A new algorithm for the permanent approach to valence bond theory

Based on Ryser permanent expansion method, a new algorithm for the so-called permanent approach to valence bond theory is presented. With the new algorithm, Hamiltonian and overlap matrice elements are calculated directly, rather than by the ''sequential'' Laplace expansion method used in our previous work. The algorithm will be more easily implemented than that based on Laplace expansion method

Valence bond study of dissociation behavior and spectroscopic constants for the ground states of LiF and NaF

Ab initio VB calculations were used to determine the accurate spectroscopic parameters of the ground stated of LiF and NaF. A set of potential energy curves corresponding to the ground states including ionic and covalent interactions, pure ionic interaction and covalent interaction were generated using the VBSCF method. Curve crossing in the dissociation processes of LiF and NaF was discussed. The optimized VB wave functions suggest that LIF and NaF are of high ionicity, and their ionic weights are 86.2% and 94.6%, respectively. NaF has a higher ionicity. The main difference between atom F and ion F- and the effect of the proper description of this difference on dissociation energies were investigated

Configuration interaction in valence bond theory

Configuration interaction tenichque is applied to the valence bond theory. Virtual VB orbitals are built, which are localized and orthogonal to their corresponding occupied orbitals and the excited VB structures are defined, which come from their corresponding fundamental VB structures. The testing calculations of H-2, LiH, HF show that the VB results using CI method match those of the molecular orbital based on the coupled cluster CCSD method, and the Cl technique may become a useful tool in VB method

Quinoline Group Modified Carbon Nanotubes for the Detection of Zinc Ions

Carbon nanotubes (CNTs) were covalently modified by fluorescence ligand (glycine-N-8-quinolylamide) and formed a hybrid material which could be used as a selective probe for metal ions detection. The anchoring to the surface of the CNTs was carried out by the reaction between the precursor and the carboxyl groups available on the surface of the support. Fourier transform infrared spectroscopy (FTIR) and Thermogravimetric analysis (TGA) unambiguously proved the existence of covalent bonds between CNTs and functional ligands. Fluorescence characterization shows that the obtained organic–inorganic hybrid composite is highly selective and sensitive (0.2 μM) to Zn(II) detection

Pan-cancer analysis of whole genomes

Cancer is driven by genetic change, and the advent of massively parallel sequencing has enabled systematic documentation of this variation at the whole-genome scale(1-3). Here we report the integrative analysis of 2,658 whole-cancer genomes and their matching normal tissues across 38 tumour types from the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA). We describe the generation of the PCAWG resource, facilitated by international data sharing using compute clouds. On average, cancer genomes contained 4-5 driver mutations when combining coding and non-coding genomic elements; however, in around 5% of cases no drivers were identified, suggesting that cancer driver discovery is not yet complete. Chromothripsis, in which many clustered structural variants arise in a single catastrophic event, is frequently an early event in tumour evolution; in acral melanoma, for example, these events precede most somatic point mutations and affect several cancer-associated genes simultaneously. Cancers with abnormal telomere maintenance often originate from tissues with low replicative activity and show several mechanisms of preventing telomere attrition to critical levels. Common and rare germline variants affect patterns of somatic mutation, including point mutations, structural variants and somatic retrotransposition. A collection of papers from the PCAWG Consortium describes non-coding mutations that drive cancer beyond those in the TERT promoter(4); identifies new signatures of mutational processes that cause base substitutions, small insertions and deletions and structural variation(5,6); analyses timings and patterns of tumour evolution(7); describes the diverse transcriptional consequences of somatic mutation on splicing, expression levels, fusion genes and promoter activity(8,9); and evaluates a range of more-specialized features of cancer genomes(8,10-18).Peer reviewe

Global, regional, and national incidence of six major immune-mediated inflammatory diseases: findings from the global burden of disease study 2019

Background The causes for immune-mediated inflammatory diseases (IMIDs) are diverse and the incidence trends of IMIDs from specific causes are rarely studied. The study aims to investigate the pattern and trend of IMIDs from 1990 to 2019. Methods We collected detailed information on six major causes of IMIDs, including asthma, inflammatory bowel disease, multiple sclerosis, rheumatoid arthritis, psoriasis, and atopic dermatitis, between 1990 and 2019, derived from the Global Burden of Disease study in 2019. The average annual percent change (AAPC) in number of incidents and age standardized incidence rate (ASR) on IMIDs, by sex, age, region, and causes, were calculated to quantify the temporal trends. Findings In 2019, rheumatoid arthritis, atopic dermatitis, asthma, multiple sclerosis, psoriasis, inflammatory bowel disease accounted 1.59%, 36.17%, 54.71%, 0.09%, 6.84%, 0.60% of overall new IMIDs cases, respectively. The ASR of IMIDs showed substantial regional and global variation with the highest in High SDI region, High-income North America, and United States of America. Throughout human lifespan, the age distribution of incident cases from six IMIDs was quite different. Globally, incident cases of IMIDs increased with an AAPC of 0.68 and the ASR decreased with an AAPC of −0.34 from 1990 to 2019. The incident cases increased across six IMIDs, the ASR of rheumatoid arthritis increased (0.21, 95% CI 0.18, 0.25), while the ASR of asthma (AAPC = −0.41), inflammatory bowel disease (AAPC = −0.72), multiple sclerosis (AAPC = −0.26), psoriasis (AAPC = −0.77), and atopic dermatitis (AAPC = −0.15) decreased. The ASR of overall and six individual IMID increased with SDI at regional and global level. Countries with higher ASR in 1990 experienced a more rapid decrease in ASR. Interpretation The incidence patterns of IMIDs varied considerably across the world. Innovative prevention and integrative management strategy are urgently needed to mitigate the increasing ASR of rheumatoid arthritis and upsurging new cases of other five IMIDs, respectively. Funding The Global Burden of Disease Study is funded by the Bill and Melinda Gates Foundation. The project funded by Scientific Research Fund of Sichuan Academy of Medical Sciences & Sichuan Provincial People's Hospital (2022QN38)

Ab initio valence bond study on AB-type molecules. A description for XH (X = Li, Be, B, C, N, O, F) and XF (X = Li, Be, B)

Ab initio valence bond method is employed to quantitatively study the concepts of ionic resonance energy mid ionicity of a chemical bond in the cases of hydrides XH (X = Li, Be, B, C, N, O, F) and fluorides XF (X = Li, Be, B). By establishing the relationship between resonance and stability, and comparing the calculated ionicities with Pauling's earlier estimations in the above diatomic molecules, the merits of Pauling's classical resonance theory were demonstrated at the ab initio level