8 research outputs found
Pan-cancer analysis of whole genomes
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- Wintersinger
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- Yachida
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- Yang
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- Yao
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- z ah
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- Zaikova
- Zapatka
- zd Gershenwald
- Zenklusen
- Zeps
- zf Ghossein
- Zhang
- Zhang
- Zhang
- Zhang
- Zhang
- Zhang
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- Zhao
- Zheng
- Zhou
- Zhou
- Zhu
- Zhu
- zi zj
- zm Jayaseelan
- Zou
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- Field of study
Cancer is driven by genetic change, and the advent of massively parallel sequencing has enabled systematic documentation of this variation at the whole-genome scale(1-3). Here we report the integrative analysis of 2,658 whole-cancer genomes and their matching normal tissues across 38 tumour types from the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA). We describe the generation of the PCAWG resource, facilitated by international data sharing using compute clouds. On average, cancer genomes contained 4-5 driver mutations when combining coding and non-coding genomic elements; however, in around 5% of cases no drivers were identified, suggesting that cancer driver discovery is not yet complete. Chromothripsis, in which many clustered structural variants arise in a single catastrophic event, is frequently an early event in tumour evolution; in acral melanoma, for example, these events precede most somatic point mutations and affect several cancer-associated genes simultaneously. Cancers with abnormal telomere maintenance often originate from tissues with low replicative activity and show several mechanisms of preventing telomere attrition to critical levels. Common and rare germline variants affect patterns of somatic mutation, including point mutations, structural variants and somatic retrotransposition. A collection of papers from the PCAWG Consortium describes non-coding mutations that drive cancer beyond those in the TERT promoter(4); identifies new signatures of mutational processes that cause base substitutions, small insertions and deletions and structural variation(5,6); analyses timings and patterns of tumour evolution(7); describes the diverse transcriptional consequences of somatic mutation on splicing, expression levels, fusion genes and promoter activity(8,9); and evaluates a range of more-specialized features of cancer genomes(8,10-18).Peer reviewe
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- Rubinsztein DC
- Ruckdeschel K
- Rucker EB 3rd
- Rudich A
- Rudolf E
- Ruiz-Opazo N
- Russo R
- Rusten TE
- Ryan KM
- Ryter SW
- S\ue1nchez-Alc\ue1zar JA
- S\ue1nchez-Prieto R
- Sabatini DM
- Sadoshima J
- Saha T
- Saitoh T
- Sakagami H
- Sakai Y
- Salekdeh GH
- Salomoni P
- Salvaterra PM
- Salvesen G
- Salvioli R
- Sanchez AM
- Sandri M
- Sankar U
- Sansanwal P
- Santambrogio L
- Saran S
- Sarkar S
- Sarwal M
- Sasakawa C
- Sasnauskiene A
- Sass M
- Sato K
- Sato M
- Sch\ue4tzl HM
- Sch\ufcller C
- Schapira AH
- Scharl M
- Scheper W
- Schiaffino S
- Schneider C
- Schneider ME
- Schneider-Stock R
- Schoenlein PV
- Schorderet DF
- Schwartz GK
- Scorrano L
- Sealy L
- Seglen PO
- Segura-Aguilar J
- Seiliez I
- Seleverstov O
- Sell C
- Seo JB
- Separovic D
- Setaluri V
- Setoguchi T
- Settembre C
- Shacka JJ
- Shanmugam M
- Shapiro IM
- Shaulian E
- Shaw RJ
- Shelhamer JH
- Shen HM
- Shen WC
- Sheng ZH
- Shi Y
- Shibuya K
- Shidoji Y
- Shieh JJ
- Shih CM
- Shimada Y
- Shimizu S
- Shintani T
- Shirihai OS
- Shore GC
- Sibirny AA
- Sidhu SB
- Sikorska B
- Silva-Zacarin E
- Silva-Zacarin EC
- Simmons A
- Simon AK
- Simon HU
- Simone C
- Simonsen A
- Sinclair DA
- Singh R
- Sinha D
- Sinicrope FA
- Sirko A
- Siu PM
- Sivridis E
- Skop V
- Skulachev VP
- Slack RS
- Smaili SS
- Smith DR
- Soengas MS
- Soldati T
- Song X
- Sood AK
- Soong TW
- Sotgia F
- Spector SA
- Spies CD
- Springer W
- Srinivasula SM
- Stefanis L
- Steffan JS
- Stendel R
- Stenmark H
- Stephanou A
- Stern ST
- Sternberg C
- Stork B
- Str\ue5lfors P
- Subauste CS
- Sui X
- Sulzer D
- Sun SY
- Sun J
- Sun ZJ
- Sung JJ
- Suzuki K
- Suzuki T
- Swanson MS
- Swanton C
- Sweeney ST
- Sy LK
- Szabadkai G
- T\uf6nges L
- Tabas I
- Taegtmeyer H
- Tafani M
