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Efficient assembly and secretion of recombinant subviral particles of the four dengue serotypes using native prM and E proteins.

Author: Béatrice Nal
Joanne Lo
John M. Nicholls
Kevin Tsz Hin Kwok
Lewis Yu Lam Siu
Maciej Lesniak
Martin Sachse
Mateusz Kudelko
Pei-Gang Wang
Ralf M. Altmeyer
Roberto Bruzzone
Publication venue: 'Public Library of Science (PLoS)'
Publication date: 01/01/2009
Field of study

© 2009 Wang et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.Background: Flavivirus infected cells produce infectious virions and subviral particles, both of which are formed by the assembly of prM and E envelope proteins and are believed to undergo the same maturation process. Dengue recombinant subviral particles have been produced in cell cultures with either modified or chimeric proteins but not using the native forms of prM and E. Methodology/Principal Findings: We have used a codon optimization strategy to obtain an efficient expression of native viral proteins and production of recombinant subviral particles (RSPs) for all four dengue virus (DV) serotypes. A stable HeLa cell line expressing DV1 prME was established (HeLa-prME) and RSPs were analyzed by immunofluorescence and transmission electron microscopy. We found that E protein is mainly present in the endoplasmic reticulum (ER) where assembly of RSPs could be observed. Biochemical characterization of DV1 RSPs secretion revealed both prM protein cleavage and homodimerization of E proteins before their release into the supernatant, indicating that RSPs undergo a similar maturation process as dengue virus. Pulse chase experiment showed that 8 hours are required for the secretion of DV1 RSPs. We have used HeLa-prME to develop a semi-quantitative assay and screened a human siRNA library targeting genes involved in membrane trafficking. Knockdown of 23 genes resulted in a significant reduction in DV RSP secretion, whereas for 22 others we observed an increase of RSP levels in cell supernatant. Conclusions/Significance: Our data describe the efficient production of RSPs containing native prM and E envelope proteins for all dengue serotypes. Dengue RSPs and corresponding producing cell lines are safe and novel tools that can be used in the study of viral egress as well as in the development of vaccine and drugs against dengue virus.This work was supported by the 6th European Framework programme DENFRAME and by the Research Fund for the Control of Infectious Diseases of Hong Kong (RFCID#08070952)

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Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)

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Abe A.
Abedin M. J.
Abeliovich H.
Adachi H.
Adams C. M.
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Agam G.
Agarwal R.
Aghi M. K.
Agnello M.
Agostinis P.
Aguilar P. V.
Aguirre Ghiso J.
Aguirre Ghiso J.
Airoldi E. M.
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Ait Si Ali S.
Akematsu T.
Akporiaye E. T.
Al Rubeai M.
Albaiceta G. M.
Albanese C.
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Publication venue
Publication date: 22/09/2015
Field of study

In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. For example, a key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process versus those that measure fl ux through the autophagy pathway (i.e., the complete process including the amount and rate of cargo sequestered and degraded). In particular, a block in macroautophagy that results in autophagosome accumulation must be differentiated from stimuli that increase autophagic activity, defi ned as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (inmost higher eukaryotes and some protists such as Dictyostelium ) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the fi eld understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. It is worth emphasizing here that lysosomal digestion is a stage of autophagy and evaluating its competence is a crucial part of the evaluation of autophagic flux, or complete autophagy. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. Along these lines, because of the potential for pleiotropic effects due to blocking autophagy through genetic manipulation it is imperative to delete or knock down more than one autophagy-related gene. In addition, some individual Atg proteins, or groups of proteins, are involved in other cellular pathways so not all Atg proteins can be used as a specific marker for an autophagic process. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field

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International Consensus Statement on Rhinology and Allergy: Rhinosinusitis

