Leishmaniose tegumentar americana: flebotomíneos de área de transmissão no Norte do Paraná, Brasil

Most of the cases of cutaneous leishmaniasis diagnosed in the laboratory of the State University of Maringá, Paraná, Brazil, are related to areas of northern Paraná State, which have been settled since 40 years age, when the destructions of vast areas of forest in this region was begun. The native vegetation, already, in large part, destroyed is constituted of dense forest of the type found in the transition from tropical to subtropical regions. The landscape is constituted of plateau with a climate of transition from tropical to subtropical and annual mean temperatures of 20°C to 22°C, the mean of the hottest month being superior to 22°C. The native forests are represented by small, sparse patches of vegetation, with some modification in the basins of the rivers Ivaí, Paranapanema and Paraná and their tributaries. In this environment 24 captures of phlebotomines were made - 2 per month from October 1986 to September 1987, between 6 P.M. and 1 A.M. The captures with Shannon trap were made in the outlying forest of Palmital farm. The majority of the 16,496 phlebotomines were classified into 13 species. Lutzomyia whitmani was predominant with 11,188 (67.82%) specimens, followed by Lutzomyia intermedia with 2,900 (17.58%) and Lutzomyia migonei with 1,481 (9.03%). Lutzomyia whitmani and Lutzomyia intermedia have been manifesting great capacity of adaptation in modified environments, where they have played a significant role in transmission of leishmaniasis.Dos casos de leishmaniose tegumentar diagnosticados no Laboratório de Ensino e Pesquisa de Análises Clínicas da Universidade Estadual de Maringá-PR (Brasil), a maioria está relacionada a áreas, no Norte do Paraná, que vem sendo ocupadas desde a década de 1940, quando se iniciou extenso desmatamento naquela Região. A vegetação nativa, já em grande parte destruída, é constituída por mata densa do tipo tropical de transição para subtropical. A paisagem no seu conjunto é de planalto, com clima tropical de transição para subtropical, temperaturas médias anuais entre 20°C e 22°C e média do mês mais quente superior a 22°C. Das florestas nativas restam poucas e esparsas manchas de vegetação, geralmente modificadas, ao longo das bacias dos rios Ivaí, Paranapanema e Paraná, e seus afluentes. Neste ambiente foram feitas 24 capturas de flebotomíneos, 2 por mês, de outubro de 1986 a setembro de 1987, das 18 horas à l hora do dia seguinte. As capturas, com armadilhas de Shannon, foram realizadas às margens de mata modificada, tendo sido classificados 16.496 flebotomíneos, pertencentes na sua quase totalidade a 13 espécies. Observou-se prevalência de Lutzomyia whitmani com 11.188 (67,82%) exemplares, seguido por Lutzomyia intermedia com 2.900 (17,58%) e Lutzomyia migonei com 1.491 (9,03%). Lutzomyia whitmani e Lutzomyia intermedia vêm mostrando grande capacidade de adaptação nos ambientes antrópicos, onde têm destacado papel na transmissão de leishmaniose

Adult culicidae captured in a rural area in southern Brazil

During the period from September 1988 to April 1990, mosquitoes were captured using Shannon light trap and Falcão light traps, in Terra Boa county, in the north of Paraná State, Brazil. The Shannon trap was installed in the outlying modified forest and Falcão traps were installed in the modified forest and domiciliary areas. The prevalence of species was verified and the methods of capture compared.São apresentados os resultados obtidos de coletas de mosquitos, com armadilha luminosa de Shannon, às margens de uma mata modificada, e armadilhas de Falcão na mesma mata e em ecótopos extra-florestais, no Município de Terra Boa, Estado do Paraná, Brasil, de setembro de 1988 a abril de 1990. Verificou-se a prevalência das espécies de culicídeos e compararam-se os dois métodos de coletas

Flebotomíneos em área de transmissão de leishmaniose tegumentar na região norte do Estado do Paraná - Brasil: Variação Sazonal e Atividade Noturna

