635 research outputs found
Boty-II, a novel LTR retrotransposon in Botrytis cinerea B05.10 revealed by genomic sequence
Botrytis cinerea is a necrotrophic pathogen causing pre- and
post-harvest diseases in at least 235 plant species. It manifests
extraordinary genotype and phenotype variation. One of the causes of
this variation is transposable elements. Two transposable elements have
been discovered in this fungus, the retrotransposon (Boty), and the
transposon (Flipper). In this work, two complete (Boty-II-76 and
Boty-II-103) and two partial (Boty-II-95 and Boty-II-141) long terminal
repeat (LTR) retrotransposons were identified by an in silico genomic
sequence analysis. Boty-II-76 and Boty-II-103 contain 6439 bp
nucleotides with a pair of LTRs at both ends, and an internal deduced
pol gene encoding a polyprotein with reverse transcriptase and DDE
integrase domains. They are flanked by 5 bp direct repeats (ACCAT,
CTTTC). In Boty-II-141, two LTRs at both ends, and a partial internal
pol gene encoding a protein with a DDE integrase domain were
identified. In Boty-II-95, a right LTR and a partial internal pol gene
encoding a protein with no conserved domains were identified. Boty-II
uses a self-priming mechanism to initiate synthesis of reverse
transcripts. The sequence of the presumed primer binding site for
first-strand reverse transcription is 5'-TTGTACCAT-3'. The
polypurine-rich sequence for plus-strand DNA synthesis is
5'-GCCTTGAGCGGGGGGTAC-3'. Fourteen Boty-II LTRs that contain 125-158 bp
nucleotides and share 69.1 ~ 100% identities with the short inverted
terminal repeats of 5 bp (TGTCA\u2026TGACA) were discovered. Analysis
of structural features and phylogeny revealed that Boty-II is a novel
LTR retrotransposon. It could potentially be used as a novel molecular
marker for the investigation of genetic variation in B. cinerea
Knockout of p75 neurotrophin receptor attenuates the hyperphosphorylation of Tau in pR5 mouse model
p75 neurotrophin receptor (p75NTR) has been implicated in Alzheimer's disease (AD). However, whether p75NTR is involved in Tau hyperphosphorylation, one of the pathologies observed in AD, remains unclear. In our previous study, the extracellular domain of p75NTR blocked amyloid beta (Aβ) toxicity and attenuated Aβ-induced Tau hyperphosphorylation. Here we show that, in the absence of Aβ, p75NTR regulates Tau phosphorylation in the transgenic mice with the P301L human Tau mutation (pR5). The knockout of p75NTR in pR5 mice attenuated the phosphorylation of human Tau. In addition, the elevated activity of kinases responsible for Tau phosphorylation including glycogen synthase kinase 3 beta; cyclin-dependent-kinase 5; and Rho-associated protein kinase was also inhibited when p75NTR is knocked out in pR5 mice at 9 months of age. The increased caspase-3 activity observed in pR5 mice was also abolished in the absence of p75NTR. Our study also showed that p75NTR is required for Aβ- and pro-brain derived neurotrophin factor (proBDNF)-induced Tau phosphorylation, in vitro. Overall, our data indicate that p75NTR is required for Tau phosphorylation, a key event in the formation of neurofibrillary tangles, another hallmark of AD. Thus, targeting p75NTR could reduce or prevent the pathologic hyperphosphorylation of Tau.Noralyn B. Maùucat-Tan, Lin-Lin Shen, Larisa Bobrovskaya, Mohammed Al-hawwas, Fiona H. Zhou, Yan-Jiang Wang, Xin-Fu Zho
Thin-Film Metamaterials called Sculptured Thin Films
Morphology and performance are conjointed attributes of metamaterials, of
which sculptured thin films (STFs) are examples. STFs are assemblies of
nanowires that can be fabricated from many different materials, typically via
physical vapor deposition onto rotating substrates. The curvilinear--nanowire
morphology of STFs is determined by the substrate motions during fabrication.