- Tak\ue1cs-Vellai K
- Takano Y
- Takegawa K
- Takemura G
- Takeshita F
- Talbot NJ
- Tan KS
- Tanaka K
- Tanaka K
- Tang D
- Tang D
- Tanida I
- Tannous BA
- Tavernarakis N
- Taylor GA
- Taylor GS
- Taylor JP
- Terada LS
- Terman A
- Tettamanti G
- Thevissen K
- Thompson CB
- Thorburn A
- Thumm M
- Tian F
- Tian Y
- Tocchini-Valentini G
- Tolkovsky AM
- Tomino Y
- Tooze SA
- Tournier C
- Tower J
- Towns R
- Trajkovic V
- Travassos LH
- Tsai TF
- Tschan MP
- Tsubata T
- Tsung A
- Turk B
- Turner LS
- Tyagi SC
- Uchiyama Y
- Ueno T
- Umekawa M
- Umemiya-Shirafuji R
- Unni VK
- Vaccaro MI
- Valente EM
- Van den Berghe G
- van der Klei IJ
- van Doorn W
- van Dyk LF
- van Egmond M
- van Grunsven LA
- Vandenabeele P
- Vandenberghe WP
- Vanhorebeek I
- Vaquero EC
- Velasco G
- Vellai T
- Vicencio JM
- Vierstra RD
- Vila M
- Vindis C
- Viola G
- Viscomi MT
- Voitsekhovskaja OV
- von Haefen C
- Votruba M
- Wada K
- Wade-Martins R
- Walker CL
- Walsh CM
- Walter J
- Wan XB
- Wang ZC
- Wang A
- Wang C
- Wang D
- Wang F
- Wang F
- Wang G
- Wang H
- Wang HD
- Wang HG
- Wang J
- Wang K
- Wang M
- Wang RC
- Wang X
- Wang X
- Wang Y
- Wang YJ
- Wang Z
- Wang Z
- Wansink DG
- Ward DM
- Watada H
- Waters SL
- Webster P
- Wei L
- Weihl CC
- Weiss WA
- Welford SM
- Wen LP
- Whitehouse CA
- Whitton JL
- Whitworth AJ
- Wileman T
- Wiley JW
- Wilkinson S
- Willbold D
- Williams RL
- Williamson PR
- Wouters BG
- Wu C
- Wu DC
- Wu WK
- Wyttenbach A
- Xavier RJ
- Xi Z
- Xia P
- Xiao G
- Xie Z
- Xie Z
- Xu DZ
- Xu J
- Xu L
- Xu X
- Yamamoto A
- Yamamoto A
- Yamashina S
- Yamashita M
- Yan X
- Yanagida M
- Yang DS
- Yang E
- Yang JM
- Yang SY
- Yang W
- Yang WY
- Yang Z
- Yao MC
- Yao TP
- Yeganeh B
- Yen WL
- Yin JJ
- Yin XM
- Yoo OJ
- Yoon G
- Yoon SY
- Yorimitsu T
- Yoshikawa Y
- Yoshimori T
- Yoshimoto K
- You HJ
- Youle RJ
- Younes A
- Yu SW
- Yu L
- Yu L
- Yu WH
- Yuan ZM
- Yue Z
- Yun CH
- Yuzaki M
- Zabirnyk O
- Zacks D
- Zacksenhaus E
- Zaffaroni N
- Zakeri Z
- Zeh HJ 3rd
- Zeitlin SO
- Zhang HL
- Zhang H
- Zhang J
- Zhang JP
- Zhang L
- Zhang L
- Zhang MY
- Zhang XD
- Zhao M
- Zhao Y
- Zhao YF
- Zhao ZJ
- Zheng X
- Zhivotovsky B
- Zhong Q
- Zhou CZ
- Zhu C
- Zhu WG
- Zhu X
- Zhu XF
- Zhu Y
- Zoladek T
- Zong WX
- Zorzano A
- Zschocke J
- Zuckerbraun B.
- Publication venue
- Publication date
- 01/01/2012
- Field of study
Guidelines for the use and interpretation of assays for monitoring autophagy.
- Author
- Abdalla Fc
- Abeliovich H
- Abraham Rt
- Acevedo-Arozena A
- Adeli K
- Agholme L
- Agnello M
- Agostinis P
- Aguirre-Ghiso Ja
- Ahn Hj
- Ait-Mohamed O
- Ait-Si-Ali S
- Akematsu T
- Akira S
- Al-Younes Hm
- Al-Zeer Ma
- Albert Ml
- Albin Rl
- Alegre-Abarrategui J
- Aleo Mf
- Alirezaei M
- Almasan A
- Almonte-Becerril M
- Amano A
- Amaravadi R
- Amarnath S
- Amer Ao
- Anantharam V
- Andrieu-Abadie N
- Ann Dk
- Anoopkumar-Dukie S
- Aoki H
- Apostolova N
- Arancia G
- Aris Jp
- Asanuma K
- Asare Ny
- Ashida H
- Askanas V
- Askew Ds
- Auberger P
- B\ue1nhegyi G
- B\ue9chet Dm
- Baba M
- Backues Sk
- Baehrecke Eh
- Bahr Ba
- Bai Xy
- Bailly Y
- Baiocchi R
- Baldini G
- Balduini W
- Ballabio A
- Bamber Ba
- Bampton Et
- Bartholomew Cr
- Bassham Dc
- Bast RC Jr
- Batoko H
- Bay Bh
- Beau I
- Begley Tj
- Behl C
- Behrends C
- Bekri S
- Bellaire B
- Bendall Lj
- Benetti L
- Berliocchi L
- Bernardi H
- Bernassola F
- Besteiro S
- Bhatia-Kissova I
- Bi X
- Biard-Piechaczyk M
- Blum Js
- Boise Lh
- Bonaldo P
- Boone Dl
- Bornhauser Bc
- Bortoluci Kr
- Bossis I
- Bost F
- Bourquin Jp
- Boya P
- Boyer-Guittaut M
- Bozhkov Pv
- Brady Nr
- Brancolini C
- Brech A
- Brenman Je
- Brennand A
- Bresnick Eh
- Brest P
- Bridges D
- Bristol Ml
- Brookes Ps
- Brown Ej
- Brumell Jh
- Brunetti-Pierri N
- Brunk Ut
- Bulman De
- Bultman Sj
- Bultynck G
- Burbulla Lf
- Bursch W
- Butchar Jp
- Buzgariu W
- Bydlowski Sp
- Cadwell K
- Cahov\ue1 M
- Cai D
- Cai J
- Cai Q
- Calabretta B
- Calvo-Garrido J
- Camougrand N
- Campanella M
- Campos-Salinas J
- Candi E
- Cao L
- Caplan Ab
- Carding Sr
- Cardoso Sm
- Carew Js
- Carlin Cr
- Carmignac V
- Carneiro La
- Carra S
- Caruso Ra
- Casari G
- Casas C
- Castino R
- Cebollero E
- Cecconi F
- Celli J
- Chaachouay H
- Chae Hj
- Chai Cy
- Chan Dc
- Chan Ey
- Chang Rc
- Che Cm
- Chen Cc
- Chen Gc
- Chen Gq
- Chen M
- Chen Q
- Chen Ss
- Chen W
- Chen X
- Chen X
- Chen X
- Chen Y
- Chen Y
- Chen Yg
- Chen Yj
- Chen Z
- Cheng A
- Cheng Ch
- Cheng Y
- Cheong H
