Pan-cancer analysis of whole genomes

Cancer is driven by genetic change, and the advent of massively parallel sequencing has enabled systematic documentation of this variation at the whole-genome scale(1-3). Here we report the integrative analysis of 2,658 whole-cancer genomes and their matching normal tissues across 38 tumour types from the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA). We describe the generation of the PCAWG resource, facilitated by international data sharing using compute clouds. On average, cancer genomes contained 4-5 driver mutations when combining coding and non-coding genomic elements; however, in around 5% of cases no drivers were identified, suggesting that cancer driver discovery is not yet complete. Chromothripsis, in which many clustered structural variants arise in a single catastrophic event, is frequently an early event in tumour evolution; in acral melanoma, for example, these events precede most somatic point mutations and affect several cancer-associated genes simultaneously. Cancers with abnormal telomere maintenance often originate from tissues with low replicative activity and show several mechanisms of preventing telomere attrition to critical levels. Common and rare germline variants affect patterns of somatic mutation, including point mutations, structural variants and somatic retrotransposition. A collection of papers from the PCAWG Consortium describes non-coding mutations that drive cancer beyond those in the TERT promoter(4); identifies new signatures of mutational processes that cause base substitutions, small insertions and deletions and structural variation(5,6); analyses timings and patterns of tumour evolution(7); describes the diverse transcriptional consequences of somatic mutation on splicing, expression levels, fusion genes and promoter activity(8,9); and evaluates a range of more-specialized features of cancer genomes(8,10-18).Peer reviewe

Water-Based Photocatalytic Sol-Gel TiO2 Coatings: Synthesis and Durability

The environmental impact of industrial technologies and related remediation methods are major research trend lines. Unfortunately, in the development of materials for wastewater treatment or air purification, hazardous reactants are often employed, reducing the overall beneficial contribution of such technology on the environment. We here synthesize stable titanium dioxide (TiO2) sols using a green route, with titanium tetraisopropoxide (TTIP) as precursor, water as solvent and acetic acid acting as catalyst, chelating agent and peptizing agent. The sol was deposited on glass by dip-coating and then analyzed using XRD, SEM and spectrophotometry. Wastewater purification ability was evaluated in the photocatalytic degradation of two organic dyes (Rhodamine B and Methylene Blue). Results on RhB showed > 85% degradation in 6 h maintained along a series of 7 tests, confirming good efficiency and reusability, and 100% in 3 h on MB; efficiency mostly depended on calcination temperature and layer thickness. High photodegradation efficiency was found in nonannealed samples, suggesting TiO2 nanoparticles crystallization during sol-gel production. Yet, such samples showed a gradual decrease in photoactivity in repeated tests, probably due to a partial release of TiO2 particles in solution, while on calcined samples a good adhesion was obtained, leading to a more durable photoactive layer