Optimal perturbation for two-dimensional vortex systems: route to non-axisymmetric state

We investigate perturbations that maximize the gain of disturbance energy in a two-dimensional isolated vortex and a counter-rotating vortex pair. The optimization is carried out using the method of Lagrange multipliers. For low initial energy of the perturbation ( ), the nonlinear optimal perturbation/gain is found to be the same as the linear optimal perturbation/gain. Beyond a certain threshold , the optimal perturbation/gain obtained from linear and nonlinear computations are different. There exists a range of for which the nonlinear optimal gain is higher than the linear optimal gain. For an isolated vortex, the higher value of nonlinear optimal gain is attributed to interaction among different azimuthal components, which is otherwise absent in a linearized system. Spiral dislocations are found in the nonlinear optimal perturbation at the radial location where the most dominant wavenumber changes. Long-time nonlinear evolution of linear and nonlinear optimal perturbations is studied. The evolution shows that, after the initial increment of perturbation energy, the vortex attains a quasi-steady state where the mean perturbation energy decreases on a slow time scale. The quasi-steady vortex state is non-axisymmetric and its shape depends on the initial perturbation. It is observed that the lifetime of a quasi-steady vortex state obtained using the nonlinear optimal perturbation is longer than that obtained using the linear optimal perturbation. For a counter-rotating vortex pair, the mechanism that maximizes the energy gain is found to be similar to that of the isolated vortex. Within the linear framework, the optimal perturbation for a vortex pair can be either symmetric or antisymmetric, whereas the structure of the nonlinear optimal perturbation, beyond the threshold, is always asymmetric. No quasi-steady state for a counter-rotating vortex pair is observed

Pan-cancer analysis of whole genomes

Cancer is driven by genetic change, and the advent of massively parallel sequencing has enabled systematic documentation of this variation at the whole-genome scale(1-3). Here we report the integrative analysis of 2,658 whole-cancer genomes and their matching normal tissues across 38 tumour types from the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA). We describe the generation of the PCAWG resource, facilitated by international data sharing using compute clouds. On average, cancer genomes contained 4-5 driver mutations when combining coding and non-coding genomic elements; however, in around 5% of cases no drivers were identified, suggesting that cancer driver discovery is not yet complete. Chromothripsis, in which many clustered structural variants arise in a single catastrophic event, is frequently an early event in tumour evolution; in acral melanoma, for example, these events precede most somatic point mutations and affect several cancer-associated genes simultaneously. Cancers with abnormal telomere maintenance often originate from tissues with low replicative activity and show several mechanisms of preventing telomere attrition to critical levels. Common and rare germline variants affect patterns of somatic mutation, including point mutations, structural variants and somatic retrotransposition. A collection of papers from the PCAWG Consortium describes non-coding mutations that drive cancer beyond those in the TERT promoter(4); identifies new signatures of mutational processes that cause base substitutions, small insertions and deletions and structural variation(5,6); analyses timings and patterns of tumour evolution(7); describes the diverse transcriptional consequences of somatic mutation on splicing, expression levels, fusion genes and promoter activity(8,9); and evaluates a range of more-specialized features of cancer genomes(8,10-18).Peer reviewe

Salmonella risks due to consumption of aquaculture-produced shrimp

The use of aquaculture is increasing to meet the growing global demand for seafood. However, the use of aquaculture for seafood production incurs potential human health risks, especially from enteric bacteria such as Salmonella spp. Salmonella spp. was the most frequently reported cause of outbreaks associated with crustaceans from 1998 to 2004. Among crustacean species, shrimp are the most economically important, internationally traded seafood commodity, and the most commonly aquaculture-raised seafood imported to the United States. To inform safe aquaculture practices, a quantitative microbial risk assessment (QMRA) was performed, incorporating stochastic variability in pathogen growth, industrial shrimp processing, and consumer shrimp preparation. Several scenarios including gamma irradiation and cooking time were considered in order to examine the relative importance of these practices in terms of their impact on risk. Median annual infection risks for all scenarios considered were below 10−4 and median disability adjusted life year (DALY) metrics were below 10−6 DALY per person per year, however, 95th percentile risks were above 10−4 annual probability of infection and 10−6 DALY per person per year for scenarios with improper cooking and lack of gamma irradiation. The greatest difference between microbiological risks for the scenarios tested was observed when comparing proper vs. improper cooking (5–6 orders of magnitude) and gamma irradiation (4–5 orders of magnitude) compared to (up to less than 1 order of magnitude) for peeling and “deveining” (removing the shrimp digestive tract) vs. peeling only. The findings from this research suggest that restriction of Salmonella spp. to low levels (median 5–30 per L aquaculture pond water) may be necessary for scenarios in which proper downstream food handling and processing cannot be guaranteed.Green Open Access added to TU Delft Institutional Repository ‘You share, we take care!’ – Taverne project https://www.openaccess.nl/en/you-share-we-take-care Otherwise as indicated in the copyright section: the publisher is the copyright holder of this work and the author uses the Dutch legislation to make this work public.Sanitary Engineerin

Development and evaluation of rocket blast and rain erosion resistant composite coatings produced by flame spray techniques /

"February 1959."Includes bibliographical references (pages 33-56).Report prepared by the Research and Development Section, Plastics Group, Technical Staff - Engineering Process Unit, Boeing Airplane Company, Wichita Division, Wichita, Kanas, under U.S.A.F Contract No.Mode of access: Internet

A design manual for determining the thermal characteristics of high speed aircraft /

"Reprint of a report written by Enginering Research Projects Department of Mechanical Engineering, University of California, Berkeley.""10 September 1947."Includes bibliographic references (pages III 7-8)Mode of access: Internet