824 research outputs found
A computational approach for modeling the biological olfactory system during an odor discrimination task using spiking neuron
Correlated dynamics in egocentric communication networks
We investigate the communication sequences of millions of people through two
different channels and analyze the fine grained temporal structure of
correlated event trains induced by single individuals. By focusing on
correlations between the heterogeneous dynamics and the topology of egocentric
networks we find that the bursty trains usually evolve for pairs of individuals
rather than for the ego and his/her several neighbors thus burstiness is a
property of the links rather than of the nodes. We compare the directional
balance of calls and short messages within bursty trains to the average on the
actual link and show that for the trains of voice calls the imbalance is
significantly enhanced, while for short messages the balance within the trains
increases. These effects can be partly traced back to the technological
constrains (for short messages) and partly to the human behavioral features
(voice calls). We define a model that is able to reproduce the empirical
results and may help us to understand better the mechanisms driving technology
mediated human communication dynamics.Comment: 7 pages, 6 figure
A 15.65 solar mass black hole in an eclipsing binary in the nearby spiral galaxy Messier 33
Stellar-mass black holes are discovered in X-ray emitting binary systems,
where their mass can be determined from the dynamics of their companion stars.
Models of stellar evolution have difficulty producing black holes in close
binaries with masses >10 solar masses, which is consistent with the fact that
the most massive stellar black holes known so all have masses within 1 sigma of
10 solar masses. Here we report a mass of 15.65 +/- 1.45 solar masses for the
black hole in the recently discovered system M33 X-7, which is located in the
nearby galaxy Messier 33 (M33) and is the only known black hole that is in an
eclipsing binary. In order to produce such a massive black hole, the progenitor
star must have retained much of its outer envelope until after helium fusion in
the core was completed. On the other hand, in order for the black hole to be in
its present 3.45 day orbit about its 70.0 +/- 6.9 solar mass companion, there
must have been a ``common envelope'' phase of evolution in which a significant
amount of mass was lost from the system. We find the common envelope phase
could not have occured in M33 X-7 unless the amount of mass lost from the
progenitor during its evolution was an order of magnitude less than what is
usually assumed in evolutionary models of massive stars.Comment: To appear in Nature October 18, 2007. Four figures (one color figure
degraded). Differs slightly from published version. Supplementary Information
follows in a separate postin
Colliding AdS gravitational shock waves in various dimensions and holography
The formation of marginally trapped surfaces in the off-center collision of
two shock waves on AdS_D (with D=4,5,6,7 and 8) is studied numerically. We
focus on the case when the two waves collide with nonvanishing impact parameter
while the sources are located at the same value of the holographic coordinate.
In all cases a critical value of the impact parameter is found above which no
trapped surface is formed. The numerical results show the existence of a simple
scaling relation between the critical impact parameter and the energy of the
colliding waves. Using the isometries of AdS_D we relate the solutions obtained
to the ones describing the collision of two waves with a purely holographic
impact parameter. This provides a gravitational dual for the head-on collision
of two lumps of energy of unequal size.Comment: 25 pages, 11 figures. v2: minor changes, typos corrected. To appear
in JHE
Solving Nonlinear Parabolic Equations by a Strongly Implicit Finite-Difference Scheme
We discuss the numerical solution of nonlinear parabolic partial differential
equations, exhibiting finite speed of propagation, via a strongly implicit
finite-difference scheme with formal truncation error . Our application of interest is the spreading of
viscous gravity currents in the study of which these type of differential
equations arise. Viscous gravity currents are low Reynolds number (viscous
forces dominate inertial forces) flow phenomena in which a dense, viscous fluid
displaces a lighter (usually immiscible) fluid. The fluids may be confined by
the sidewalls of a channel or propagate in an unconfined two-dimensional (or
axisymmetric three-dimensional) geometry. Under the lubrication approximation,
the mathematical description of the spreading of these fluids reduces to