- Cheong Jh
- Cherry S
- Chess-Williams R
- Cheung Zh
- Chevet E
- Chiang Hl
- Chiarelli R
- Chiba T
- Chin Ls
- Chiou Sh
- Chisari Fv
- Cho Ch
- Cho Dh
- Choi Am
- Choi D
- Choi Ks
- Choi Me
- Chouaib S
- Choubey D
- Choubey V
- Chu Ct
- Chuang Th
- Chueh Sh
- Chun T
- Chwae Yj
- Chye Ml
- Ciarcia R
- Ciriolo Mr
- Clague Mj
- Clark Rs
- Clarke Pg
- Clarke R
- Codogno P
- Coller Ha
- Colombo Mi
- Comincini S
- Condello M
- Condorelli F
- Cookson Mr
- Coombs Gh
- Coppens I
- Corbalan R
- Cossart P
- Costelli P
- Costes S
- Coto-Montes A
- Couve E
- Coxon Fp
- Cregg Jm
- Crespo Jl
- Cronj\ue9 Mj
- Cuervo Am
- Cullen Jj
- Czaja Mj
- D'Amelio M
- D\uedaz-Araya G
- D\uedaz-Laviada I
- Darfeuille-Michaud A
- Davids Lm
- Davies Fe
- De Felici M
- de Groot JF
- de Haan CA
- De Martino L
- De Milito A
- De Tata V
- Debnath J
- Degterev A
- Dehay B
- Delbridge Lm
- Demarchi F
- Deng Yz
- Dengjel J
- Dent P
- Denton D
- Deretic V
- Desai Sd
- Devenish Rj
- Di Gioacchino M
- Di Paolo G
- Di Pietro C
- Diaz-Meco Mt
- Diaz-Nido J
- Dikic I
- Dinesh-Kumar Sp
- Ding Wx
- Distelhorst Cw
- Diwan A
- Djavaheri-Mergny M
- Dokudovskaya S
- Dong Z
- Dorsey Fc
- Dosenko V
- Dowling Jj
- Doxsey S
- Dreux M
- Drew Me
- Duan Q
- Duchosal Ma
- Duff K
- Dugail I
- Durbeej M
- Duszenko M
- Edelstein Cl
- Edinger Al
- Egea G
- Eichinger L
- Eissa Nt
- Ekmekcioglu S
- El-Deiry Ws
- Elazar Z
- Elgendy M
- Ellerby Lm
- Eng Ke
- Engelbrecht Am
- Engelender S
- Erenpreisa J
- Escalante R
- Esclatine A
- Eskelinen El
- Espert L
- Espina V
- F\ue9s\ufcs L
- Fan H
- Fan J
- Fan Qw
- Fan Z
- Fang S
- Fang Y
- Fanto M
- Fanzani A
- Farkas T
- Farr\ue9 Jc
- Faure M
- Fechheimer M
- Feng Cg
- Feng J
- Feng Q
- Feng Y
- Feuer R
- Figueiredo-Pereira Me
- Fimia Gm
- Fingar Dc
- Finkbeiner S
- Finkel T
- Finley Kd
- Fiorito F
- Fisher Ea
- Fisher Pb
- Flajolet M
- Florez-McClure Ml
- Florio S
- Fon Ea
- Fornai F
- Fortunato F
- Fotedar R
- Fowler Dh
- Fox Hs
- Franco R
- Frankel Lb
- Fransen M
- Fuentes Jm
- Fueyo J
- Fujii J
- Fujisaki K
- Fujita E
- Fukuda M
- Furukawa Rh
- Gaestel M
- Gailly P
- Gajewska M
- Galliot B
- Galy V
- Ganesh S
- Ganetzky B
- Ganley Ig
- Gao Fb
- Gao Gf
- Gao J
- Garcia L
- Garcia-Manero G
- Garcia-Marcos M
- Garmyn M
- Gartel Al
- Gatti E
- Gautel M
- Gawriluk Tr
- Gegg Me
- Geng J
- Germain M
- Gestwicki Je
- Gewirtz Da
- Ghavami S
- Ghosh P
- Giammarioli Am
- Giatromanolaki An
- Gibson Sb
- Gilkerson Rw
- Ginger Ml
- Ginsberg Hn
- Golab J
- Goligorsky Ms
- Golstein P
- Gomez-Manzano C
- Goncu E
- Gongora C
- Gonz\ue1lez-Est\ue9vez C
- Gonz\ue1lez-Polo Ra
- Gonzalez Cd
- Gonzalez R
- Gonzalez-Rey E
- Gorbunov Nv
- Gorski S
- Goruppi S
- Gottlieb Ra
- Gozuacik D
- Granato Ge
- Grant Gd
- Green Kn
- Gregorc A
- Gros F
- Grose C
- Grunt Tw
- Gual P
- Guan Jl
- Guan Kl
- Guichard Sm
- Gukovskaya As
- Gukovsky I
- Gunst J
- Gustafsson Ab
- H\ue9bert Mj
- H\uf6hfeld J
- H\uf8yer-Hansen M
- Halayko Aj
- Hale An
- Halonen Sk
- Hamasaki M
- Han F
- Han T
- Hancock Mk
- Hansen M
- Harada H
- Harada M
- Hardt Se
- Harper Jw
- Harris Al
- Harris J
- Harris Sd
- Hashimoto M
- Haspel Ja
- Hayashi S
- Hazelhurst La
- He C
- He Yw
- Heidenreich Ka
- Helfrich Mh
- Helgason Gv
- Henske Ep
- Herman B
- Herman Pk
- Hetz C
- Hilfiker S
- Hill Ja
- Hocking Lj
- Hofman P
- Hofmann Tg
- Holyoake Tl
- Hong Mh
- Hood Da
- Hotamisligil Gs
- Houwerzijl Ej
- Hu B
- Hu Ca
- Hu Hm
- Hua Y
- Huang C
- Huang J
- Huang S
- Huang Wp
- Huber Tb
- Huh Wk
- Hung Th
- Hupp Tr
- Hur Gm
- Hurley Jb
- Hussain Sn
- Hussey Pj
- Hwang Jj
- Hwang S
- Ichihara A
- Ilkhanizadeh S
- Inoki K
- Into T
- Iovane V
- Iovanna Jl
- Ip Ny
- Isaka Y
- Ishida H
- Isidoro C
- Isobe K
- Iwasaki A
- Izquierdo M
- Izumi Y
- J\ue4\ue4ttel\ue4 M
- Jaakkola Pm
- Jackson Gr
- Jackson Wt
- Janji B
- Jendrach M
- Jeon Jh
- Jeung Eb
- Jiang H
- Jiang H
- Jiang Jx
- Jiang M
- Jiang Q
- Jiang X
- Jiang X
- Jim\ue9nez A
- Jin M
- Jin S
- Joe Co
- Johansen T
- Johnson De
- Johnson Gv
- Jones Nl
- Joseph B
- Joseph Sk
- Joubert Am
- Juh\ue1sz G
- Juillerat-Jeanneret L
- Jung Ch
- Jung Yk
- Kaarniranta K
- Kaasik A
- Kabuta T
- Kadowaki M
- Kagedal K
- Kamada Y
- Kaminskyy Vo
- Kampinga Hh
- Kanamori H
- Kang C
- Kang Kb
- Kang Ki
- Kang R
- Kang Ya
- Kanki T
- Kanneganti Td
- Kanno H
- Kanthasamy A
- Kanthasamy Ag
- Karantza V
- Kaushal Gp
- Kaushik S
- Kawazoe Y
- Ke Py
- Kehrl Jh
- Kelekar A
- Kerkhoff C
- Kessel Dh
- Khalil H
- Kiel Ja
- Kiger Aa