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Abi Najm S
Abigail P
Abrahams JJ
Abrass LJ
Abreu CB
Abreu NA
Abshirini H
Abuzeid WM
Abuzeid WM
Achar P
Ackerhans M
Adam P
Adappa ND
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Adriaensen G
Agache I
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Ahn CN
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Ahn SH
Ahovuo‐Saloranta A
Aitken M
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Akbari E
Akdis CA
Akira S
Akiyama K
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Al Komser MK
Alam ES
Alandejani T
Alanin MC
Albritton FDT
Albu S
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Aldini G
Alexander NS
Aljebab F
Alkire BC
Allen EK
Alobid I
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Aloulah M
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Al‐Rawi MM
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Al‐Shemari H
Al‐Swiahb JN
Amali A
Amar YG
Amble FR
American Academy of Pediatrics Steering Committee on Quality Improvement and Management (AAP SCQIM)
Amin MR
Amine M
Amodu EJ
Anamika A
Anand V
Anderson DE
Anderson WC
Andhale S
Ankichetty SP
Annamalai S
Anon JB
Anselmo‐Lima WT
Antisdel JL
Antisdel JL
Antunes MB
Antunes MB
Anushiravani M
Anzai Y
Anzić SA
Aramani A
Arden KE
Arild Danielsen K
Aring AM
Arjomandi H
Armenaka M
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Asaka D
Asero R
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Atighechi S
Atlas SJ
Au J
Aukema AA
Aurora R
Autio TJ
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Bednarski KA
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Bengtsson C
Benjamin MR
Benninger MS
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Benninger MS
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Berges‐Gimeno MP
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Bernstein JA
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Beswick DM
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Bettadahalli V
Beule AG
Beyea JA
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Bezerra TF
Bhalla RK
Bhalla V
Bhandarkar ND
Bhandarkar ND
Bhandarkar ND
Bhatt JM
Bhattacharjee S
Bhattacharyya N
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Bhawana G
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Biedlingmaier JF
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Biedlingmaier JF.
Biel MA
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Bikhazi N
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Biswas K
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Bizaki AJ
Blackwell DL
Blackwell KE
Blair C
Bleier BS
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Blount A
Boase S
Boase S
Bockmühl U
Boezaart AP
Bohman A
Bohman A
Bohnhorst I
Boita MM
Bolger WE
Bolger WE
Bolger WE
Bomeli SR
Bondioni MP
Bonfils P
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Bonnomet A
Boonmak P
Borish L
Borsetto D
Bosse Y
Bosso JV
Bothra R
Bousquet J
Bousquet J
Brandsted R
Braun JJ
Braun JJ
Braunstahl GJ
Braverman I
Brescia G
Brescia G
Brietzke SE
Brietzke SE
Brodner D
Brook I
Brook I
Brook I
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Bross‐Soriano D
Brot C
Brown CL
Brown S
Brozek JL
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Brumund KT
Brunner JP
Buckley CE
Buehring I
Bugten V
Bukowy‐Bieryllo Z
Burgstaller JM
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Bush A
Businco LD
Buysschaert ID
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Cahill KN
Cai Y
Calhoun KH
Calixto NE
Callejas CA
Campbell AP
Campbell AP
Campbell RG
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Candoni A
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Cantrell H.
Cao PP
Cao P‐P
Cao Y
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Carroll WW
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Castelnuovo P
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Catalano P
Catalano PJ
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Caughey RJ
Caulley L
Cazzola M
Cekic B
Ceri H
Cervin A
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Chaaban MR
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Chakrabarti A
Chakrabarti A
Chalermwatanachai T
Chalton R
Chambers DW
Chan CL
Chan DK
Chan KO
Chan Y
Chandler JR
Chandra RK
Chandra RK
Chandra RK
Chandra RK
Chandy Z
Chang CC
Chang CC
Chang EH
Chang EH
Chang EH
Chang HS
Chang MT
Chang MT
Chang MT
Chang Y‐S
Chaudhary N
Che C
Chee L
Chen B
Chen B
Chen CF
Chen F
Chen FH
Chen H
Chen J‐B
Chen PH
Chen X
Chen YT
Cheng YK
Cheon YI
Chester AC
Chester AC
Chester AC
Chiarella SE
Chiesa‐Estomba CM
Chin D
Chinratanapisit S
Chiu A
Chiu AG
Chiu AG
Chiu AG
Cho DY
Cho DY
Cho DY
Cho DY
Cho DY
Cho DY
Cho DY
Cho DY
Cho DY
Cho GS
Cho HJ
Cho JH
Cho K
Cho KS
Cho KS
Cho SH