solving the so-called thin-film equation for the current's shape . To
solve such nonlinear parabolic equations we propose a finite-difference scheme
based on the Crank--Nicolson idea. We implement the scheme for problems
involving a single spatial coordinate (i.e., two-dimensional, axisymmetric or
spherically-symmetric three-dimensional currents) on an equispaced but
staggered grid. We benchmark the scheme against analytical solutions and
highlight its strong numerical stability by specifically considering the
spreading of non-Newtonian power-law fluids in a variable-width confined
channel-like geometry (a "Hele-Shaw cell") subject to a given mass
conservation/balance constraint. We show that this constraint can be
implemented by re-expressing it as nonlinear flux boundary conditions on the
domain's endpoints. Then, we show numerically that the scheme achieves its full
second-order accuracy in space and time. We also highlight through numerical
simulations how the proposed scheme accurately respects the mass
conservation/balance constraint.Comment: 36 pages, 9 figures, Springer book class; v2 includes improvements
and corrections; to appear as a contribution in "Applied Wave Mathematics II
In-Line estimation of the standard colour index of citrus fruits using a computer vision system developed for a mobile platform
The final publication is available at Springer via http://dx.doi.org/10.1007/s11947-012-1015-2A key aspect for the consumer when it comes to deciding on a particular product is the colour. In order to make fruit available to consumers as early as possible, the collection of oranges and mandarins begins before they ripen fully and reach their typical orange colour. As a result, they are therefore subjected to certain degreening treatments, depending on their standard colour citrus index at harvest. Recently, a mobile platform that incorporates a computer vision system capable of pre-sorting the fruit while it is being harvested has been developed as an aid in the harvesting task. However, due to the restrictions of working in the field, the computer vision system developed for this machine is limited in its technology and processing capacity compared to conventional systems. This work shows the optimised algorithms for estimating the colour of citrus in-line that were developed for this mobile platform and its performance is evaluated against that of a spectrophotometer used as a reference in the analysis of colour in food. The results obtained prove that our analysis system predicts the colour index of citrus with a good reliability (R2 = 0.925) working in real time. Findings also show that it is effective for classifying harvested fruits in the field according to their colour. © 2012 Springer Science+Business Media New York.This work was partially funded by the INIA through research project RTA2009-00118-C02-01 with the support of European FEDER funds, and by the project PAID-05-11-2745, Vicerectorat d'Investigacio, Universitat Politecnica de Valencia.Vidal, A.; Talens Oliag, P.; Prats-Montalbán, JM.; Cubero García, S.; Albert Gil, FE.; Blasco Ivars, J. (2013). In-Line estimation of the standard colour index of citrus fruits using a computer vision system developed for a mobile platform. Food and Bioprocess Technology. 6(12):3412-3419. https://doi.org/10.1007/s11947-012-1015-2S34123419612Arzate-Vázquez, I., Chanona-Pérez, J. J., Perea-Flores, M. J., Calderón-Domínguez, G., Moreno-Armendáriz, M. A., Calvo, H., Godoy-Calderón, S., Quevedo, R., & Gutiérrez-López, G. (2011). Image processing applied to classification of avocado variety Hass (Persea americana Mill.) during the ripening process. Food and Bioprocess Technology, 4(7), 1307–1313.Blasco, J., Aleixos, N., Cubero, S., Gómez-Sanchis, J., & Moltó, E. (2009). Automatic sorting of satsuma (Citrus unshiu) segments using computer vision and morphological features. Computers and Electronics in Agriculture, 66, 1–8.Campbell, B. L., Nelson, R. G., Ebel, C. E., Dozier, W. A., Adrian, J. L., & Hockema, B. R. (2004). Fruit quality characteristics that affect consumer preferences for satsuma mandarins. HortScience, 39(7), 1664–1669.Cavazza, A., Corradini, C., Rinaldi, M., Salvadeo, P., Borromei, C., & Massini, R. (2012). Evaluation of pasta thermal treatment by determination of carbohydrates, furosine, and color indices. Food and Bioprocess Technology. doi: 10.1007/s11947-012-0906-6 . In-press.Cubero, S., Aleixos, N., Moltó, E., Gómez-Sanchis, J., & Blasco, J. (2011). Advances in machine vision applications for automatic inspection and quality evaluation of fruits and vegetables. Food and Bioprocess Technology, 4(4), 