BIOLOGICAL INVASION OF Corythucha ciliata IN GREEN URBAN SPACES IN PORTUGAL: A NICHE MODELING APPROACH USING MAXIMUM ENTROPY

Corythucha ciliata (Hemiptera: Tingidae) \ue9 um inseto nativo da Am\ue9rica do Norte que foi introduzido na Europa, pela It\ue1lia, em 1964. Desde ent\ue3o tem se expandido por toda a Europa, desconhecendo-se a data de chegada e a sua \ue1rea de distribui\ue7\ue3o em Portugal. Esta importante praga invasora alimenta-se na face inferior das folhas de pl\ue1tano, uma das mais importantes \ue1rvores ornamentais nos espa\ue7os verdes urbanos em Portugal, causando senesc\ueancia prematura e eventualmente morte, em casos de infesta\ue7\uf5es severas consecutivas. A modela\ue7\ue3o de nicho est\ue1 se tornando uma ferramenta cada vez mais importante na gest\ue3o de invas\uf5es biol\uf3gicas, tanto antes como depois da introdu\ue7\ue3o do organismo invasor. Neste estudo, o software MaxEnt (m\ue1xima entropia) foi usado na modela\ue7\ue3o da distribui\ue7\ue3o invasiva potencial de Corythucha ciliata em Portugal, a partir de um conjunto de vari\ue1veis ambientais e de dados de presen\ue7a do inseto, obtidos a partir da observa\ue7\ue3o de folhas de pl\ue1tanos amostrados por todo o pa\ueds. De acordo com o melhor modelo gerado pelo MaxEnt, as \ue1reas de maior adequabilidade potencial \ue0 invas\ue3o de Corythucha ciliata encontram-se no norte de Portugal apresentando o sul e as regi\uf5es de maior altitude do norte e centro adequabilidade reduzida ou nula. Observa\ue7\uf5es laboratoriais da biologia de Corythucha ciliata aliadas aos registos de aus\ueancia em v\ue1rias localidades do sul de Portugal e ocorr\ueancia predominante na metade norte de Espanha suportam o modelo desenvolvido. Por\ue9m, a valida\ue7\ue3o do modelo requer futuras prospec\ue7\uf5es nas \ue1reas de reduzida adequabilidade e onde a praga se encontrava virtualmente ausente no momento em que foi realizada a amostragem. Os modelos de adequabilidade podem ser usados como ferramenta auxiliar na tomada de decis\ue3o no que concerne \ue0 gest\ue3o dos espa\ue7os verdes.Corythucha ciliata (Hemiptera: Tingidae) is an insect native to North America which has been introduced into Europe, through Italy, in 1964. Since then it has expanded across Europe being its date of arrival and distributional range in Portugal unknown. This important invasive pest feeds on the underside of the leaves of sycamore trees, one of the most widespread ornamental tree in urban areas of Portugal, causing their premature senescence and eventually death, in case of consecutive severe infestations. Habitat modeling is becoming an increasingly important tool for managing biological invasions, either prior or after the introduction of the invasive organism. In this study the software MaxEnt (maximum entropy) was used to model the distribution of Corythucha ciliata in its Portuguese invasive range, from a set of environmental variables and georeferenced occurrence data obtained from observation of Platanus spp. leaves sampled all over the country. According to the best model developed, the areas of greater suitability to invasion of Corythucha ciliata are located in the northern portion of the country whereas the more southern and mountainous areas are of low or virtually null suitability. Laboratory observations of Corythucha ciliata biology allied to records of pest absence across several localities of southern Portugal and predominant occurrence in the northern half of Spain support the model developed. However, model validation requires future prospection in the areas of predicted reduced suitability and where the pest was virtually absent at the moment of sampling. Suitability models can be a useful tool for decision making in management of green spaces

Mortality and pulmonary complications in patients undergoing surgery with perioperative SARS-CoV-2 infection: an international cohort study