In two years of phlebotomine captures in a modified forest an appreciable decrease in the size of this insect population has been observed when compared to previous data from the same locality. The captures with the Shannon light trap were made in the outlying forest of Palmital farm in Terra Boa county, Parana State, Brazil. The predominant species were Lutzomyia withmani, Lutzomyia migonei, Lutzomyia intermedius e Lutzomyia fischeri. These insects were active from 6 p.m. to 6 a.m. and the period of greatest activity varied according to the species. These species' densities were higher in the summer and autum months. Environmental modifications may have influenced the observed changes in phlebotomine behavior.No período de dois anos de capturas de flebotomíneos com armadilha luminosa de Shannon, às margens de uma mata residual alterada, na fazenda Palmital, Município de Terra Boa, Estado do Paraná, Brasil, observou-se que a densidade populacional desses insetos diminuiu sensivelmente, quando comparada com resultados anteriores, no mesmo local. As espécies predominantes, Lutzomyia whitmani, Lutzomyia migonei, Lutzomyia intermedius e Lutzomyia fischeri tiveram atividade das 18 às 6h e o pico horário de freqüência variou de acordo com cada espécie. As espécies citadas mostraram maior densidade nos meses de verão e outono. Concluem-se que as alterações introduzidas no ambiente podem ter resultado em mudanças no comportamento dos flebotomíneos

Observations on the behavior of phlebotomines in forest and domiciliary environments in an endemic area of American cutaneous leishmaniasis in southern Brazil

De novembro de 1988 a abril de 1990 capturaram-se 75.637 flebotomíneos, com armadilhas luminosas de Falcão, na fazenda Palmital, Norte do Estado do Paraná, Brasil, resultando quinze espécies. Dos insetos capturados, 95,8% o foram nos ambientes domiciliar e peridomiciliar e os restantes 4,2%, no ambiente florestal. Da totalidade de flebotomíneos, 82,0% foram capturados numa armadilha instalada dentro de um abrigo de galinhas. Dos flebotomíneos capturados em todas as armadilhas, 93,8% eram representados pelas espécies Lutzomyia migonei, Lutzomyia whitmani, Lutzomyia pessoai, Lutzomyia fischeri e Lutzomyia intermedia, todas de relevância na epidemiologia da leishmaniose tegumentar americana. L. migonei prevaleceu numa única armadilha do peridomicílio e nas demais prevaleceu L. whitmani. As densidades mensais desses insetos, obtidas usando-se somente os resultados da armadilha instalada dentro do galinheiro, foram elevadas principalmente nos meses mais quentes e úmidos. No ambiente florestal predominou a acrodendrofilia dos flebotomíneos, pois 87,9% deles foram capturados nas armadilhas instaladas a aproximadamente 10 m do solo, havendo predomínio de L. whitmani, L. fischeri, L. migonei, L. intermedia, Brumptomyia brumpti, L. monticola e L. pessoai. A carência de informações sobre a epidemiologia da leishmaniose no Estado do Paraná indica que são necessários estudos que venham esclarecer quais são as implicações das relações flebotomíneos/animais domésticos na cadeia de transmissão de Leishmania no domicílio e peridomicílio.Between November 1988 and April 1990, 75,637 phlebotomines were captured with the use of Falcão light traps on Palmital farm in the north of Paraná State, Brazil. Fifteen species were represented. The percentage of 95.8% of the insects were captured within the domiciliary area and the remaining 4.2% in the forest environment. The percentage of 62 were captured in one single Falcão light trap installed in a henhouse, where Blancasmya migonei predominated. In all the other traps Psychodopygus whilmani was predominant. B. migonei, P. whitmani, Pintomyia pessoai, Pintomyia fischeri and Psychodopygus intermedius are highly significant vectors of American cutaneous leishmaniasis and represented 93.8% of all phlebotomines captured with 10 Falcão light traps. The monthly densities of these insects were obtained from one Falcão light trap installed in a henhouse and increased especially in the warmer and more humid months. In the forest environment the phlebotomines were captured principally in traps installed about 10 meters above the ground and P. whilmani, B. migonei, P. intermedius, Brumptomyia brumpti, Psychodopygus monticola and P. pessoai were the dominant species. The need for information about the epidemiology of American cutaneous leishmaniasis calls for further investigation with a view to clarifying the implications of the relationship between the phlebotomines and domestic animals in the Leishmania cycle of transmission in domiciliary areas