487–504.Cubero, S., Moltó, E., Gutiérrez, A., Aleixos, N., García-Navarrete, O. L., Juste, F., & Blasco, J. (2010). Real-time inspection of fruit on a mobile harvesting platform in field conditions using computer vision. Progress in Agricultural Engineering Science, 6, 1–16.Díaz, R., Faus, G., Blasco, M., Blasco, J., & Moltó, E. (2000). The application of a fast algorithm for the classification of olives by machine vision. Food Research International, 33, 305–309.DOGV (2006) Diari Oficial de la Comunitat Valenciana, 5346, 30321-30328.Gardner, J. L. (2007). Comparison of calibration methods for tristimulus colorimeters. Journal of Research of the National Institute of Standards and Technology, 112, 129–138.Hashim, N., Janius, R. B., Baranyai, L., Rahman, R. A., Osman, A., & Zude, M. (2011). Kinetic model for colour changes in bananas during the appearance of chilling injury symptoms. Food and Bioprocess Technology, 5(8), 2952–2963.HunterLab (2008): Applications note, 8(9), http://www.hunterlab.com/appnotes/an08_96a.pdf . Accessed September 2012.Hutchings, J. B., Luo, R., & Ji, W. (2002). Calibrated colour imaging analysis of food. In D. MacDougall (Ed.), Colour in Food (pp. 352–366). Cambridge: Woodhead Publishing.Jiménez-Cuesta MJ, Cuquerella J & Martínez-Jávega JM (1981) Determination of a color index for citrus fruit degreening. In Proc. of the International Society of Citriculture, Vol. 2, 750-753Kang, S. P., East, A. R., & Trujillo, F. J. (2008). Colour vision system evaluation of bicolour fruit: A case study with ‘B74’ mango. Postharvest Biology and Technology, 49, 77–85.Lang, C., & Hübert, T. (2011). A colour ripeness indicator for apples. Food and Bioprocess Technology, 5(8), 3244–3249.López-Camelo, A. F., & Gómez, P. A. (2004). Comparison of color indexes for tomato ripening. Horticultura Brasileira, 22(3), 534–537. http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0102-05362004000300006 .López-García, F., Andreu-García, A., Blasco, J., Aleixos, N., & Valiente, J. M. (2010). Automatic detection of skin defects in citrus fruits using a multivariate image analysis approach. Computers and Electronics in Agriculture, 71, 189–197.Lorente, D., Aleixos, N., Gómez-Sanchis, J., Cubero, S., García-Navarrete, O. L., & Blasco, J. (2012). Recent advances and applications of hyperspectral imaging for fruit and vegetable quality assessment. Food and Bioprocess Technology, 5(4), 1121–1142.Mendoza, F., Dejmek, P., & Aguilera, J. M. (2006). Calibrated color measurements of agricultural foods using image analysis. Postharvest Biology and Technology, 41, 285–295.Montgomery, D. C. (2005). Design and analysis of experiments, 6th ed. Tempe: Wiley.Noboru, O., & Robertson, A. R. (2005). Colorimetry. West Sussex: Wiley.Pathare, P. B., Opara, U. L., & Al-Said, F. A. (2012). Colour measurement and analysis in fresh and processed foods: a review. Food and Bioprocess Technology. doi: 10.1007/s11947-012-0867-9 . In-press.Quevedo, R. A., Aguilera, J. M., & Pedreschi, F. (2010). Colour of salmon fillets by computer vision and sensory panel. Food and Bioprocess Technology, 3, 637–643.Sahin, S., & Sumnu, S. G. (2006). Physical properties of foods. New York: Springer.Quevedo, R., Valencia, E., Alvarado, F., Ronceros, B., & Bastias, J. M. (2011). Comparison of whiteness index vs. fractal Fourier in the determination of bloom chocolate using image analysis. Food and Bioprocess Technology. doi: 10.1007/s11947-011-0729-x . In-press.Smith, T., & Guild, J. (1931). The C.I.E. colorimetric standards and their use. Transactions of the Optical Society, 33(3), 73–134.Yam, K. L., & Papadakis, S. E. (2004). A simple digital imaging method for measuring and analyzing color of food surfaces. Journal of Food Engineering, 61, 137–142
Solitary waves in the Nonlinear Dirac Equation
In the present work, we consider the existence, stability, and dynamics of
solitary waves in the nonlinear Dirac equation. We start by introducing the
Soler model of self-interacting spinors, and discuss its localized waveforms in
one, two, and three spatial dimensions and the equations they satisfy. We
present the associated explicit solutions in one dimension and numerically
obtain their analogues in higher dimensions. The stability is subsequently
discussed from a theoretical perspective and then complemented with numerical
computations. Finally, the dynamics of the solutions is explored and compared
to its non-relativistic analogue, which is the nonlinear Schr{\"o}dinger
equation. A few special topics are also explored, including the discrete
variant of the nonlinear Dirac equation and its solitary wave properties, as
well as the PT-symmetric variant of the model
Oncogenic BRAF, unrestrained by TGFβ-receptor signalling, drives right-sided colonic tumorigenesis.
