Using ultrasound for the monitoring and control of larval development of gilthead seabream (Sparus aurata) in tanks

In this work, we propose a non-invasive acoustic technique using ultrasound for the monitoring and control of larval development of gilthead seabream (Sparus aurata) in tanks. Biological measurements and target strength (TS) measurements have been carried out using a EK60 Simrad echosounder working at 200 kHz. The experiments have been carried out for three consecutive years in the marine aquaculture plant that Spanish Institute of Oceanography (IEO) has at Mazarron (Murcia, Spain). For the interpretation of the results, backscatter models were considered using the finite element method. The target strength values were evidenced with and without the presence of the developed swimbladder, showing a statistically significant relationship with the standard length, the area of the swimbladder and the percentage of larvae with a swimbladder

Ultrasonic monitoring of early larval development of fish in tanks. Case study: Gilthead seabream (Sparus aurata)

Swimbladder inflation is a significant matter in intensive fish farming, since it is related to larval survival rate and the morphological quality of individuals. In this work, we propose a non-invasive acoustic technique using ultrasound to monitor the swimbladder development of gilthead seabream (Sparus aurata) in tanks. The fundamental hypothesis is that, due to the high acoustic contrast of gas, the swimbladder’s inflation process can be detected by measuring the larvae’s target strength during their early development. Backscatter numerical models using the finite element method, developed from biological measurement data, were applied to evaluate the feasibility of the proposed method. The acoustic measurements were obtained using an EK60 Simrad echosounder working at 200 kHz. The target strength values were evidenced with and without the presence of a developed swimbladder, showing a statistically significant relationship with the swimbladder’s standard length, area and the percentage of larvae with a swimbladder. The experiments were carried out in the Spanish Institute of Oceanography (IEO)’s marine aquaculture plant at Mazarr´on (Murcia, Spain)

Relationship between weight and linear dimensions of Bluefin tuna (Thunnus thynnus) following fattening on western Mediterranean farms

This study presents various models based on formulae relating weight and dimensions (length, height and width) of Bluefin tuna, Thunnus thynnus (L.), fattened in captivity. The main aim of establishing these expressions is to design tools for indirectly predicting the weight of a Bluefin tuna from measurements of one or more dimensions obtained using non- invasive methods such as stereoscopic cameras. Measurements of maximum length, height and width following slaughter were taken of fish fattened in captivity (n = 2078). Different relationships drawn from the dimensions of the tuna against their weight are fitted with part of the data collection and later checked against a reserved sample set. The resulting formu- lae are compared with the formulae most commonly used in the case of wild tuna. The results of this study confirm that, for tuna fattened in cages, the availability of more than one dimension to estimate weight improves the predictive power of the model and reduces error in the estimate.En prensa4,41

Automatic Bluefin Tuna (Thunnus thynnus) Biomass Estimation during Transfers Using Acoustic and Computer Vision Techniques

In this work, acoustic and computer vision techniques are combined to develop an automatic procedure for biomass estimation of tuna during transfers. A side scan sonar working at 200 kHz and a stereo camera, posi- tioned facing towards the surface to record the ventral aspect of fish, are set as acquisition equipment. Moreover, a floating structure has been devised to place the sensors between cages in transfers, creating a transfer canal that allows data acquisition while fish swim from donor to receiving cage. Biomass assessment is computed by counting transferred tuna and sizing a representative sample of the stock. The number of transferred tuna is automatically deduced from acoustic echograms by means of image processing techniques, whereas tuna size is computed from the stereo videos using our automatic computer vision procedure based on a deformable model of the fish ventral silhouette. The results show that the system achieves automatic tuna counting with error below 10%, achieving around 1% error in the best configuration, and automatic tuna sizing of more than 20% of the stock, with highly accurate Snout Fork Length estimation when compared to true data from harvests. These results fulfil the requirements imposed by International Commission for the Conservation of Atlantic Tunas for compliant transfer operations.Versión del editor1,42

Stime della biomassa marina attraverso il metodo acustico: discernimento delle specie e gestione delle risorse ittiche

[EN] Acoustics is the basics of the most important technologies for underwater telecommunication, as well as for target detection and identification in the aquatic media. Multiple frequency measurements are the key for species discrimination and open the door for sustainable fisheries. The development of wider broadband systems and quantitative multi-beam sonars and processing techniques constitute the present challenge for scientists and developers. In parallel, simpler and cost-efficient systems like satellite buoys can offer clue information for marine ecosystem monitoring or target species fisheries.[IT] Acoustics is the basics of the most important technologies for underwater telecommunication, as well as for target detection and identification in the aquatic media. Multiple frequency measurements are the key for species discrimination and open the door for sustainable fisheries. The development of wider broadband systems and quantitative multi-beam sonars and processing techniques constitute the present challenge for scientists and developers. In parallel, simpler and cost-efficient systems like satellite buoys can offer clue information for marine ecosystem monitoring or target species fisheries.We acknowledge the Associazione Italiana di Acustica the invitation and the opportunity of participating in the Symposium The SCIENCE OF ACOUSTICS serving the Food, the Nutrition and the Environment: From protection system to innovative technologies for agriculture and fisheries”, at the EXPO Milan (Italy), in September 2015. E. soliveres acknowledges support of Spanish Government grant AP2009-4459 FPU Subprogram.Espinosa Roselló, V.; Calise, L.; Estruch, VD.; Llorens Escrich, S.; Ordoñez Cebrián, P.; Pérez Arjona, I.; Puig Pons, V.... (2015). Acoustical estimation of fish biomass: species identification and stocks management. Rivista Italiana di Acustica. 39(3):15-21. http://hdl.handle.net/10251/63737S152139

Evidence of a causal and modifiable relationship between kidney function and circulating trimethylamine N-oxide