Culicídeos do lago de Itaipu, no rio Paraná, Sul do Brasil

Mosquito catches were made in Guaíra county, Paraná State, southern Brazil, in the vicinity of Itaipu dam, from January to December 1991. The catches were made with a Shannon light trap and human bait. The Shannon light trap was installed beside the highway that used, formerly, to lead to the Sete Quedas cataracts and the human bait was used in the urban area. Data about the Culicidae fauna were obtained as to predominant species, seasonal variation, time of highest density and affinity with human host. Forty-one species were identified as belonging to the Anopheles, Aedes, Aedomyia, Coquillettidia, Culex, Mansonia, Psorophora and Uranotaenia genera. With the Shannon light trap 21,280 mosquitoes were caught and with human bait 1,010. In the catches made with the Shannon light trap, Coquillettidia shannoni, Mansonia humeralis, Anopheles trianulatus, Aedes scapularis and Anopheles albitarsis accounted for 82.78% of all mosquitoes taken. In the catches made on human bait the highest densities of these mosquitoes occurred between 7 p.m. and 9 p.m. Aedes scapularis, Mansonia humeralis and Anopheles albitarsis represented 91,21% of all mosquitoes caugth with human bait. The highest densities of Aedes scapularis, on human bait, were found between 8 p.m. and 9 p.m. and those of Mansonia humeralis and Anopheles albitarsis between 6 p.m. and 7 p.m. Among the genera caught with the Shannon ligth trap Coquillettidia shannoni, Mansonia humeralis and Anopheles albitarsis were most frequent in April, Anopheles triannulatus in January and Aedes scapularis in February.De janeiro a dezembro de 1991 foram realizadas capturas mensais de culicídeos, no Município de Guaíra, Estado do Paraná (Brasil), na margem esquerda do lago de Itaipu, ao lado da via de acesso que conduzia aos Saltos das Sete Quedas, usando-se armadilha luminosa de Shannon, e isca humana em área urbanizada. Obtiveram-se informações sobre a fauna culicidiana, as espécies prevalentes, a variação sazonal, o horário de maior densidade e a afinidade dos mosquitos em relação ao hospedeiro humano. Foram identificadas 41 espécies de culicídeos dos gêneros Anopheles, Aedes, Aedomyia, Coquillettidia, Culex, Mansonia, Psorophora e Uranotaenia. Capturaram-se 21.280 mosquitos em armadilha de Shannon e 1.010 em isca humana. As espécies mais freqüentes em armadilha de Shannon - Coquillettidia shannoni, Mansonia humeralis, Anopheles triannulatus, Aedes scapularis e Anopheles albitarsis - perfizeram 82,78% dos mosquitos capturados. Em isca humana Aedes scapularís, Mansonia humeralis e Anopheles albitarsis, somaram 91,21% dos insetos capturados. Em armadilha de Shannon o horário de maior atividade das espécies prevalentes foi entre 19 e 22 h. Em isca humana Aedes scapularis teve maior densidade das 20 às 21 h, enquanto Mansonia humeralis e Anopheles albitarsis prevaleceram das 18 às 19 h. Dentre as espécies prevalentes em armadilha de Shannon, Coquillettidia shannoni, Mansonia humeralis e Anopheles albitarsis tiveram pico de atividade no mês de abril, Anopheles triannulatus em janeiro e Aedes scapularis em fevereiro