- Kihara A
- Kim Dh
- Kim Dh
- Kim Dr
- Kim Ek
- Kim Hr
- Kim Jc
- Kim Jh
- Kim Jk
- Kim Js
- Kim Pk
- Kim Sw
- Kim Y
- Kim Ys
- Kimchi A
- Kimmelman Ac
- King Js
- Kinsella Tj
- Kirkin V
- Kirshenbaum La
- Kitamoto K
- Kitazato K
- Klein L
- Klimecki Wt
- Klionsky Dj
- Klucken J
- Knecht E
- Ko Bc
- Koch Jc
- Koga H
- Koh Jy
- Koh Yh
- Koike M
- Komatsu M
- Kominami E
- Kong Hj
- Kong Wj
- Korolchuk Vi
- Kotake Y
- Koukourakis Mi
- Kouri Flores JB
- Kov\ue1cs Al
- Kr\ue4mer H
- Kr\ufcger R
- Kraft C
- Krainc D
- Kretz-Remy C
- Krichevsky Am
- Kroemer G
- Krut O
- Ktistakis Nt
- Kuan Cy
- Kucharczyk R
- Kumar A
- Kumar R
- Kumar S
- Kundu M
- Kung Hj
- Kurz T
- Kwon Hj
- L\u151w P
- L\ue1szl\uf3 L
- L\uf3pez-Ot\uedn C
- La Spada AR
- Lafont F
- Lamark T
- Landry J
- Lane Jd
- Lapaquette P
- Laporte Jf
- Lavandero S
- Lavoie Jn
- Layfield R
- Lazo Pa
- Le Cam L
- Le W
- Ledbetter Dj
- Lee Aj
- Lee Bw
- Lee Gm
- Lee J
- Lee Jh
- Lee M
- Lee Ms
- Lee Sh
- Leeuwenburgh C
- Legembre P
- Legouis R
- Lehmann M
- Lei Hy
- Lei Qy
- Leib Da
- Leiro J
- Lemasters Jj
- Lemoine A
- Lesniak Ms
- Lev D
- Levenson Vv
- Levine B
- Levy E
- Li F
- Li Jl
- Li L
- Li S
- Li W
- Li Xj
- Li Yb
- Li Yp
- Liang C
- Liang Q
- Liao Yf
- Liberski Pp
- Lieberman A
- Lim Hj
- Lim K
- Lim Kl
- Lin Cf
- Lin Fc
- Lin J
- Lin Jd
- Lin K
- Lin Wc
- Lin Ww
- Lin Yl
- Linden R
- Lingor P
- Lippincott-Schwartz J
- Lisanti Mp
- Liton Pb
- Liu B
- Liu Cf
- Liu K
- Liu L
- Liu Qa
- Liu W
- Liu Y
- Liu Yc
- Lockshin Ra
- Lok Cn
- Lonial S
- Loos B
- Lopez-Berestein G
- Lossi L
- Lotze Mt
- Lu B
- Lu B
- Lu B
- Lu Z
- Luciano F
- Lukacs Nw
- Lund Ah
- Lynch-Day Ma
- M\ufcller S
- M\ufcnger K
- M\ufcnz C
- Ma Y
- Macian F
- MacKeigan Jp
- Macleod Kf
- Madeo F
- Maiuri L
- Maiuri Mc
- Malagoli D
- Malicdan Mc
- Malorni W
- Man N
- Mandelkow Em
- Manon S
- Manov I
- Mao K
- Mao X
- Mao Z
- Marambaud P
- Marazziti D
- Marcel Yl
- Marchbank K
- Marchetti P
- Marciniak Sj
- Marcondes M
- Mardi M
- Marfe G
- Mari\uf1o G
- Markaki M
- Marten Mr
- Martin Sj
- Martinand-Mari C
- Martinet W
- Martinez-Vicente M
- Masini M
- Matarrese P
- Matsuo S
- Matteoni R
- Mayer A
- Mazure Nm
- McConkey Dj
- McConnell Mj
- McDermott C
- McDonald C
- McInerney Gm
- McKenna Sl
- McLaughlin B
- McLean Pj
- McMaster Cr
- McQuibban Ga
- Meijer Aj
- Meisler Mh
- Mel\ue9ndez A
- Melia Tj
- Melino G
- Mena Ma
- Menendez Ja
- Menna-Barreto Rf
- Menon Mb
- Menzies Fm
- Mercer Ca
- Merighi A
- Merry De
- Meschini S
- Meyer Cg
- Meyer Tf
- Miao Cy
- Miao Jy
- Michels Pa
- Michiels C
- Mijaljica D
- Milojkovic A
- Minucci S
- Miracco C
- Miranti Ck
- Mitroulis I
- Miyazawa K
- Mizushima N
- Mograbi B
- Mohseni S
- Molero X
- Mollereau B
- Mollinedo F
- Momoi T
- Monastyrska I
- Monick Mm
- Monteiro Mj
- Moore Mn
- Mora R
- Moreau K
- Moreira Pi
- Moriyasu Y
- Moscat J
- Mostowy S
- Mottram Jc
- Motyl T
- Moussa Ce
- Muller S
- Murphy Lo
- Murphy Me
- Musar\uf2 A
- Mysorekar I
- N\ufcrnberger T
- Nagata E
- Nagata K
- Nahimana A
- Nair U
- Nakagawa T
- Nakahira K
- Nakano H
- Nakatogawa H
- Nanjundan M
- Naqvi Ni
- Narendra Dp
- Narita M
- Navarro M
- Nawrocki St
- Nazarko Ty
- Nemchenko A
- Netea Mg
- Neufeld Tp
- Ney Pa
- Nezis Ip
- Nguyen Hp
- Nie D
- Nishino I
- Nislow C
- Nixon Ra
- Noda T
- Noegel Aa
- Nogalska A
- Noguchi S
- Notterpek L
- Novak I
- Nozaki T
- Nukina N
- Nyfeler B
- Obara K
- Oberley Td
- Oddo S
- Ogawa M
- Ohashi T
- Okamoto K
- Oleinick Nl
- Oliver Fj
- Olsen Lj
- Olsson S
- Opota O
- Osborne Tf
- Ostrander Gk
- Otsu K
- Ou Jh
- Ouimet M
- Overholtzer M
- Ozpolat B
- P\uf6ggeler S
- Paganetti P
- Pagnini U
- Pallet N
- Palmer Ge
- Palumbo C
- Pan T
- Panaretakis T
- Pandey Ub
- Papackova Z
- Papassideri I
- Paris I
- Park J
- Park Ok
- Parys Jb
- Parzych Kr
- Patschan S
- Patterson C
- Pattingre S
- Pawelek Jm
- Peng J
- Perlmutter Dh
- Perrotta I
- Perry G
- Pervaiz S
- Peter M
- Peters Gj
- Petersen M
- Petrovski G
- Phang Jm
- Piacentini M
- Pierre P
- Pierrefite-Carle V
- Pierron G
- Pinkas-Kramarski R
- Piras A
- Piri N
- Platanias Lc
- Po\ufcs C
- Poirot M
- Poletti A
- Pozuelo-Rubio M
- Pr\ue6torius-Ibba M
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- Publication venue
- Publication date
- 01/01/2012
- Field of study
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field
Guidelines for the use and interpretation of assays for monitoring autophagy.
- Author
- Abdalla Fc
- Abeliovich H