The host-microbiota co-metabolite trimethylamine N-oxide (TMAO) is linked to increased cardiovascular risk but how its circulating levels are regulated remains unclear. We applied "explainable" machine learning, univariate, multivariate and mediation analyses of fasting plasma TMAO concentration and a multitude of phenotypes in 1,741 adult Europeans of the MetaCardis study. Here we show that next to age, kidney function is the primary variable predicting circulating TMAO, with microbiota composition and diet playing minor, albeit significant, roles. Mediation analysis suggests a causal relationship between TMAO and kidney function that we corroborate in preclinical models where TMAO exposure increases kidney scarring. Consistent with our findings, patients receiving glucose-lowering drugs with reno-protective properties have significantly lower circulating TMAO when compared to propensity-score matched control individuals. Our analyses uncover a bidirectional relationship between kidney function and TMAO that can potentially be modified by reno-protective anti-diabetic drugs and suggest a clinically actionable intervention for decreasing TMAO-associated excess cardiovascular risk

CIBERER : Spanish national network for research on rare diseases: A highly productive collaborative initiative

Altres ajuts: Instituto de Salud Carlos III (ISCIII); Ministerio de Ciencia e Innovación.CIBER (Center for Biomedical Network Research; Centro de Investigación Biomédica En Red) is a public national consortium created in 2006 under the umbrella of the Spanish National Institute of Health Carlos III (ISCIII). This innovative research structure comprises 11 different specific areas dedicated to the main public health priorities in the National Health System. CIBERER, the thematic area of CIBER focused on rare diseases (RDs) currently consists of 75 research groups belonging to universities, research centers, and hospitals of the entire country. CIBERER's mission is to be a center prioritizing and favoring collaboration and cooperation between biomedical and clinical research groups, with special emphasis on the aspects of genetic, molecular, biochemical, and cellular research of RDs. This research is the basis for providing new tools for the diagnosis and therapy of low-prevalence diseases, in line with the International Rare Diseases Research Consortium (IRDiRC) objectives, thus favoring translational research between the scientific environment of the laboratory and the clinical setting of health centers. In this article, we intend to review CIBERER's 15-year journey and summarize the main results obtained in terms of internationalization, scientific production, contributions toward the discovery of new therapies and novel genes associated to diseases, cooperation with patients' associations and many other topics related to RD research

Reduction of exposure of cyclists to urban air pollution

This book collects the main outcomes that were generated during the implementation of the LIFE+RESPIRA project (LIFE13 ENV/ES/000417), carried out in the city of Pamplona, Navarra, Spain. The research was conducted by a cross-functional team made up of more than 30 researchers belonging to three entities: The University of Navarra, the Centre for Energy, Environmental and Technological Research (CIEMAT) and Environmental Management of Navarra (GAN-NIK)

Medidas para reducir la exposición de los ciclistas a los principales contaminantes atmosféricos urbanos

Recoge los principales resultados generados durante la realización del proyecto LIFE+RESPIRA, llevado a cabo en la ciudad de Pamplona (Navarra, España) por un equipo interdisciplinar constituido por más de 30 investigadores pertenecientes a la Universidad de Navarra, el Centro de Investigaciones Energéticas, Medioambientales y Tecnológicas (CIEMAT) y Gestión Ambiental de Navarra (GAN-NIK). El libro, que se ha publicado en castellano y en inglés, se ha dividido en 7 capítulos: 1. ¿Ciudades sostenibles? 2. Exposición de los ciudadanos a la contaminación atmosférica 3. Papel de la vegetación urbana en la calidad del aire 4. Modelos de alta resolución para evaluar la calidad del aire 5. Impactos de la contaminación urbana 6. Movilidad y sostenibilidad urbanas 7. Comunicación y educación ambiental. Este libro pretende ser una guía de utilidad para científicos, gestores y ciudadanos, aportando un conjunto de herramientas que permitan mejorar la calidad de vida de nuestras ciudades. Además, quiere rendir un homenaje a todos los voluntarios ciclistas que han participado en dicho proyecto y que son los verdaderos artífices del mismo, ya que gracias a su dedicación incondicional durante más de dos años, han proporcionado una cantidad ingente de datos sobre la calidad del aire de la ciudad de Pamplona

Pan-cancer analysis of whole genomes

Cancer is driven by genetic change, and the advent of massively parallel sequencing has enabled systematic documentation of this variation at the whole-genome scale(1-3). Here we report the integrative analysis of 2,658 whole-cancer genomes and their matching normal tissues across 38 tumour types from the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA). We describe the generation of the PCAWG resource, facilitated by international data sharing using compute clouds. On average, cancer genomes contained 4-5 driver mutations when combining coding and non-coding genomic elements; however, in around 5% of cases no drivers were identified, suggesting that cancer driver discovery is not yet complete. Chromothripsis, in which many clustered structural variants arise in a single catastrophic event, is frequently an early event in tumour evolution; in acral melanoma, for example, these events precede most somatic point mutations and affect several cancer-associated genes simultaneously. Cancers with abnormal telomere maintenance often originate from tissues with low replicative activity and show several mechanisms of preventing telomere attrition to critical levels. Common and rare germline variants affect patterns of somatic mutation, including point mutations, structural variants and somatic retrotransposition. A collection of papers from the PCAWG Consortium describes non-coding mutations that drive cancer beyond those in the TERT promoter(4); identifies new signatures of mutational processes that cause base substitutions, small insertions and deletions and structural variation(5,6); analyses timings and patterns of tumour evolution(7); describes the diverse transcriptional consequences of somatic mutation on splicing, expression levels, fusion genes and promoter activity(8,9); and evaluates a range of more-specialized features of cancer genomes(8,10-18).Peer reviewe