Pan-cancer analysis of whole genomes

Cancer is driven by genetic change, and the advent of massively parallel sequencing has enabled systematic documentation of this variation at the whole-genome scale(1-3). Here we report the integrative analysis of 2,658 whole-cancer genomes and their matching normal tissues across 38 tumour types from the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA). We describe the generation of the PCAWG resource, facilitated by international data sharing using compute clouds. On average, cancer genomes contained 4-5 driver mutations when combining coding and non-coding genomic elements; however, in around 5% of cases no drivers were identified, suggesting that cancer driver discovery is not yet complete. Chromothripsis, in which many clustered structural variants arise in a single catastrophic event, is frequently an early event in tumour evolution; in acral melanoma, for example, these events precede most somatic point mutations and affect several cancer-associated genes simultaneously. Cancers with abnormal telomere maintenance often originate from tissues with low replicative activity and show several mechanisms of preventing telomere attrition to critical levels. Common and rare germline variants affect patterns of somatic mutation, including point mutations, structural variants and somatic retrotransposition. A collection of papers from the PCAWG Consortium describes non-coding mutations that drive cancer beyond those in the TERT promoter(4); identifies new signatures of mutational processes that cause base substitutions, small insertions and deletions and structural variation(5,6); analyses timings and patterns of tumour evolution(7); describes the diverse transcriptional consequences of somatic mutation on splicing, expression levels, fusion genes and promoter activity(8,9); and evaluates a range of more-specialized features of cancer genomes(8,10-18).Peer reviewe

Building Organizational Insight: Strategy and Organization

In this chapter we focus on the organizational insight as a pivotal element in understanding the processes required to realize and achieve interrelationships among businesses. We devote particular attention to the element of synergy creation, horizontal strategy, and organizational coordination mechanisms. We do so, because at the corporate level, the development, or expansion, toward new businesses recalls the need for an organizational adaptation. Following Porter (\u201cCompetitive advantage: creating and sustaining superior performance,\u201d Free Press, New York, 1985), among the possible sources of competitive advantage, lies the potential to develop interrelationships because of the different businesses or products that exist in the organization. Organizations shall therefore aim at developing interrelationships in order to allow the firm to avail of synergies, focusing on horizontal strategies to develop and maintain a competitive advantage. The organizational context\u2014in terms of design, culture, and behavior\u2014can motivate the organization to pursue interrelationships beyond other mere combinations of businesses, as synergies can produce a combined return on resources that is greater than the sum of individual parts

Utilização de filmes plásticos e comestíveis na conservação pós-colheita de melão amarelo Utilization of PVC film and edible films to extend the postharvest conservation of yellow melons

Este trabalho teve como objetivo prolongar a vida pós-colheita de melões do tipo amarelo cv. AF-682, por meio da atmosfera modificada obtida com filme plástico de PVC e filmes comestíveis à base de cera de carnaúba (50%) e fécula de mandioca (1, 2 e 3%). Para o revestimento dos frutos com embalagem plástica utilizou-se filme de PVC com 10 mm de espessura, aderente e esticável, colocado em camada única, na superfície de cada fruto. Após serem revestidos pelos filmes os frutos foram armazenados em temperatura ambiente de 29± 2ºC e 64±1% UR por 20 dias, sendo em intervalos de cinco dias submetidos às avaliações: massa individual, firmeza da polpa, teor de sólidos solúveis totais, acidez titulável e pH. Utilizou-se delineamento inteiramente casualizado com seis repetições em esquema fatorial 6x4, sendo 6 tratamentos de conservação e 4 períodos de armazenamento. Nenhum dos tratamentos avaliados é recomendável para aumentar a conservação pós-colheita de melão amarelo. Os frutos revestidos com fécula de mandioca a 3% e filme de PVC apresentaram processo iniciais característicos de fermentação e podridão a partir de 15 dias de armazenamento em temperatura ambiente.<br>This work aimed to extend the postharvest life of yellow melons cv. AF-682 through modified atmosphere techniques obtained with PVC film and edible films such as carnauba wax (50%) and cassava starch (1, 2 and 3%). Fruits were wrapped with one layer of adherent and stretchable PVC film with 10 mm width. After covering, fruits were stored at 29± 2ºC and 64±1% UR for 20 days. At a 5-day interval, fruits were evaluated for individual weight, pulp firmness, total soluble solids content, titratable acidity and pH. The trial was carried out in a complete randomized design, with six replications in a factorial scheme 6x4, with six treatments and four storage periods. The use of PVC film and edible films are not recommended to extend postharvest conservation of yellow melon cv. AF-682. The fruits covered with 3% of cassava starch and PVC film presented initial process of fermentation and rot after 15 days of storage at 29ºC

Effect of carboxymethyl cellulose concentration on physical properties of biodegradable cassava starch-based films

<p>Abstract</p> <p>Background</p> <p>Cassava starch, the economically important agricultural commodity in Thailand, can readily be cast into films. However, the cassava starch film is brittle and weak, leading to inadequate mechanical properties. The properties of starch film can be improved by adding plasticizers and blending with the other biopolymers.</p> <p>Results</p> <p>Cassava starch (5%w/v) based films plasticized with glycerol (30 g/100 g starch) were characterized with respect to the effect of carboxymethyl cellulose (CMC) concentrations (0, 10, 20, 30 and 40%w/w total solid) and relative humidity (34 and 54%RH) on the mechanical properties of the films. Additionally, intermolecular interactions were determined by Fourier transform infrared spectroscopy (FT-IR), melting temperature by differential scanning calorimetry (DSC), and morphology by scanning electron microscopy (SEM). Water solubility of the films was also determined. Increasing concentration of CMC increased tensile strength, reduced elongation at break, and decreased water solubility of the blended films. FT-IR spectra indicated intermolecular interactions between cassava starch and CMC in blended films by shifting of carboxyl (C = O) and OH groups. DSC thermograms and SEM micrographs confirmed homogeneity of cassava starch-CMC films.</p> <p>Conclusion</p> <p>The addition of CMC to the cassava starch films increased tensile strength and reduced elongation at break of the blended films. This was ascribed to the good interaction between cassava starch and CMC. Cassava starch-CMC composite films have the potential to replace conventional packaging, and the films developed in this work are suggested to be suitable for low moisture food and pharmaceutical products.</p