The optical properties, especially, can be tailored by varying the morphology
of STFs. In many cases prototype devices have been fabricated for various
optical, thermal, chemical, and biological applications.Comment: to be published in Proc. ICTP School on Metamaterials (Augsut 2009,
Sibiu, Romania
Crossovers in Unitary Fermi Systems
Universality and crossover is described for attractive and repulsive
interactions where, respectively, the BCS-BEC crossover takes place and a
ferromagnetic phase transition is claimed. Crossovers are also described for
optical lattices and multicomponent systems. The crossovers, universal
parameters and phase transitions are described within the Leggett and NSR
models and calculated in detail within the Jastrow-Slater approximation. The
physics of ultracold Fermi atoms is applied to neutron, nuclear and quark
matter, nuclei and electrons in solids whenever possible. Specifically, the
differences between optical lattices and cuprates is discussed w.r.t.
antiferromagnetic, d-wave superfluid phases and phase separation.Comment: 50 pages, 15 figures. Contribution to Lecture Notes in Physics
"BCS-BEC crossover and the Unitary Fermi Gas" edited by W. Zwerge
First direct measurement of 12C (12C,n) 23Mg at stellar energies
Š 2016 Owned by the authors, published by EDP Sciences. Neutrons produced by the carbon fusion reaction12C(12C,n)23Mg play an important role in stellar nucleosynthesis. Past studies have shown large discrepancies between experimental data and theory, leading to an uncertain cross section extrapolation at astrophysical energies. We present the first direct measurement which extends deep into the astrophysical energy range along with a new and improved extrapolation technique based on experimental data from the mirror reaction12C(12C,p)23Na. The new reaction rate has been determined with a well-defined uncertainty which exceeds the precision required by astrophysics models. Using our constrained rate, we find that12C(12C,n)23Mg is crucial to the production of Na and Al in Pop-III Pair Instability Supernovae
Topologically guided tuning of Zr-MOF pore structures for highly selective separation of C6 alkane isomers
As an alternative technology to energy intensive distillations, adsorptive separation by porous solids offers lower energy cost and higher efficiency. Herein we report a topology-directed design and synthesis of a series of Zr-based metal-organic frameworks with optimized pore structure for efficient separation of C6 alkane isomers, a critical step in the petroleum refining process to produce gasoline with high octane rating. Zr6O4(OH)4(bptc)3 adsorbs a large amount of n-hexane but excluding branched isomers. The n-hexane uptake is ~70% higher than that of a benchmark adsorbent, zeolite-5A. A derivative structure, Zr6O4(OH)8(H2O)4(abtc)2, is capable of discriminating all three C6 isomers and yielding a high separation factor for 3-methylpentane over 2,3-dimethylbutane. This property is critical for producing gasoline with further improved quality. Multicomponent breakthrough experiments provide a quantitative measure of the capability of these materials for separation of C6 alkane isomers. A detailed structural analysis reveals the unique topology, connectivity and relationship of these compounds
Measurement of the Bottom-Strange Meson Mixing Phase in the Full CDF Data Set
We report a measurement of the bottom-strange meson mixing phase \beta_s
using the time evolution of B0_s -> J/\psi (->\mu+\mu-) \phi (-> K+ K-) decays
in which the quark-flavor content of the bottom-strange meson is identified at
production. This measurement uses the full data set of proton-antiproton
collisions at sqrt(s)= 1.96 TeV collected by the Collider Detector experiment
at the Fermilab Tevatron, corresponding to 9.6 fb-1 of integrated luminosity.
We report confidence regions in the two-dimensional space of \beta_s and the
B0_s decay-width difference \Delta\Gamma_s, and measure \beta_s in [-\pi/2,
-1.51] U [-0.06, 0.30] U [1.26, \pi/2] at the 68% confidence level, in
agreement with the standard model expectation. Assuming the standard model
value of \beta_s, we also determine \Delta\Gamma_s = 0.068 +- 0.026 (stat) +-
0.009 (syst) ps-1 and the mean B0_s lifetime, \tau_s = 1.528 +- 0.019 (stat) +-
0.009 (syst) ps, which are consistent and competitive with determinations by
other experiments.Comment: 8 pages, 2 figures, Phys. Rev. Lett 109, 171802 (2012
Search for a W' boson decaying to a bottom quark and a top quark in pp collisions at sqrt(s) = 7 TeV
Results are presented from a search for a W' boson using a dataset
corresponding to 5.0 inverse femtobarns of integrated luminosity collected
during 2011 by the CMS experiment at the LHC in pp collisions at sqrt(s)=7 TeV.
The W' boson is modeled as a heavy W boson, but different scenarios for the
couplings to fermions are considered, involving both left-handed and
right-handed chiral projections of the fermions, as well as an arbitrary
mixture of the two. The search is performed in the decay channel W' to t b,
leading to a final state signature with a single lepton (e, mu), missing
transverse energy, and jets, at least one of which is tagged as a b-jet. A W'
boson that couples to fermions with the same coupling constant as the W, but to
the right-handed rather than left-handed chiral projections, is excluded for
masses below 1.85 TeV at the 95% confidence level. For the first time using LHC
data, constraints on the W' gauge coupling for a set of left- and right-handed
coupling combinations have been placed. These results represent a significant
improvement over previously published limits.Comment: Submitted to Physics Letters B. Replaced with version publishe
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