Cho SH
Cho SH
Chobillon MA
Choby G
Choby GW
Choi EB
Choi JH
Chong LY
Chong LY
Chong LY
Chow AW
Chowdhury NI
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Christensen DN
Christensen JM
Chu DK
Chung BJ
Chung SD
Church CA
Cirkovic I
Citardi MJ
Citardi MJ
Claeys S
Claeys S
Clarhed UKE
Clark DW
Clark NM
Clayman GL
Cleland EJ
Cleland EJ
Cleland EJ
Clement PA
Clinger JD
Clunes LA
Coates ML
Codispoti CD
Coey JG
Cohen NA
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Collins FS
Collins FS
Collins MM
Comert S
Conboy P
Conger BT
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Conley DB
Cope EK
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Cormier C
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Crawley BK
Criddle MW
Cronin MJ
Crosby DL
Cross JL
Crotty Alexander LE
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Cui XY
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Cutting GR
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De Boeck I
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DeConde AS
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DeConde AS
DeConde AS
DeConde AS
DeConde AS
DeConde AS
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DeConde AS
DeConde AS
DeConde AS
Dejima K
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Delehaye E
Delemarre T
DelGaudio JM
DelGaudio JM
DelGaudio JM
DelGaudio JM
DelGaudio JM
Dellamonica P
DeMaria S
Demirhan A
Demirhan A
DeMuri GP
DeMuri GP
DeMuri GP
Den Beste KA
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Deng J
Denlinger LC
Derendorf H
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Dilger AE
Dilidaer D
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Dingsor G
Divekar R
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Dixon AE
Dixon BJ
Djupesland PG
Djupesland PG
Djupesland PG
Do TQ
Dobzanski A
Doellman MS
Dogan M
Dolor RJ
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Dubin MG
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Duclos P
Dunbar J
Dunlop G
Durr ML
Dutta M
Dwyhalo KM
Dykewicz MS
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Ebbens FA
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Ebell MH
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Ecevit MC
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Ediriweera ER
Eggesbo HB.
Ehnhage A
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El Mograbi A
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El‐Shmaa NS
Emre IE
Endam LM
Endo Y
Erbek SS
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Ernst FR
Error M
Esmaeilzadeh H
Esposito S
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Essaidi‐Laziosi M
Eviatar E
Eweiss AZ
Expert Panel on Neurologic I
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Falagas ME
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Farrell PM
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Fastenberg JH
Feazel LM
Federspil PA
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Ference EH
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Ferguson BJ
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Ferguson JL
Fernandez IJ
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Gentile VG
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Geramas I
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Gevaert E
Gevaert P
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Gevaert P
Gevaert P
Gevaert P
Gevorgyan A
Ghegan MD
Ghegan MD
Giacchi RJ
Giacchi RJ
Gibbons MD
Giger R
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Gillespie MB
Gion Y
Giotakis AI
Giuseppe M
Glicksman JT
Gliklich RE
Gliklich RE
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Henriquez OA
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Hickner JM
Higashizawa T
Higgins Jr TS
Hilding AC.
Hintschich CA
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Hirsch AG
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Hirsch SD
Hirschberg A
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Hopkins C.
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Huang SW
Huang WH
Huang Z
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Huang Z
Huang Z
Huang ZZ
Huart C
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Hueston WJ
Humphreys IM
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Hunter E
Hunter TD
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Joe SA
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Josephson GD
Joss TV
Jousimies‐Somer HR
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Ponikau JU
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Zhou B
Zia S
Ziegler CGK
Zielinska‐Blizniewska H
Zou L
Zuckerman JD
Zurlo JJ
Zuskin E
Čulig J
Publication venue: 'Wiley'
Publication date: 01/01/2021
Field of study

