt1 through Qt6) were differentiated across the region using a combination of geomorphologic mapping, sedimentological analysis, and soil development. These criteria were supported using radiocarbon, optically stimulated luminescence and cosmogenic depth-profile geochronology. Major aggradation started shortly after ∼70 ka (Qt2), and buildup of the main depositional units ended at ∼10 ka (Qt4). After deposition of Qt4, increasing regional incision of older units and the progressive development of a channelized alluvial landscape coincide with deposition of Qt5 and Qt6 units in a second, incisional phase. All units consist of multiple 1–3 m thick alluvial packages deposited as upper-flow stage beds that represent individual storms. Main aggradational units (Qt2-Qt4) occurred across broad (>2 km) channels in the form of sheetflood deposition while incisional stage deposits are confined to channels of ∼0.5–2 km width. Continuous deposition inside the thicker (>10 m) pre-Qt5 units is demonstrated by closely spaced dates in vertical profiles. In a few places, disconformities between these major units are nevertheless evident and indicated by partly eroded buried soils. The described units feature sedimentological traits similar to historical deposits formed by large tropical cyclone events, but also include characteristics of upper-regime flow sedimentation not shown by historical sediments, like long (>10 m) wavelength antidunes and transverse ribs. We interpret the whole sequence as indicating discrete periods during the late Pleistocene and Holocene when climatic conditions allowed larger and more frequent tropical cyclone events than those observed historically. These discrete periods are associated with times when insolation at the tropics was higher than the present-day conditions, determined by precessional cycles, and modulated by the presence of El Niño-like conditions along the tropical and northeastern Pacific. The southern Baja California alluvial record is the first to document a precession-driven alluvial chronology for the region, and it constitutes a strong benchmark for discrimination of direct tropical influence on any other alluvial record in southwestern North America

The natural capital accounting opportunity: Let s really do the numbers

This work was conducted as a part of the “Accounting for U.S. Ecosystem Services at National and Subnational Scales” working group supported by the National Socio-Environmental Synthesis Center under funding received from the National Science Foundation (grant no. DBI-1052875) and the US Geological Survey John Wesley Powell Center for Analysis and Synthesis (grant no. GX16EW00ECSV00)

Induction of T Lymphocytes Specific for Bovine Viral Diarrhea Virus in Calves with Maternal Antibody

Passive antibody to bovine viral diarrhea virus (BVDV) acquired through colostrum intake may interfere with the development of a protective immune response by calves to this virus. The objective of this study was to determine if calves, with a high level of maternal antibody to bovine viral diarrhea virus (BVDV), develop CD4+, CD8+, or γδ T lymphocyte responses to BVDV in the absence of a measurable humoral immune response. Colostrum or milk replacer fed calves were challenged with virulent BVDV at 2-5 weeks of age and/or after maternal antibody had waned. Calves exposed to BVDV while passive antibody levels were high did not mount a measurable humoral immune response to BVDV. However, compared to nonexposed animals, these animals had CD4+, CD8+, and γδ T lymphocytes that were activated by BVDV after exposure to in vitro BVDV. The production of IFNγ by lymphocytes after in vitro BVDV exposure was also much greater in lymphocytes from calves exposed to BVDV in the presence of maternal antibody compared to the nonexposed calves. These data indicate that calves exposed to BVDV while maternal antibody levels are high can develop antigen specific CD4+, CD8+, and γδ T lymphocytes in the absence of an active antibody response. A manuscript presented separately demonstrates that the calves with T lymphocytes specific for BVDV in this study were also protected from virulent BVDV genotype 2 challenge after maternal antibody became undetectable

Measurement of the Bottom-Strange Meson Mixing Phase in the Full CDF Data Set

We report a measurement of the bottom-strange meson mixing phase \beta_s using the time evolution of B0_s -> J/\psi (->\mu+\mu-) \phi (-> K+ K-) decays in which the quark-flavor content of the bottom-strange meson is identified at production. This measurement uses the full data set of proton-antiproton collisions at sqrt(s)= 1.96 TeV collected by the Collider Detector experiment at the Fermilab Tevatron, corresponding to 9.6 fb-1 of integrated luminosity. We report confidence regions in the two-dimensional space of \beta_s and the B0_s decay-width difference \Delta\Gamma_s, and measure \beta_s in [-\pi/2, -1.51] U [-0.06, 0.30] U [1.26, \pi/2] at the 68% confidence level, in agreement with the standard model expectation. Assuming the standard model value of \beta_s, we also determine \Delta\Gamma_s = 0.068 +- 0.026 (stat) +- 0.009 (syst) ps-1 and the mean B0_s lifetime, \tau_s = 1.528 +- 0.019 (stat) +- 0.009 (syst) ps, which are consistent and competitive with determinations by other experiments.Comment: 8 pages, 2 figures, Phys. Rev. Lett 109, 171802 (2012

Network structure of vertebrate scavenger assemblages at the global scale: drivers and ecosystem functioning implications

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Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe