Spatio-temporal modelling of dam deformation using independent component analysis

Modelling dam deformation based on monitoring data plays an important role in the assessment of a dam’s safety. Traditional dam deformation modelling methods generally utilise single monitoring point. It means it is necessary to model for each monitoring point and the spatial correlation between points will not be considered using traditional modelling methods. Spatio-temporal modelling methods provide a way to model the dam deformation with only one functional expression and analyse the stability of dam in its entirety. Independent component analysis (ICA) is a statistical method of blind source separation (BSS) and can separate original signals from mixed observables. In this paper, ICA is introduced as a spatio-temporal modelling method for dam deformation. In this method, the deformation data series of all points were processed using ICA as input signals, and a few output independent signals were used to model. The real data experiment with displacement measurements by wire alignment of Wuqiangxi Dam was conducted and the results show that the output independent signals are correlated with physical responses of causative factors such as temperature and water level respectively. This discovery is beneficial in analysing the dam deformation. In addition, ICA is also an effective dimension reduced method for spatio-temporal modelling in dam deformation analysis applications

Damage Detection Using Blind Source Separation Techniques

Blind source separation (BSS) techniques are applied in many domains since they allow separating a set of signals from their observed mixture without the knowledge (or with very little knowledge) of the source signals or the mixing process. Two particular BSS techniques called Second-Order Blind Identification (SOBI) and Blind Modal Identification (BMID) are considered in this paper for the purpose of structural damage detection or fault diagnosis in mechanical systems. As shown on experimental examples, the BMID method reveals significant advantages. In addition, it is demonstrated that damage detection results may be improved significantly with the help of the block Hankel matrix. The main advantage in this case is that damage detection still remains possible when the number of available sensors is small or even reduced to one. Damage detection is achieved by comparing the subspaces between the reference (healthy) state and a current state through the concept of subspace angle. The efficiency of the methods is illustrated using experimental data

Genome-Wide Identification of Molecular Pathways and Biomarkers in Response to Arsenic Exposure in Zebrafish Liver

10.1371/journal.pone.0068737PLoS ONE87-POLN

The effect of contact angles and capillary dimensions on the burst frequency of super hydrophilic and hydrophilic centrifugal microfluidic platforms, a CFD study.

This paper employs the volume of fluid (VOF) method to numerically investigate the effect of the width, height, and contact angles on burst frequencies of super hydrophilic and hydrophilic capillary valves in centrifugal microfluidic systems. Existing experimental results in the literature have been used to validate the implementation of the numerical method. The performance of capillary valves in the rectangular and the circular microfluidic structures on super hydrophilic centrifugal microfluidic platforms is studied. The numerical results are also compared with the existing theoretical models and the differences are discussed. Our experimental and computed results show a minimum burst frequency occurring at square capillaries and this result is useful for designing and developing more sophisticated networks of capillary valves. It also predicts that in super hydrophilic microfluidics, the fluid leaks consistently from the capillary valve at low pressures which can disrupt the biomedical procedures in centrifugal microfluidic platforms

Antiinflammatory Therapy with Canakinumab for Atherosclerotic Disease

Background: Experimental and clinical data suggest that reducing inflammation without affecting lipid levels may reduce the risk of cardiovascular disease. Yet, the inflammatory hypothesis of atherothrombosis has remained unproved. Methods: We conducted a randomized, double-blind trial of canakinumab, a therapeutic monoclonal antibody targeting interleukin-1β, involving 10,061 patients with previous myocardial infarction and a high-sensitivity C-reactive protein level of 2 mg or more per liter. The trial compared three doses of canakinumab (50 mg, 150 mg, and 300 mg, administered subcutaneously every 3 months) with placebo. The primary efficacy end point was nonfatal myocardial infarction, nonfatal stroke, or cardiovascular death. RESULTS: At 48 months, the median reduction from baseline in the high-sensitivity C-reactive protein level was 26 percentage points greater in the group that received the 50-mg dose of canakinumab, 37 percentage points greater in the 150-mg group, and 41 percentage points greater in the 300-mg group than in the placebo group. Canakinumab did not reduce lipid levels from baseline. At a median follow-up of 3.7 years, the incidence rate for the primary end point was 4.50 events per 100 person-years in the placebo group, 4.11 events per 100 person-years in the 50-mg group, 3.86 events per 100 person-years in the 150-mg group, and 3.90 events per 100 person-years in the 300-mg group. The hazard ratios as compared with placebo were as follows: in the 50-mg group, 0.93 (95% confidence interval [CI], 0.80 to 1.07; P = 0.30); in the 150-mg group, 0.85 (95% CI, 0.74 to 0.98; P = 0.021); and in the 300-mg group, 0.86 (95% CI, 0.75 to 0.99; P = 0.031). The 150-mg dose, but not the other doses, met the prespecified multiplicity-adjusted threshold for statistical significance for the primary end point and the secondary end point that additionally included hospitalization for unstable angina that led to urgent revascularization (hazard ratio vs. placebo, 0.83; 95% CI, 0.73 to 0.95; P = 0.005). Canakinumab was associated with a higher incidence of fatal infection than was placebo. There was no significant difference in all-cause mortality (hazard ratio for all canakinumab doses vs. placebo, 0.94; 95% CI, 0.83 to 1.06; P = 0.31). Conclusions: Antiinflammatory therapy targeting the interleukin-1β innate immunity pathway with canakinumab at a dose of 150 mg every 3 months led to a significantly lower rate of recurrent cardiovascular events than placebo, independent of lipid-level lowering. (Funded by Novartis; CANTOS ClinicalTrials.gov number, NCT01327846.

Microevolution of Neisseria lactamica during nasopharyngeal colonisation induced by controlled human infection.

Neisseria lactamica is a harmless coloniser of the infant respiratory tract, and has a mutually-excluding relationship with the pathogen Neisseria meningitidis. Here we report controlled human infection with genomically-defined N. lactamica and subsequent bacterial microevolution during 26 weeks of colonisation. We find that most mutations that occur during nasopharyngeal carriage are transient indels within repetitive tracts of putative phase-variable loci associated with host-microbe interactions (pgl and lgt) and iron acquisition (fetA promotor and hpuA). Recurrent polymorphisms occurred in genes associated with energy metabolism (nuoN, rssA) and the CRISPR-associated cas1. A gene encoding a large hypothetical protein was often mutated in 27% of the subjects. In volunteers who were naturally co-colonised with meningococci, recombination altered allelic identity in N. lactamica to resemble meningococcal alleles, including loci associated with metabolism, outer membrane proteins and immune response activators. Our results suggest that phase variable genes are often mutated during carriage-associated microevolution

Pan-cancer analysis of whole genomes

Cancer is driven by genetic change, and the advent of massively parallel sequencing has enabled systematic documentation of this variation at the whole-genome scale(1-3). Here we report the integrative analysis of 2,658 whole-cancer genomes and their matching normal tissues across 38 tumour types from the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA). We describe the generation of the PCAWG resource, facilitated by international data sharing using compute clouds. On average, cancer genomes contained 4-5 driver mutations when combining coding and non-coding genomic elements; however, in around 5% of cases no drivers were identified, suggesting that cancer driver discovery is not yet complete. Chromothripsis, in which many clustered structural variants arise in a single catastrophic event, is frequently an early event in tumour evolution; in acral melanoma, for example, these events precede most somatic point mutations and affect several cancer-associated genes simultaneously. Cancers with abnormal telomere maintenance often originate from tissues with low replicative activity and show several mechanisms of preventing telomere attrition to critical levels. Common and rare germline variants affect patterns of somatic mutation, including point mutations, structural variants and somatic retrotransposition. A collection of papers from the PCAWG Consortium describes non-coding mutations that drive cancer beyond those in the TERT promoter(4); identifies new signatures of mutational processes that cause base substitutions, small insertions and deletions and structural variation(5,6); analyses timings and patterns of tumour evolution(7); describes the diverse transcriptional consequences of somatic mutation on splicing, expression levels, fusion genes and promoter activity(8,9); and evaluates a range of more-specialized features of cancer genomes(8,10-18).Peer reviewe

Wetting considerations in capillary rise and imbibition in closed square tubes and open rectangular cross-section channels

The spontaneous capillary-driven filling of microchannels is important for a wide range of applications. These channels are often rectangular in cross-section, can be closed or open, and horizontal or vertically orientated. In this work, we develop the theory for capillary imbibition and rise in channels of rectangular cross-section, taking into account rigidified and non-rigidified boundary conditions for the liquid–air interfaces and the effects of surface topography assuming Wenzel or Cassie-Baxter states. We provide simple interpolation formulae for the viscous friction associated with flow through rectangular cross-section channels as a function of aspect ratio. We derive a dimensionless cross-over time, Tc, below which the exact numerical solution can be approximated by the Bousanquet solution and above which by the visco-gravitational solution. For capillary rise heights significantly below the equilibrium height, this cross-over time is Tc ≈ (3Xe/2)^(2/3) and has an associated dimensionless cross-over rise height Xc ≈ (3Xe/2)^(1/3), where Xe = 1/G is the dimensionless equilibrium rise height and G is a dimensionless form of the acceleration due to gravity. We also show from wetting considerations that for rectangular channels, fingers of a wetting liquid can be expected to imbibe in advance of the main meniscus along the corners of the channel walls. We test the theory via capillary rise experiments using polydimethylsiloxane oils of viscosity 96.0, 48.0, 19.2 and 4.8 mPa s within a range of closed square tubes and open rectangular cross-section channels with SU-8 walls. We show that the capillary rise heights can be fitted using the exact numerical solution and that these are similar to fits using the analytical visco-gravitational solution. The viscous friction contribution was found to be slightly higher than predicted by theory assuming a non-rigidified liquid–air boundary, but far below that for a rigidified boundary, which was recently reported for imbibition into horizontally mounted open microchannels. In these experiments we also observed fingers of liquid spreading along the internal edges of the channels in advance of the main body of liquid consistent with wetting expectations. We briefly discuss the implications of these observations for the design of microfluidic systems