Background: The 5 years since the publication of the first International Consensus Statement on Allergy and Rhinology: Rhinosinusitis (ICAR‐RS) has witnessed foundational progress in our understanding and treatment of rhinologic disease. These advances are reflected within the more than 40 new topics covered within the ICAR‐RS‐2021 as well as updates to the original 140 topics. This executive summary consolidates the evidence‐based findings of the document. Methods: ICAR‐RS presents over 180 topics in the forms of evidence‐based reviews with recommendations (EBRRs), evidence‐based reviews, and literature reviews. The highest grade structured recommendations of the EBRR sections are summarized in this executive summary. Results: ICAR‐RS‐2021 covers 22 topics regarding the medical management of RS, which are grade A/B and are presented in the executive summary. Additionally, 4 topics regarding the surgical management of RS are grade A/B and are presented in the executive summary. Finally, a comprehensive evidence‐based management algorithm is provided. Conclusion: This ICAR‐RS‐2021 executive summary provides a compilation of the evidence‐based recommendations for medical and surgical treatment of the most common forms of RS

Crossref

Ghent University Academic Bibliography

University of East Anglia digital repository

Lyn kinase regulates egress of flaviviruses in autophagosome-derived organelles

Author: Eric Spooner
Joseph Ashour
Lewis Yu Lam Siu
Matthew J Evans
Ming Yuan Li
Oreste Acuto
Peigang Wang
Roberto Bruzzone
Sumana Sanyal
Trupti Shivaprasad Naik
Xiaohan Yang
Yongping Lin
Publication venue: 'Springer Science and Business Media LLC'
Publication date: 01/10/2020
Field of study

Egress of flaviviruses and involved host pathways are not well understood. Here, the authors show that Lyn is a critical host kinase for Dengue and Zika virus egress resulting in infectious virus progenies within autophagosome-derived vesicles, which might help the virus to evade antibody responses

Directory of Open Access Journals

Consensus and diversity in the management of varicocele for male infertility: Results of a global practice survey and comparison with guidelines and recommendations