- Abraham Rt
- Acevedo Arozena A
- Adeli K
- Agholme L
- Agnello M
- Agostinis P
- Aguirre Ghiso Ja
- Ahn Hj
- Ait Mohamed O
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- Akematsu T
- Akira S
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- Al Zeer Ma
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- Alegre Abarrategui J
- Aleo Mf
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- Almonte Becerril M
- Amano A
- Amaravadi R
- Amarnath S
- Amer Ao
- Anantharam V
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- Ann Dk
- Anoopkumar Dukie S
- Aoki H
- Apostolova N
- Arancia G
- Aris Jp
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- Asare Ny
- Ashida H
- Askanas V
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- Auberger P
- B\ue1nhegyi G
- B\ue9chet Dm
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- Backues Sk
- Baehrecke Eh
- Bahr Ba
- Bai Xy
- Bailly Y
- Baiocchi R
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- Bassham Dc
- Bast RC Jr
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- Beau I
- Begley Tj
- Behl C
- Behrends C
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- Bellaire B
- Bendall Lj
- Benetti L
- Berliocchi L
- Bernardi H
- Bernassola F
- Besteiro S
- Bhatia Kissova I
- Bi X
- Biard Piechaczyk M
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- Gonz\ue1lez Polo Ra
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- Gonzalez Cd
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- Meyer Tf
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- Michiels C
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- Minucci S
- Miracco C
- Miranti Ck
- Mitroulis I
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- Mizushima N
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- Molero X
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- Mollinedo F
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- Monick Mm
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- Mora R
- Moreau K
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- Murphy Me
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- N\ufcrnberger T
- Nagata E
- Nagata K
- Nahimana A
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- Nakahira K
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- Nakatogawa H
- Nanjundan M
- Naqvi Ni
- Narendra Dp
- Narita M
- Navarro M
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- Netea Mg
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- Noda T
- Noegel Aa
- Nogalska A
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- Poletti A
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- Pr\ue6torius Ibba M
- Prasad A
- Prescott M
- Priault M
- Produit Zengaffinen N
- Progulske Fox A
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- Przedborski S
- Przyklenk K
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- Puyal J
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- Qin L
- Qin Zh
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- R\ue9gnier Vigouroux A
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- Sadoshima J
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- Saitoh T
- Sakagami H
- Sakai Y
- Salekdeh Gh
- Salomoni P
- Salvaterra Pm
- Salvesen G
- Salvioli R
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- Sandri Marco
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- Sansanwal P
- Santambrogio L
- Saran S
- Sarkar S
- Sarwal M
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- Sasnauskiene A
- Sass M
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- Sato M
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- Schapira Ah
- Scharl M
- Scheper W
- Schiaffino S
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- Schneider C
- Schneider Me
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- Schorderet Df
- Schwartz Gk
- Scorrano Luca
- Sealy L
- Seglen Po
- Segura Aguilar J
- Seiliez I
- Seleverstov O
- Sell C
- Seo Jb
- Separovic D
- Setaluri V
- Setoguchi T
- Settembre C
- Shacka Jj
- Shanmugam M
- Shapiro Im
- Shaulian E
- Shaw Rj
- Shelhamer Jh
- Shen Hm
- Shen Wc
- Sheng Zh
- Shi Y
- Shibuya K
- Shidoji Y
- Shieh Jj
- Shih Cm
- Shimada Y
- Shimizu S
- Shintani T
- Shirihai Os
- Shore Gc
- Sibirny Aa
- Sidhu Sb
- Sikorska B
- Silva Zacarin E
- Silva Zacarin Ec
- Simmons A
- Simon Ak
- Simon Hu
- Simone C
- Simonsen A
- Sinclair Da
- Singh R
- Sinha D
- Sinicrope Fa
- Sirko A