Background: The impact of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) on postoperative recovery needs to be understood to inform clinical decision making during and after the COVID-19 pandemic. This study reports 30-day mortality and pulmonary complication rates in patients with perioperative SARS-CoV-2 infection. Methods: This international, multicentre, cohort study at 235 hospitals in 24 countries included all patients undergoing surgery who had SARS-CoV-2 infection confirmed within 7 days before or 30 days after surgery. The primary outcome measure was 30-day postoperative mortality and was assessed in all enrolled patients. The main secondary outcome measure was pulmonary complications, defined as pneumonia, acute respiratory distress syndrome, or unexpected postoperative ventilation. Findings: This analysis includes 1128 patients who had surgery between Jan 1 and March 31, 2020, of whom 835 (74·0%) had emergency surgery and 280 (24·8%) had elective surgery. SARS-CoV-2 infection was confirmed preoperatively in 294 (26·1%) patients. 30-day mortality was 23·8% (268 of 1128). Pulmonary complications occurred in 577 (51·2%) of 1128 patients; 30-day mortality in these patients was 38·0% (219 of 577), accounting for 81·7% (219 of 268) of all deaths. In adjusted analyses, 30-day mortality was associated with male sex (odds ratio 1·75 [95% CI 1·28–2·40], p\textless0·0001), age 70 years or older versus younger than 70 years (2·30 [1·65–3·22], p\textless0·0001), American Society of Anesthesiologists grades 3–5 versus grades 1–2 (2·35 [1·57–3·53], p\textless0·0001), malignant versus benign or obstetric diagnosis (1·55 [1·01–2·39], p=0·046), emergency versus elective surgery (1·67 [1·06–2·63], p=0·026), and major versus minor surgery (1·52 [1·01–2·31], p=0·047). Interpretation: Postoperative pulmonary complications occur in half of patients with perioperative SARS-CoV-2 infection and are associated with high mortality. Thresholds for surgery during the COVID-19 pandemic should be higher than during normal practice, particularly in men aged 70 years and older. Consideration should be given for postponing non-urgent procedures and promoting non-operative treatment to delay or avoid the need for surgery. Funding: National Institute for Health Research (NIHR), Association of Coloproctology of Great Britain and Ireland, Bowel and Cancer Research, Bowel Disease Research Foundation, Association of Upper Gastrointestinal Surgeons, British Association of Surgical Oncology, British Gynaecological Cancer Society, European Society of Coloproctology, NIHR Academy, Sarcoma UK, Vascular Society for Great Britain and Ireland, and Yorkshire Cancer Research

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe

Morphology of fruits, seeds, seedlings and saplings of three species of Macrolobium Schreb. (Leguminosae, Caesalpinioideae) in the Brazilian Amazon floodplain

The evaluation of the post-germination phases of plants allows the recognition of transitional structures that support the relationships among taxa and their establishment. Together with fruit and seeds, seedlings and saplings provide useful characters for identifying many species. This study aimed to describe and characterize the morphology of the fruits, seeds, seedlings and saplings of Macrolobium acaciifolium, M. bifolium and M. pendulum, as well as to evaluate the ecological, taxonomic and phylogenetic value of the structures identified. In this work, the seeds were sown in plastic trays with sterilized sand and sawdust, without pre-germination treatment. The fruits of the three species are woody legumes, dehiscent fruit or indehiscent fruit. The seeds have seed coats with or without venation and variable embryos, with plumules differing among the three species; this trait can be helpful in distinguishing among the species studied. The seedlings are of the cryptocotylar-hypogeal-reserve or phanerocotylar-epigeal-reserve type. Macrolobium bifolium and M. pendulum are similar species, differing in only a few characters. These characters have taxonomic value and aid species identification. The characteristics of M. pendulum are described here for the first time

What makes the heart of Boa constrictor (Squamata: Boidae) beat faster?

Body size is highly correlated with metabolism, which in turn influences physiological rates such as heart rate. In general, heart rate is negatively influenced by the size of animal's body, but there is insufficient data corroborating this pattern in snakes. This study evaluated how body size affects heart rate in captive Boa constrictor Linnaeus, 1758. We measured the heart rate of 30 snakes using digital palpation and evaluated how this rate is influenced by body mass and sex using Analysis of Covariance (ANCOVA). The heart rate of the snakes was 58.8 ± 6.7 bpm (beats per minute). Body size, estimated as log-transformed body mass, negatively influenced heart rate (F1,28 = 10.27, p = 0.003, slope = -0.00004, R2 = 0.27), but sex had no effect (F1,27 = 0.07, p = 0.80). In conclusion, this result corroborates the negative relationship between body size and heart rate for snakes and reinforces the influence of related metabolic characteristics, such as body size, on the physiological parameters of snakes

Plant Antimicrobial Peptides: State of the Art, In Silico Prediction and Perspectives in the Omics Era

Even before the perception or interaction with pathogens, plants rely on constitutively guardian molecules, often specific to tissue or stage, with further expression after contact with the pathogen. These guardians include small molecules as antimicrobial peptides (AMPs), generally cysteine-rich, functioning to prevent pathogen establishment. Some of these AMPs are shared among eukaryotes (eg, defensins and cyclotides), others are plant specific (eg, snakins), while some are specific to certain plant families (such as heveins). When compared with other organisms, plants tend to present a higher amount of AMP isoforms due to gene duplications or polyploidy, an occurrence possibly also associated with the sessile habit of plants, which prevents them from evading biotic and environmental stresses. Therefore, plants arise as a rich resource for new AMPs. As these molecules are difficult to retrieve from databases using simple sequence alignments, a description of their characteristics and in silico (bioinformatics) approaches used to retrieve them is provided, considering resources and databases available. The possibilities and applications based on tools versus database approaches are considerable and have been so far underestimated