Author: Acosta Herik
Adamyan Aram
Adriansjah Ricky
Agarwal Ashok
Aghamajidi Azin
Ahmed Abdelkareem
Ahn Sun Tae
Akhavizadegan Hamed
Al Khalidi Noora
Al-Marhoon Mohamed S.
Alali Hamed
Alarbid Abdullah
Albano German Jose
Alhajeri Faisal
Alhathal Naif
Alkandari Mohammad H.
Alsuhaibani Shaheed
Altan Mesut
Alvarez Juan G.
Alves Marco
Amano Toshiyasu
Ambar Rafael F.
Arafa Mohamed
Arslan Umut
Atmoko Widi
Avidor-Reiss Tomer
Avoyan Armen E.
Aydos Kaan
Aşçı Ahmet
Babaei Mehdi
Bahar Fahmi
Bakırcıoğlu Mustafa Emre
Balercia Giancarlo
Banihani Saleem Ali
Barrett Trenton
Baser Aykut
Bendayan Marion
Birowo Ponco
Blecher Gideon
Boeri Luca
Boitrelle Florence
Borges Edson
Bouker Amin
Bouzouita Abderrazak
Bowa Kasonde
Brodjonegoro Sakti
Busetto Gian Maria
Böcü Kadir
Calogero Aldo E.
Cannarella Rossella
Capogrosso Paolo
Capogrosso Paolo
Caroppo Ettore
Castañé Eduard Ruiz
Castiglioni Fabrizio
Ceyhan Erman
Cheng Bryan Kwun-Chung
Cheng Yu-Sheng
Chiba Koji
Chiu Peter Ka-Fung
Cho Chak-Lam
Chua Jo Ben M.
Chung Eric
Cito Gianmartin
Colombo Fulvio
Colpi Giovanni M.
Condorelli Rosita Angela
Crafa Andrea
Cruz Natalio
Dada Rima
Darbandi Mahsa
Darbandi Sara
Das Partha
de la Rosette Jean J. M. C. H.
Diaz Sofia Ines Leonardi
Diemer Thorsten
Dimitriadis Fotios
Dolati Parisa
Dong Jie
Drakopoulos Panagiotos
Duarsa Gede Wirya Kusuma
Durairajanayagam Damayanthi
Duran Mesut Berkan
Dy Jun
El Meliegy Amr
El-Assmy Ahmed
El-Sakka Ahmed I.
Elbardisi Haitham
Elkhouly Mohamed
Erkan Bircan Kolbaşı
Evenson Don
Evgeni Evangelini
Eze Balantine
Falcone Marco
Farkouh Ala'a
Finelli Renata
Finocchi Federica
Fode Mikkel
Franco Giorgio
Fukuhara Shinichiro
Gadda Franco
Garrido Nicolas
Gava Marcelo M.
Ghayda Ramy Abou
Gherabi Nazim
Gilani Mohammad Ali Sadighi
Giulioni Carlo
Glina Sidney
Gopalakrishnan Sreelatha
Gökalp Fatih
Güdeloğlu Ahmet
Gül Murat
Güneş Sezgin
Hakim Lukman
Hamoda Taha Abo-Almagd Abdel-Meguid
Harraz Ahmed M.
Hatzichristodoulou Georgios
Hazır Berk
Hehemann Marah
Henkel Ralf
Henrique Raphael
Ho Christopher C.K.
Homa Sheryl
Hotaling Jim
Huyghe Eric
Ibrahim Wael
Javed Qaisar
Jayasena Channa N.
Jenkins Lawrence
Jensen Christian Fuglesang S.
Jezek Davor
Jindal Sunil
Kadıoğlu Ateş
Kafetzis Dimitrios
Kahraman Oğuzhan
Kaiyal Raneen Sawaid
Kalkanlı Arif
Kamath Mohan S.
Kandil Hussein
Karna Keshab Kumar
Karthikeyan Vilvapathy Senguttuvan
Kato Yuki
Kattan Mohamed S.
Kattan Said
Kavoussi Parviz
Kerkeni Walid
Kesari Kavindra Kumar
Keskin Hakan
Khalafalla Kareim
Khalili Mohamed
Kim Shannon Hee Kyung
King Mak Siu
Kirkman-Brown Jackson
Ko Edmund
Kosgi Raghavender
Kothari Priyank
Krawetz Stephen
Kulaksız Deniz
Kumar Vijay
Kuroda Shinnosuke
La Vignera Sandro
Le Tan V.
Lee Dong Sup
Lee Joe
Lewis Sheena E.M.
Liguori Giovanni
Lin Haocheng
Lin Tsung Yen
Lo Ka Lun
Lombardo Francesco
Magsanoc Nikko
Makarounis Konstantinos
Malhotra Vineet
Marmar Joel
Martinez Marlon
Micic Sava
Mierzwa Tiago Cesar
Minhas Suks
Mogharabian Nasser
Molina Juan Manuel Corral
Moreno-Sepulveda Jose
Morimoto Yoshiharu
Mostafa Taymour
Moussa Mohamad A.
Mutambirwa Shingai
Nagao Koichi
Nago Mitsuru
Nasr-Esfahani Mohammad Hossein
Ngoo Kay Seong
Nguyen Quang
Noegroho Bambang Sasongko
Okada Keisuke
Ong Teng Aik
Osman Yasser
Palani Ayad
Parekattil Sijo
Parekh Neel
Park Hyun Jun
Park Nam Cheol
Patel Premal
Paul Gustavo Marquesine
Perovic Dragoljub
Pescatori Edoardo
Peña Marcelo Rodriguez
Phuoc Nguyen Ho Vinh
Pinggera Germar-Michael
Puigvert Ana
Purnomo Basuki
Rajmil Osvaldo
Rambhatla Amarnath
Ramsay Jonathan
Razi Mazdak
Rocco Lucia
Rolitsky Sarah
Rosas Israel Maldonado
Roychoudhury Shubhadeep
Russo Giorgio Ivan
Sabbaghian Marjan
Sajadi Hesamoddin
Saleh Ramadan
Sallam Hassan N.
Salvio Gianmaria
Salzano Ciro
Santos Ferreira
Sarıkaya Selçuk
Satyagraha Paksi
Saïs-Hamza Eminej
Schon Samantha
Seo Ju Tae
Shah Rupin
Shin Jae Il
Shokeir Ahmed
Shoshany Ohad
Siddiqi Kashif
Simopoulou Mara
Sindhwani Puneet
Singh Rajender
Smith Ryan P.
Sodeifi Niloofar
Soebadi Mohammad Ayodhia
Sofikitis Nikolaos
Sogutdelen Emrullah
Sokolakis Ioannis
Son Hwancheol
Sonksen Jens
Spinola e Silva Rodrigo
Stember Doron
Tadros Nicholas
Takeshima Teppei
Tan Ronny
Taniguchi Hisanori
Tavalaee Marziyeh
Teo Colin
Tien Dung Mai Ba
Timpano Massimiliano
Toprak Tuncay
Trost Landon
Tsangaris George
Tsioulou Petroula A.
Tsujimura Akira
Umemoto Yukihiro
Uğur Muhammet Raşit
Vij Sarah
Vogiatzi Paraskevi
Vučinić Miroslav
Woo Wongi
Wu Han
Wurzacher Jana
Yuan Yiming
Yumura Yasushi
Zilaitiene Birute
Zini Armand
Ziouziou Imad
Zylbersztejn Daniel Suslik
Çalık Gökhan
Çeker Gökhan
Publication venue: 'Korean Society for Sexual Medicine and Andrology'
Publication date: 01/01/2022
Field of study

