Particle Swarm Optimization Using Multiple Neighborhood Connectivity And Winner Take All Activation Applied To Biophysical Models Of Inferior Colliculus Neurons

Age-related hearing loss is a prevalent neurological disorder, affecting as many as 63% of adults over the age of 70. The inability to hear and understand speech is a cause of much distress in aged individuals and is becoming a major public health concern as age-related hearing loss has also been correlated with other neurological disorders such as Alzheimer\u27s dementia. The Inferior Colliculus (IC) is a major integrative auditory center, receiving excitatory and inhibitory inputs from several brainstem nuclei. This complex balance of excitation and inhibition gives rise to complex neural responses, which are measured in terms of firing rate as a given parameter is varied. A major obstacle in understanding the mechanisms involved in generating normal and aberrant auditory responses is estimating the strength and tuning of excitatory and inhibitory inputs that are integrated to form the output firing of IC neurons. To better understand IC response generation, biophysically accurate, conductance-based computational models were used to recreate IC frequency tuning responses. The problem of fitting response curves in vivo was approached using particle swarm optimization, an optimization paradigm which mimics social networks of flocking birds to solve problems. A new social network modeling winner-take-all activation found in visual neuron coding was developed in which agents are divided into social hierarchies and compete for leadership rights. This social network has shown good performance in benchmark optimization problems and is used to recreate IC frequency tuning responses which can be used to further understand pathological aging in the auditory system

A Comprehensive Survey on Particle Swarm Optimization Algorithm and Its Applications

Particle swarm optimization (PSO) is a heuristic global optimization method, proposed originally by Kennedy and Eberhart in 1995. It is now one of the most commonly used optimization techniques. This survey presented a comprehensive investigation of PSO. On one hand, we provided advances with PSO, including its modifications (including quantum-behaved PSO, bare-bones PSO, chaotic PSO, and fuzzy PSO), population topology (as fully connected, von Neumann, ring, star, random, etc.), hybridization (with genetic algorithm, simulated annealing, Tabu search, artificial immune system, ant colony algorithm, artificial bee colony, differential evolution, harmonic search, and biogeography-based optimization), extensions (to multiobjective, constrained, discrete, and binary optimization), theoretical analysis (parameter selection and tuning, and convergence analysis), and parallel implementation (in multicore, multiprocessor, GPU, and cloud computing forms). On the other hand, we offered a survey on applications of PSO to the following eight fields: electrical and electronic engineering, automation control systems, communication theory, operations research, mechanical engineering, fuel and energy, medicine, chemistry, and biology. It is hoped that this survey would be beneficial for the researchers studying PSO algorithms

Swarm intelligence techniques for optimization and management tasks insensor networks