Mosquitos de ambientes peri e extradomiciliares na região sul do Brasil

Mosquitoes were collected on Sonho Real farm, Querência do Norte county, Paraná State, Brazil, using human bait and Falcão traps between June 1989 and May 1990. The fauna composition, monthly density, hours of major density, human attraction and presence of mosquitoes in domestic animal shelters were investigated. 5,923 mosquitoes of the genera Aedes, Aedomyia, Anopheles, Coquillettidea, Culex, Mansonia, Psorophora, Sabethes and Uranotaenia were collected. 33 species of mosquitoes were identified and among them Aedes scapularis, Anopheles albitarsis, Aedomyia squamipennis, Coquillettidea lynchi, Mansonia titillans e Coquillettidea venezuelensis were predominant. All these species were captured mainly on human bait, except Aedomyia squamipennis that was captured in domestic animal shelters. With regard to all the mosquitoes captured (5,923), their major period of activity was between 18 and 19 hours and April was the month of greatest density.Durante um ano de coletas de culicídeos no Município de Querência do Norte, no Estado do Paraná, Brasil, utilizando-se isca humana e armadilhas de Falcão, investigou-se a composição faunística, a sazonalidade, o horário de maior densidade, a afinidade ao hospedeiro humano c a presença desses dípteros em abrigos de animais domésticos. De junho de 1989 a maio de 1990 foram coletados 5.923 mosquitos dos gêneros Aedes, Aedomyia, Coquillettidia, Culex, Mansonia, Psorophora, Sabethes e Uranotaenia. Identificaram-se 32 espécies de culícideos, dentre as quais Aedes scapularis, Anopheles albitarsis, Aedomyia squamipennis, Coquillettidia lynchi, Mansonia titillans e Coquillettidia venezuelensis tiveram maior prevalência, tendo sido capturados em grande número em isca humana, exceto Aedomyia squamipennis que compareceu sobretudo em abrigos de animais domésticos. O horário de maior atividade foi entre 18 e 19 horas e o mês de maior densidade foi o de abril, considerando-se o conjunto dos insetos capturados

Pan-cancer analysis of whole genomes

Cancer is driven by genetic change, and the advent of massively parallel sequencing has enabled systematic documentation of this variation at the whole-genome scale(1-3). Here we report the integrative analysis of 2,658 whole-cancer genomes and their matching normal tissues across 38 tumour types from the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA). We describe the generation of the PCAWG resource, facilitated by international data sharing using compute clouds. On average, cancer genomes contained 4-5 driver mutations when combining coding and non-coding genomic elements; however, in around 5% of cases no drivers were identified, suggesting that cancer driver discovery is not yet complete. Chromothripsis, in which many clustered structural variants arise in a single catastrophic event, is frequently an early event in tumour evolution; in acral melanoma, for example, these events precede most somatic point mutations and affect several cancer-associated genes simultaneously. Cancers with abnormal telomere maintenance often originate from tissues with low replicative activity and show several mechanisms of preventing telomere attrition to critical levels. Common and rare germline variants affect patterns of somatic mutation, including point mutations, structural variants and somatic retrotransposition. A collection of papers from the PCAWG Consortium describes non-coding mutations that drive cancer beyond those in the TERT promoter(4); identifies new signatures of mutational processes that cause base substitutions, small insertions and deletions and structural variation(5,6); analyses timings and patterns of tumour evolution(7); describes the diverse transcriptional consequences of somatic mutation on splicing, expression levels, fusion genes and promoter activity(8,9); and evaluates a range of more-specialized features of cancer genomes(8,10-18).Peer reviewe

Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing

Chromothripsis is a mutational phenomenon characterized by massive, clustered genomic rearrangements that occurs in cancer and other diseases. Recent studies in selected cancer types have suggested that chromothripsis may be more common than initially inferred from low-resolution copy-number data. Here, as part of the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA), we analyze patterns of chromothripsis across 2,658 tumors from 38 cancer types using whole-genome sequencing data. We find that chromothripsis events are pervasive across cancers, with a frequency of more than 50% in several cancer types. Whereas canonical chromothripsis profiles display oscillations between two copy-number states, a considerable fraction of events involve multiple chromosomes and additional structural alterations. In addition to non-homologous end joining, we detect signatures of replication-associated processes and templated insertions. Chromothripsis contributes to oncogene amplification and to inactivation of genes such as mismatch-repair-related genes. These findings show that chromothripsis is a major process that drives genome evolution in human cancer

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

Funder: NCI U24CA211006Abstract: The Cancer Genome Atlas (TCGA) and International Cancer Genome Consortium (ICGC) curated consensus somatic mutation calls using whole exome sequencing (WES) and whole genome sequencing (WGS), respectively. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2,658 cancers across 38 tumour types, we compare WES and WGS side-by-side from 746 TCGA samples, finding that ~80% of mutations overlap in covered exonic regions. We estimate that low variant allele fraction (VAF < 15%) and clonal heterogeneity contribute up to 68% of private WGS mutations and 71% of private WES mutations. We observe that ~30% of private WGS mutations trace to mutations identified by a single variant caller in WES consensus efforts. WGS captures both ~50% more variation in exonic regions and un-observed mutations in loci with variable GC-content. Together, our analysis highlights technological divergences between two reproducible somatic variant detection efforts