Purpose: Varicocele is a common problem among infertile men. Varicocele repair (VR) is frequently performed to improve semen parameters and the chances of pregnancy. However, there is a lack of consensus about the diagnosis, indications for VR and its outcomes. The aim of this study was to explore global practice patterns on the management of varicocele in the context of male infertility. Materials and Methods: Sixty practicing urologists/andrologists from 23 countries contributed 382 multiple-choice-questions pertaining to varicocele management. These were condensed into an online questionnaire that was forwarded to clinicians involved in male infertility management through direct invitation. The results were analyzed for disagreement and agreement in practice patterns and, compared with the latest guidelines of international professional societies (American Urological Association [AUA], American Society for Reproductive Medicine [ASRM], and European Association of Urology [EAU]), and with evidence emerging from recent systematic reviews and meta-analyses. Additionally, an expert opinion on each topic was provided based on the consensus of 16 experts in the field. Results: The questionnaire was answered by 574 clinicians from 59 countries. The majority of respondents were urologists/uro-andrologists. A wide diversity of opinion was seen in every aspect of varicocele diagnosis, indications for repair, choice of technique, management of sub-clinical varicocele and the role of VR in azoospermia. A significant proportion of the responses were at odds with the recommendations of AUA, ASRM, and EAU. A large number of clinical situations were identified where no guidelines are available. Conclusions: This study is the largest global survey performed to date on the clinical management of varicocele for male infertility. It demonstrates: 1) a wide disagreement in the approach to varicocele management, 2) large gaps in the clinical practice guidelines from professional societies, and 3) the need for further studies on several aspects of varicocele management in infertile men

İstanbul Medipol University Institutional Repository