- Siu Pm
- Sivridis E
- Skop V
- Skulachev Vp
- Slack Rs
- Smaili Ss
- Smith Dr
- Soengas Ms
- Soldati T
- Song X
- Sood Ak
- Soong Tw
- Sotgia F
- Spector Sa
- Spies Cd
- Springer W
- Srinivasula Sm
- Stefanis L
- Steffan Js
- Stendel R
- Stenmark H
- Stephanou A
- Stern St
- Sternberg C
- Stork B
- Str\ue5lfors P
- Subauste Cs
- Sui X
- Sulzer D
- Sun J
- Sun Sy
- Sun Zj
- Sung Jj
- Suzuki K
- Suzuki T
- Swanson Ms
- Swanton C
- Sweeney St
- Sy Lk
- Szabadkai Gyorgy
- T\uf6nges L
- Tabas I
- Taegtmeyer H
- Tafani M
- Tak\ue1cs Vellai K
- Takano Y
- Takegawa K
- Takemura G
- Takeshita F
- Talbot Nj
- Tan Ks
- Tanaka K
- Tanaka K
- Tang D
- Tang D
- Tanida I
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- Tavernarakis N
- Taylor Ga
- Taylor Gs
- Taylor Jp
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- Terman A
- Tettamanti G
- Thevissen K
- Thompson Cb
- Thorburn A
- Thumm M
- Tian F
- Tian Y
- Tocchini Valentini G
- Tolkovsky Am
- Tomino Y
- Tooze Sa
- Tournier C
- Tower J
- Towns R
- Trajkovic V
- Travassos Lh
- Tsai Tf
- Tschan Mp
- Tsubata T
- Tsung A
- Turk B
- Turner Ls
- Tyagi Sc
- Uchiyama Y
- Ueno T
- Umekawa M
- Umemiya Shirafuji R
- Unni Vk
- Vaccaro Mi
- Valente Em
- Van den Berghe G
- van der Klei Ij
- van Doorn W
- van Dyk Lf
- van Egmond M
- van Grunsven La
- Vandenabeele P
- Vandenberghe Wp
- Vanhorebeek I
- Vaquero Ec
- Velasco G
- Vellai T
- Vicencio Jm
- Vierstra Rd
- Vila M
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- Viola G
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- Wan Xb
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- Wang J
- Wang K
- Wang M
- Wang Rc
- Wang X
- Wang X
- Wang Y
- Wang Yj
- Wang Z
- Wang Z
- Wang Zc
- Wansink Dg
- Ward Dm
- Watada H
- Waters Sl
- Webster P
- Wei L
- Weihl Cc
- Weiss Wa
- Welford Sm
- Wen Lp
- Whitehouse Ca
- Whitton Jl
- Whitworth Aj
- Wileman T
- Wiley Jw
- Wilkinson S
- Willbold D
- Williams Rl
- Williamson Pr
- Wouters Bg
- Wu C
- Wu Dc
- Wu Wk
- Wyttenbach A
- Xavier Rj
- Xi Z
- Xia P
- Xiao G
- Xie Z
- Xie Z
- Xu Dz
- Xu J
- Xu L
- Xu X
- Yamamoto A
- Yamamoto A
- Yamashina S
- Yamashita M
- Yan X
- Yanagida M
- Yang Ds
- Yang E
- Yang Jm
- Yang Sy
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- Yang Wy
- Yang Z
- Yao Mc
- Yao Tp
- Yeganeh B
- Yen Wl
- Yin Jj
- Yin Xm
- Yoo Oj
- Yoon G
- Yoon Sy
- Yorimitsu T
- Yoshikawa Y
- Yoshimori T
- Yoshimoto K
- You Hj
- Youle Rj
- Younes A
- Yu L
- Yu L
- Yu Sw
- Yu Wh
- Yuan Zm
- Yue Z
- Yun Ch
- Yuzaki M
- Zabirnyk O
- Zacks D
- Zacksenhaus E
- Zaffaroni N
- Zakeri Z
- Zeh HJ 3rd
- Zeitlin So
- Zhang H
- Zhang Hl
- Zhang J
- Zhang Jp
- Zhang L
- Zhang L
- Zhang My
- Zhang Xd
- Zhao M
- Zhao Y
- Zhao Yf
- Zhao Zj
- Zheng X
- Zhivotovsky B
- Zhong Q
- Zhou Cz
- Zhu C
- Zhu Wg
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- Zhu Y
- Zoladek T
- Zong Wx
- Zorzano A
- Zschocke J
- Zuckerbraun B.
- Publication venue
- Publication date
- 01/01/2012
- Field of study
Guidelines for the use and interpretation of assays for monitoring autophagy
- Author
- Abdalla FC
- Abeliovich H
- Abraham RT
- Acevedo-Arozena A
- Adeli K
- Agholme L
- Agnello M
- Agostinis P
- Aguirre-Ghiso JA
- Ahn HJ
- Ait-Mohamed O
- Ait-Si-Ali S
- Akematsu T
- Akira S
- Al-Younes HM
- Al-Zeer MA
- Albert ML
- Albin RL
- Alegre-Abarrategui J
- Aleo MF
- Alirezaei M
- Almasan A
- Almonte-Becerril M
- Amano A
- Amaravadi R
- Amarnath S
- Amer AO
- Anantharam V
- Andrieu-Abadie N
- Ann DK
- Anoopkumar-Dukie S
- Aoki H
- Apostolova N
- Arancia G
- Aris JP
- Asanuma K
- Asare NY
- Ashida H
- Askanas V
- Askew DS
- Auberger P
- Baba M
- Backues SK
- Baehrecke EH
- Bahr BA
- Bai XY
- Bailly Y
- Baiocchi R
- Baldini G
- Balduini W
- Ballabio A
- Bamber BA
- Bampton ET
- Bartholomew CR
- Bassham DC
- Bast RC Jr
- Batoko H
- Bay BH
- Beau I
- Begley TJ
- Behl C
- Behrends C
- Bekri S
- Bellaire B
- Bendall LJ
- Benetti L
- Berliocchi L
- Bernardi H
- Bernassola F
- Besteiro S
- Bhatia-Kissova I
- Bi X
- Biard-Piechaczyk M
- Blum JS
- Boise LH
- Bonaldo P
- Boone DL
- Bornhauser BC
- Bortoluci KR
- Bossis I
- Bost F
- Bourquin JP
- Boya P
- Boyer-Guittaut M
- Bozhkov PV
- Brady NR
- Brancolini C
- Brech A
- Brenman JE
- Brennand A
- Bresnick EH
- Brest P
- Bridges D
- Bristol ML
- Brookes PS
- Brown EJ
- Brumell JH
- Brunetti-Pierri N
- Brunk UT
- Bulman DE
- Bultman SJ
- Bultynck G
- Burbulla LF
- Bursch W
- Butchar JP
- Buzgariu W
- Bydlowski SP