The main contributions of this thesis are located in the domain of wireless sensor netorks. More in detail, we introduce energyaware algorithms and protocols in the context of the following topics: self-synchronized duty-cycling in networks with energy harvesting capabilities, distributed graph coloring and minimum energy broadcasting with realistic antennas. In the following, we review the research conducted in each case. We propose a self-synchronized duty-cycling mechanism for sensor networks. This mechanism is based on the working and resting phases of natural ant colonies, which show self-synchronized activity phases. The main goal of duty-cycling methods is to save energy by efficiently alternating between different states. In the case at hand, we considered two different states: the sleep state, where communications are not possible and energy consumption is low; and the active state, where communication result in a higher energy consumption. In order to test the model, we conducted an extensive experimentation with synchronous simulations on mobile networks and static networks, and also considering asynchronous networks. Later, we extended this work by assuming a broader point of view and including a comprehensive study of the parameters. In addition, thanks to a collaboration with the Technical University of Braunschweig, we were able to test our algorithm in the real sensor network simulator Shawn (http://shawn.sf.net). The second part of this thesis is devoted to the desynchronization of wireless sensor nodes and its application to the distributed graph coloring problem. In particular, our research is inspired by the calling behavior of Japanese tree frogs, whose males use their calls to attract females. Interestingly, as female frogs are only able to correctly localize the male frogs when their calls are not too close in time, groups of males that are located nearby each other desynchronize their calls. Based on a model of this behavior from the literature, we propose a novel algorithm with applications to the field of sensor networks. More in detail, we analyzed the ability of the algorithm to desynchronize neighboring nodes. Furthermore, we considered extensions of the original model, hereby improving its desynchronization capabilities.To illustrate the potential benefits of desynchronized networks, we then focused on distributed graph coloring. Later, we analyzed the algorithm more extensively and show its performance on a larger set of benchmark instances. The classical minimum energy broadcast (MEB) problem in wireless ad hoc networks, which is well-studied in the scientific literature, considers an antenna model that allows the adjustment of the transmission power to any desired real value from zero up to the maximum transmission power level. However, when specifically considering sensor networks, a look at the currently available hardware shows that this antenna model is not very realistic. In this work we re-formulate the MEB problem for an antenna model that is realistic for sensor networks. In this antenna model transmission power levels are chosen from a finite set of possible ones. A further contribution concerns the adaptation of an ant colony optimization algorithm --currently being the state of the art for the classical MEB problem-- to the more realistic problem version, the so-called minimum energy broadcast problem with realistic antennas (MEBRA). The obtained results show that the advantage of ant colony optimization over classical heuristics even grows when the number of possible transmission power levels decreases. Finally we build a distributed version of the algorithm, which also compares quite favorably against centralized heuristics from the literature.Las principles contribuciones de esta tesis se encuentran en el domino de las redes de sensores inalámbricas. Más en detalle, introducimos algoritmos y protocolos que intentan minimizar el consumo energético para los siguientes problemas: gestión autosincronizada de encendido y apagado de sensores con capacidad para obtener energía del ambiente, coloreado de grafos distribuido y broadcasting de consumo mínimo en entornos con antenas reales. En primer lugar, proponemos un sistema capaz de autosincronizar los ciclos de encendido y apagado de los nodos de una red de sensores. El mecanismo está basado en las fases de trabajo y reposo de las colonias de hormigas tal y como estas pueden observarse en la naturaleza, es decir, con fases de actividad autosincronizadas. El principal objectivo de este tipo de técnicas es ahorrar energía gracias a alternar estados de forma eficiente. En este caso en concreto, consideramos dos estados diferentes: el estado dormido, en el que los nodos no pueden comunicarse y el consumo energético es bajo; y el estado activo, en el que las comunicaciones propician un consumo energético elevado. Con el objetivo de probar el modelo, se ha llevado a cabo una extensa experimentación que incluye tanto simulaciones síncronas en redes móviles y estáticas, como simulaciones en redes asíncronas. Además, este trabajo se extendió asumiendo un punto de vista más amplio e incluyendo un detallado estudio de los parámetros del algoritmo. Finalmente, gracias a la colaboración con la Technical University of Braunschweig, tuvimos la oportunidad de probar el mecanismo en el simulador realista de redes de sensores, Shawn (http://shawn.sf.net). La segunda parte de esta tesis está dedicada a la desincronización de nodos en redes de sensores y a su aplicación al problema del coloreado de grafos de forma distribuida. En particular, nuestra investigación está inspirada por el canto de las ranas de árbol japonesas, cuyos machos utilizan su canto para atraer a las hembras. Resulta interesante que debido a que las hembras solo son capaces de localizar las ranas macho cuando sus cantos no están demasiado cerca en el tiempo, los grupos de machos que se hallan en una misma región desincronizan sus cantos. Basado en un modelo de este comportamiento que se encuentra en la literatura, proponemos un nuevo algoritmo con aplicaciones al campo de las redes de sensores. Más en detalle, analizamos la habilidad del algoritmo para desincronizar nodos vecinos. Además, consideramos extensiones del modelo original, mejorando su capacidad de desincronización. Para ilustrar los potenciales beneficios de las redes desincronizadas, nos centramos en el problema del coloreado de grafos distribuido que tiene relación con diferentes tareas habituales en redes de sensores. El clásico problema del broadcasting de consumo mínimo en redes ad hoc ha sido bien estudiado en la literatura. El problema considera un modelo de antena que permite transmitir a cualquier potencia elegida (hasta un máximo establecido por el dispositivo). Sin embargo, cuando se trabaja de forma específica con redes de sensores, un vistazo al hardware actualmente disponible muestra que este modelo de antena no es demasiado realista. En este trabajo reformulamos el problema para el modelo de antena más habitual en redes de sensores. En este modelo, los niveles de potencia de transmisión se eligen de un conjunto finito de posibilidades. La siguiente contribución consiste en en la adaptación de un algoritmo de optimización por colonias de hormigas a la versión más realista del problema, también conocida como broadcasting de consumo mínimo con antenas realistas. Los resultados obtenidos muestran que la ventaja de este método sobre heurísticas clásicas incluso crece cuando el número de posibles potencias de transmisión decrece. Además, se ha presentado una versión distribuida del algoritmo, que también se compara de forma bastante favorable contra las heurísticas centralizadas conocidas

