Evaluation of Trace Alignment Quality and its Application in Medical Process Mining

Trace alignment algorithms have been used in process mining for discovering the consensus treatment procedures and process deviations. Different alignment algorithms, however, may produce very different results. No widely-adopted method exists for evaluating the results of trace alignment. Existing reference-free evaluation methods cannot adequately and comprehensively assess the alignment quality. We analyzed and compared the existing evaluation methods, identifying their limitations, and introduced improvements in two reference-free evaluation methods. Our approach assesses the alignment result globally instead of locally, and therefore helps the algorithm to optimize overall alignment quality. We also introduced a novel metric to measure the alignment complexity, which can be used as a constraint on alignment algorithm optimization. We tested our evaluation methods on a trauma resuscitation dataset and provided the medical explanation of the activities and patterns identified as deviations using our proposed evaluation methods.Comment: 10 pages, 6 figures and 5 table

Photocatalytic evidence of the rutile-to-anatase electron transfer in titania

Layered anatase-rutile titania thin-films were synthesized via atmospheric-pressure chemical vapor deposition and characterized using X-ray diffraction, Raman spectroscopy and electron microscopy. The interposition of an amorphous TiO2-based interlayer allowed direct vapor deposition of anatase on a rutile substrate, which is otherwise hindered by templating. This resourceful approach and the subsequent crystallization of the amorphous layer after annealing of the films allowed investigation on the impact of an efficient interface of the two anatase-rutile phases in the photodegradation of a model organic pollutant. Clear evidence is presented on the synergy between the two polymorphs and more importantly, on the charge flow across the interface, which, against much conventional understanding, it involves electron transfer from rutile to anatase and is in agreement with a recent theoretical model and electron paramagnetic resonance data. Here, an increasing density of trapped electrons on the anatase surface of the A/R film is confirmed by photoreduction of silver. This observation is attributed to a defect-free efficient contact between the two phases and the presence of small rutile particles that promote rapid electron transfer at the A-R interface of the films

The Giardia lamblia vsp gene repertoire: characteristics, genomic organization, and evolution

BACKGROUND:Giardia lamblia trophozoites colonize the intestines of susceptible mammals and cause diarrhea, which can be prolonged despite an intestinal immune response. The variable expression of the variant-specific surface protein (VSP) genes may contribute to this prolonged infection. Only one is expressed at a time, and switching expression from one gene to another occurs by an epigenetic mechanism.RESULTS:The WB Giardia isolate has been sequenced at 10x coverage and assembled into 306 contigs as large as 870 kb in size. We have used this assembly to evaluate the genomic organization and evolution of the vsp repertoire. We have identified 228 complete and 75 partial vsp gene sequences for an estimated repertoire of 270 to 303, making up about 4% of the genome. The vsp gene diversity includes 30 genes containing tandem repeats, and 14 vsp pairs of identical genes present in either head to head or tail to tail configurations (designated as inverted pairs), where the two genes are separated by 2 to 4 kb of non-coding DNA. Interestingly, over half the total vsp repertoire is present in the form of linear gene arrays that can contain up to 10 vsp gene members. Lastly, evidence for recombination within and across minor clades of vsp genes is provided.CONCLUSIONS:The data we present here is the first comprehensive analysis of the vsp gene family from the Genotype A1 WB isolate with an emphasis on vsp characterization, function, evolution and contributions to pathogenesis of this important pathogen.This item is part of the UA Faculty Publications collection. For more information this item or other items in the UA Campus Repository, contact the University of Arizona Libraries at [email protected]

Fabrication of complex model oxide catalysts: Mo oxide supported on Fe3O4(111)

Industrial catalysts for the oxidation of methanol to formaldehyde consist of iron molybdate [Fe2(MoO4)3]. Using a variety of techniques we have previously shown that the surface of these catalysts is segregated in MoO3, and in order to understand the relationship between surface structure and reactivity for these systems we have begun a surface science study of this system using model, single crystal oxides. Model catalysts of molybdenum oxide nanoparticles and films on an Fe3O4 (111) single crystal were fabricated by the hot-filament metal oxide deposition technique (HFMOD), where molybdenum oxides were produced using a molybdenum filament heated in an oxygen atmosphere. Low energy electron diffraction (LEED), X-ray photoelectron spectroscopy (XPS), and scanning tunnelling microscopy (STM) have been used to investigate molybdenum oxide nanoparticles and films deposited on Fe3O4 (111). The molybdenum oxide film forms in the highest oxidation state, 6+, and is remarkably stable to thermal treatment, remaining on the surface to at least 973 K. However, above ~ 573 K cation mixing begins to occur, forming an iron molybdate structure, but the process is strongly Mo coverage dependent

Bortezomib/docetaxel combination therapy in patients with anthracycline-pretreated advanced/metastatic breast cancer: a phase I/II dose-escalation study

The aim of this study was to determine the dose-limiting toxicities (DLTs) and maximum tolerated dose (MTD) of bortezomib plus docetaxel in patients with anthracycline-pretreated advanced/metastatic breast cancer. Forty-eight patients received up to eight 21-day cycles of docetaxel (60–100 mg m−2 on day 1) plus bortezomib (1.0–1.5 mg m−2 on days 1, 4, 8, and 11). Pharmacodynamic and pharmacokinetic analyses were performed in a subset of patients. Five patients experienced DLTs: grade 3 bone pain (n=1) and febrile neutropenia (n=4). The MTD was bortezomib 1.5 mg m−2 plus docetaxel 75 mg m−2. All 48 patients were assessable for safety and efficacy. The most common adverse events were diarrhoea, nausea, alopecia, asthenia, and vomiting. The most common grade 3/4 toxicities were neutropenia (44%), and febrile neutropenia and diarrhoea (each 19%). Overall patient response rate was 29%. Median time to progression was 5.4 months. In patients with confirmed response, median time to response was 1.3 months and median duration of response was 3.2 months. At the MTD, response rate was 38%. Pharmacokinetic characteristics of bortezomib/docetaxel were comparable with single-agent data. Addition of docetaxel appeared not to affect bortezomib inhibition of 20S proteasome activity. Mean alpha-1 acid glycoprotein concentrations increased from baseline at nearly all time points across different bortezomib dose levels. Bortezomib plus docetaxel is an active combination for anthracycline-pretreated advanced/metastatic breast cancer. The safety profile is manageable and consistent with the side effects of the individual agents

Homogeneous and heterogeneous catalysts for multicomponent reactions

[EN] Organic synthesis performed through multicomponent reactions is an attractive area of research in organic chemistry. Multicomponent reactions involve more than two starting reagents that couple in an exclusive ordered mode under the same reaction conditions to form a single product which contains the essential parts of the starting materials. Multicomponent reactions are powerful tools in modern drug discovery processes, because they are an important source of molecular diversity, allowing rapid, automated and high throughput generation of organic compounds. This review aims to illustrate progress in a large variety of catalyzed multicomponent reactions performed with acid, base and metal heterogeneous and homogeneous catalysts. Within each type of multicomponent approach, relevant products that can be obtained and their interest for industrial applications are presented.The authors wish to gratefully acknowledge the Generalitat Valenciana for the financial support in the project CONSOLIDER-INGENIO 2010 (CSD2009-00050)Climent Olmedo, MJ.; Corma Canós, A.; Iborra Chornet, S. (2012). Homogeneous and heterogeneous catalysts for multicomponent reactions. RSC Advances. 2(1):16-58. https://doi.org/10.1039/c1ra00807bS16582