Right-sided (proximal) colorectal cancer (CRC) has a poor prognosis and a distinct mutational profile, characterized by oncogenic BRAF mutations and aberrations in mismatch repair and TGFβ signalling. Here, we describe a mouse model of right-sided colon cancer driven by oncogenic BRAF and loss of epithelial TGFβ-receptor signalling. The proximal colonic tumours that develop in this model exhibit a foetal-like progenitor phenotype (Ly6a/Sca1+) and, importantly, lack expression of Lgr5 and its associated intestinal stem cell signature. These features are recapitulated in human BRAF-mutant, right-sided CRCs and represent fundamental differences between left- and right-sided disease. Microbial-driven inflammation supports the initiation and progression of these tumours with foetal-like characteristics, consistent with their predilection for the microbe-rich right colon and their antibiotic sensitivity. While MAPK-pathway activating mutations drive this foetal-like signature via ERK-dependent activation of the transcriptional coactivator YAP, the same foetal-like transcriptional programs are also initiated by inflammation in a MAPK-independent manner. Importantly, in both contexts, epithelial TGFβ-receptor signalling is instrumental in suppressing the tumorigenic potential of these foetal-like progenitor cells
Measurement of the Bottom-Strange Meson Mixing Phase in the Full CDF Data Set
We report a measurement of the bottom-strange meson mixing phase \beta_s
using the time evolution of B0_s -> J/\psi (->\mu+\mu-) \phi (-> K+ K-) decays
in which the quark-flavor content of the bottom-strange meson is identified at
production. This measurement uses the full data set of proton-antiproton
collisions at sqrt(s)= 1.96 TeV collected by the Collider Detector experiment
at the Fermilab Tevatron, corresponding to 9.6 fb-1 of integrated luminosity.
We report confidence regions in the two-dimensional space of \beta_s and the
B0_s decay-width difference \Delta\Gamma_s, and measure \beta_s in [-\pi/2,
-1.51] U [-0.06, 0.30] U [1.26, \pi/2] at the 68% confidence level, in
agreement with the standard model expectation. Assuming the standard model
value of \beta_s, we also determine \Delta\Gamma_s = 0.068 +- 0.026 (stat) +-
0.009 (syst) ps-1 and the mean B0_s lifetime, \tau_s = 1.528 +- 0.019 (stat) +-
0.009 (syst) ps, which are consistent and competitive with determinations by
other experiments.Comment: 8 pages, 2 figures, Phys. Rev. Lett 109, 171802 (2012
Explaining Support Vector Machines: A Color Based Nomogram.
PROBLEM SETTING: Support vector machines (SVMs) are very popular tools for classification, regression and other problems. Due to the large choice of kernels they can be applied with, a large variety of data can be analysed using these tools. Machine learning thanks its popularity to the good performance of the resulting models. However, interpreting the models is far from obvious, especially when non-linear kernels are used. Hence, the methods are used as black boxes. As a consequence, the use of SVMs is less supported in areas where interpretability is important and where people are held responsible for the decisions made by models. OBJECTIVE: In this work, we investigate whether SVMs using linear, polynomial and RBF kernels can be explained such that interpretations for model-based decisions can be provided. We further indicate when SVMs can be explained and in which situations interpretation of SVMs is (hitherto) not possible. Here, explainability is defined as the ability to produce the final decision based on a sum of contributions which depend on one single or at most two input variables. RESULTS: Our experiments on simulated and real-life data show that explainability of an SVM depends on the chosen parameter values (degree of polynomial kernel, width of RBF kernel and regularization constant). When several combinations of parameter values yield the same cross-validation performance, combinations with a lower polynomial degree or a larger kernel width have a higher chance of being explainable. CONCLUSIONS: This work summarizes SVM classifiers obtained with linear, polynomial and RBF kernels in a single plot. Linear and polynomial kernels up to the second degree are represented exactly. For other kernels an indication of the reliability of the approximation is presented. The complete methodology is available as an R package and two apps and a movie are provided to illustrate the possibilities offered by the method
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