Bio-inspired computation: where we stand and what's next

In recent years, the research community has witnessed an explosion of literature dealing with the adaptation of behavioral patterns and social phenomena observed in nature towards efficiently solving complex computational tasks. This trend has been especially dramatic in what relates to optimization problems, mainly due to the unprecedented complexity of problem instances, arising from a diverse spectrum of domains such as transportation, logistics, energy, climate, social networks, health and industry 4.0, among many others. Notwithstanding this upsurge of activity, research in this vibrant topic should be steered towards certain areas that, despite their eventual value and impact on the field of bio-inspired computation, still remain insufficiently explored to date. The main purpose of this paper is to outline the state of the art and to identify open challenges concerning the most relevant areas within bio-inspired optimization. An analysis and discussion are also carried out over the general trajectory followed in recent years by the community working in this field, thereby highlighting the need for reaching a consensus and joining forces towards achieving valuable insights into the understanding of this family of optimization techniques

Bio-inspired computation: where we stand and what's next

In recent years, the research community has witnessed an explosion of literature dealing with the adaptation of behavioral patterns and social phenomena observed in nature towards efficiently solving complex computational tasks. This trend has been especially dramatic in what relates to optimization problems, mainly due to the unprecedented complexity of problem instances, arising from a diverse spectrum of domains such as transportation, logistics, energy, climate, social networks, health and industry 4.0, among many others. Notwithstanding this upsurge of activity, research in this vibrant topic should be steered towards certain areas that, despite their eventual value and impact on the field of bio-inspired computation, still remain insufficiently explored to date. The main purpose of this paper is to outline the state of the art and to identify open challenges concerning the most relevant areas within bio-inspired optimization. An analysis and discussion are also carried out over the general trajectory followed in recent years by the community working in this field, thereby highlighting the need for reaching a consensus and joining forces towards achieving valuable insights into the understanding of this family of optimization techniques

Evolutionary Computation

This book presents several recent advances on Evolutionary Computation, specially evolution-based optimization methods and hybrid algorithms for several applications, from optimization and learning to pattern recognition and bioinformatics. This book also presents new algorithms based on several analogies and metafores, where one of them is based on philosophy, specifically on the philosophy of praxis and dialectics. In this book it is also presented interesting applications on bioinformatics, specially the use of particle swarms to discover gene expression patterns in DNA microarrays. Therefore, this book features representative work on the field of evolutionary computation and applied sciences. The intended audience is graduate, undergraduate, researchers, and anyone who wishes to become familiar with the latest research work on this field

Particle Swarm Optimization

Particle swarm optimization (PSO) is a population based stochastic optimization technique influenced by the social behavior of bird flocking or fish schooling.PSO shares many similarities with evolutionary computation techniques such as Genetic Algorithms (GA). The system is initialized with a population of random solutions and searches for optima by updating generations. However, unlike GA, PSO has no evolution operators such as crossover and mutation. In PSO, the potential solutions, called particles, fly through the problem space by following the current optimum particles. This book represents the contributions of the top researchers in this field and will serve as a valuable tool for professionals in this interdisciplinary field

Metaheuristic Optimization Frameworks: a Survey and Benchmarking

This paper performs an unprecedented comparative study of Metaheuristic optimization frameworks. As criteria for comparison a set of 271 features grouped in 30 characteristics and 6 areas has been selected. These features include the different metaheuristic techniques covered, mechanisms for solution encoding, constraint handling, neighborhood specification, hybridization, parallel and distributed computation, software engineering best practices, documentation and user interface, etc. A metric has been defined for each feature so that the scores obtained by a framework are averaged within each group of features, leading to a final average score for each framework. Out of 33 frameworks ten have been selected from the literature using well-defined filtering criteria, and the results of the comparison are analyzed with the aim of identifying improvement areas and gaps in specific frameworks and the whole set. Generally speaking, a significant lack of support has been found for hyper-heuristics, and parallel and distributed computing capabilities. It is also desirable to have a wider implementation of some Software Engineering best practices. Finally, a wider support for some metaheuristics and hybridization capabilities is needed