- Bánhegyi G
- Béchet DM
- Cadwell K
- Cahová M
- Cai D
- Cai J
- Cai Q
- Calabretta B
- Calvo-Garrido J
- Camougrand N
- Campanella M
- Campos-Salinas J
- Candi E
- Cao L
- Caplan AB
- Carding SR
- Cardoso SM
- Carew JS
- Carlin CR
- Carmignac V
- Carneiro LA
- Carra S
- Caruso RA
- Casari G
- Casas C
- Castino R
- Cebollero E
- Cecconi F
- Celli J
- Chaachouay H
- Chae HJ
- Chai CY
- Chan DC
- Chan EY
- Chang RC
- Che CM
- Chen CC
- Chen GC
- Chen GQ
- Chen M
- Chen Q
- Chen SS
- Chen W
- Chen X
- Chen X
- Chen X
- Chen Y
- Chen Y
- Chen YG
- Chen YJ
- Chen Z
- Cheng A
- Cheng CH
- Cheng Y
- Cheong H
- Cheong JH
- Cherry S
- Chess-Williams R
- Cheung ZH
- Chevet E
- Chiang HL
- Chiarelli R
- Chiba T
- Chin LS
- Chiou SH
- Chisari FV
- Cho CH
- Cho DH
- Choi AM
- Choi D
- Choi KS
- Choi ME
- Chouaib S
- Choubey D
- Choubey V
- Chu CT
- Chuang TH
- Chueh SH
- Chun T
- Chwae YJ
- Chye ML
- Ciarcia R
- Ciriolo MR
- Clague MJ
- Clark RS
- Clarke PG
- Clarke R
- Codogno P
- Coller HA
- Colombo MI
- Comincini S
- Condello M
- Condorelli F
- Cookson MR
- Coombs GH
- Coppens I
- Corbalan R
- Cossart P
- Costelli P
- Costes S
- Coto-Montes A
- Couve E
- Coxon FP
- Cregg JM
- Crespo JL
- Cronjé MJ
- Cuervo AM
- Cullen JJ
- Czaja MJ
- D'Amelio M
- Darfeuille-Michaud A
- Davids LM
- Davies FE
- De Felici M
- de Groot JF
- de Haan CA
- De Martino L
- De Milito A
- De Tata V
- Debnath J
- Degterev A
- Dehay B
- Delbridge LM
- Demarchi F
- Deng YZ
- Dengjel J
- Dent P
- Denton D
- Deretic V
- Desai SD
- Devenish RJ
- Di Gioacchino M
- Di Paolo G
- Di Pietro C
- Diaz-Meco MT
- Diaz-Nido J
- Dikic I
- Dinesh-Kumar SP
- Ding WX
- Distelhorst CW
- Diwan A
- Djavaheri-Mergny M
- Dokudovskaya S
- Dong Z
- Dorsey FC
- Dosenko V
- Dowling JJ
- Doxsey S
- Dreux M
- Drew ME
- Duan Q
- Duchosal MA
- Duff K
- Dugail I
- Durbeej M
- Duszenko M
- Díaz-Araya G
- Díaz-Laviada I
- Edelstein CL
- Edinger AL
- Egea G
- Eichinger L
- Eissa NT
- Ekmekcioglu S
- El-Deiry WS
- Elazar Z
- Elgendy M
- Ellerby LM
- Eng KE
- Engelbrecht AM
- Engelender S
- Erenpreisa J
- Escalante R
- Esclatine A
- Eskelinen EL
- Espert L
- Espina V
- Fan H
- Fan J
- Fan QW
- Fan Z
- Fang S
- Fang Y
- Fanto M
- Fanzani A
- Farkas T
- Farré JC
- Faure M
- Fechheimer M
- Feng CG
- Feng J
- Feng Q
- Feng Y
- Feuer R
- Figueiredo-Pereira ME
- Fimia GM
- Fingar DC
- Finkbeiner S
- Finkel T
- Finley KD
- Fiorito F
- Fisher EA
- Fisher PB
- Flajolet M
- Florez-McClure ML
- Florio S
- Fon EA
- Fornai F
- Fortunato F
- Fotedar R
- Fowler DH
- Fox HS
- Franco R
- Frankel LB
- Fransen M
- Fuentes JM
- Fueyo J
- Fujii J
- Fujisaki K
- Fujita E
- Fukuda M
- Furukawa RH
- Fésüs L
- Gaestel M
- Gailly P
- Gajewska M
- Galliot B
- Galy V
- Ganesh S
- Ganetzky B
- Ganley IG
- Gao FB
- Gao GF
- Gao J
- Garcia L
- Garcia-Manero G
- Garcia-Marcos M
- Garmyn M
- Gartel AL
- Gatti E
- Gautel M
- Gawriluk TR
- Gegg ME
- Geng J
- Germain M
- Gestwicki JE
- Gewirtz DA
- Ghavami S
- Ghosh P
- Giammarioli AM
- Giatromanolaki AN
- Gibson SB
- Gilkerson RW
- Ginger ML
- Ginsberg HN
- Golab J
- Goligorsky MS
- Golstein P
- Gomez-Manzano C
- Goncu E
- Gongora C
- Gonzalez CD
- Gonzalez R
- Gonzalez-Rey E
- González-Estévez C
- González-Polo RA
- Gorbunov NV
- Gorski S
- Goruppi S
- Gottlieb RA
- Gozuacik D
- Granato GE
- Grant GD
- Green KN
- Gregorc A
- Gros F
- Grose C
- Grunt TW
- Gual P
- Guan JL
- Guan KL
- Guichard SM
- Gukovskaya AS
- Gukovsky I
- Gunst J
- Gustafsson AB
- Halayko AJ
- Hale AN
- Halonen SK
- Hamasaki M
- Han F
- Han T
- Hancock MK
- Hansen M
- Harada H
- Harada M
- Hardt SE
- Harper JW
- Harris AL
- Harris J
- Harris SD
- Hashimoto M
- Haspel JA
- Hayashi S
- Hazelhurst LA
- He C
- He YW
- Heidenreich KA
- Helfrich MH
- Helgason GV
- Henske EP
- Herman B
- Herman PK
- Hetz C
- Hilfiker S
- Hill JA
- Hocking LJ
- Hofman P
- Hofmann TG
- Holyoake TL
- Hong MH
- Hood DA
- Hotamisligil GS
- Houwerzijl EJ
- Hu B
- Hu CA
- Hu HM
- Hua Y
- Huang C
- Huang J
- Huang S
- Huang WP
- Huber TB
- Huh WK
- Hung TH
- Hupp TR
- Hur GM
- Hurley JB
- Hussain SN
- Hussey PJ
- Hwang JJ
- Hwang S
- Hébert MJ
- Höhfeld J
- Høyer-Hansen M
- Ichihara A
- Ilkhanizadeh S
- Inoki K
- Into T
- Iovane V
- Iovanna JL
- Ip NY
- Isaka Y
- Ishida H
- Isidoro C
- Isobe K
- Iwasaki A
- Izquierdo M
- Izumi Y
- Jaakkola PM
- Jackson GR
- Jackson WT
- Janji B
- Jendrach M
- Jeon JH
- Jeung EB
- Jiang H
- Jiang H
- Jiang JX
- Jiang M
- Jiang Q
- Jiang X
- Jiang X
- Jiménez A
- Jin M
- Jin S
- Joe CO
- Johansen T
- Johnson DE
- Johnson GV
- Jones NL
- Joseph B
- Joseph SK
- Joubert AM
- Juhász G
- Juillerat-Jeanneret L
- Jung CH
- Jung YK
- Jäättelä M
- Kaarniranta K
- Kaasik A
- Kabuta T
- Kadowaki M
- Kagedal K
- Kamada Y
- Kaminskyy VO
- Kampinga HH
- Kanamori H
- Kang C
- Kang KB
- Kang KI
- Kang R
- Kang YA
- Kanki T
- Kanneganti TD
- Kanno H
- Kanthasamy A
- Kanthasamy AG
- Karantza V
- Kaushal GP
- Kaushik S
- Kawazoe Y
- Ke PY
- Kehrl JH
- Kelekar A
- Kerkhoff C
- Kessel DH
- Khalil H
- Kiel JA
- Kiger AA
- Kihara A
- Kim DH
- Kim DH
- Kim DR
- Kim EK
- Kim HR
- Kim JC
- Kim JH
- Kim JK
- Kim JS
- Kim PK
- Kim SW
- Kim Y
- Kim YS
- Kimchi A
- Kimmelman AC
- King JS
- Kinsella TJ
- Kirkin V
- Kirshenbaum LA
- Kitamoto K
- Kitazato K
- Klein L
- Klimecki WT
- Klionsky DJ
- Klucken J
- Knecht E
- Ko BC
- Koch JC
- Koga H
- Koh JY
- Koh YH
- Koike M
- Komatsu M
- Kominami E
- Kong HJ
- Kong WJ
- Korolchuk VI
- Kotake Y
- Koukourakis MI
- Kouri Flores JB
- Kovács AL
- Kraft C
- Krainc D
- Kretz-Remy C
- Krichevsky AM
- Kroemer G
- Krut O
- Krämer H
- Krüger R
- Ktistakis NT
- Kuan CY
- Kucharczyk R
- Kumar A
- Kumar R
- Kumar S
- Kundu M
- Kung HJ
- Kurz T
- Kwon HJ
- La Spada AR
- Lafont F
- Lamark T
- Landry J
- Lane JD
- Lapaquette P
- Laporte JF
- Lavandero S
- Lavoie JN
- Layfield R
- Lazo PA
- Le Cam L
- Le W
- Ledbetter DJ
- Lee AJ
- Lee BW
- Lee GM
- Lee J
- Lee JH
- Lee M
- Lee MS
- Lee SH
- Leeuwenburgh C
- Legembre P
- Legouis R
- Lehmann M
- Lei HY
- Lei QY
- Leib DA
- Leiro J
- Lemasters JJ
- Lemoine A
- Lesniak MS
- Lev D
- Levenson VV
- Levine B
- Levy E
- Li F
- Li JL
- Li L
- Li S
- Li W
- Li XJ
- Li YB
- Li YP
- Liang C
- Liang Q
- Liao YF
- Liberski PP
- Lieberman A
- Lim HJ
- Lim K
- Lim KL
- Lin CF
- Lin FC
- Lin J
- Lin JD
- Lin K
- Lin WC
- Lin WW
- Lin YL
- Linden R
- Lingor P
- Lippincott-Schwartz J
- Lisanti MP
- Liton PB
- Liu B
- Liu CF
- Liu K
- Liu L
- Liu QA
- Liu W
- Liu Y
- Liu YC
- Lockshin RA
- Lok CN
- Lonial S
- Loos B
- Lopez-Berestein G
- Lossi L
- Lotze MT
- Lu B
- Lu B
- Lu B
- Lu Z
- Luciano F
- Lukacs NW
- Lund AH
- Lynch-Day MA
- László L
- López-Otín C
- Lőw P
- Ma Y
- Macian F
- MacKeigan JP
- Macleod KF
- Madeo F
- Maiuri L
- Maiuri MC
- Malagoli D
- Malicdan MC
- Malorni W
- Man N
- Mandelkow EM
- Manon S
- Manov I
- Mao K
- Mao X
- Mao Z
- Marambaud P
- Marazziti D
- Marcel YL
- Marchbank K
- Marchetti P
- Marciniak SJ
- Marcondes M
- Mardi M
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- Publication venue
- Publication date
- Field of study
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued
to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been
expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have
described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable
methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a
difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or
autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete
process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result
in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within,
lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is
especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily
equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a
concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity.
Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine
macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are
focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part
on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most
appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we
consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by
discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field
Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).
- Author
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- S. L. Gaff in and S. Watanabe J
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- Y. Miyake T. Abe, and T. Yamano, in International Symposium on Oxidases and Related Redox Systems
- YA Sharonov
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- YE Erokhin
- YJ Kang
- YK Turakulov
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- Z Bradic
- Z Gasyna
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- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 01/01/1984
- Field of study