Redundancy of the genetic code enables translational pausing

Abstract The codon redundancy (degeneracy) found in protein-coding regions of mRNA also prescribes Translational Pausing (TP). When coupled with the appropriate interpreters, multiple meanings and functions are programmed into the same sequence of configurable switch-settings. This additional layer of Ontological Prescriptive Information (PIo) purposely slows or speeds up the translation-decoding process within the ribosome. Variable translation rates help prescribe functional folding of the nascent protein. Redundancy of the codon to amino acid mapping, therefore, is anything but superfluous or degenerate. Redundancy programming allows for simultaneous dual prescriptions of TP and amino acid assignments without cross-talk. This allows both functions to be coincident and realizable. We will demonstrate that the TP schema is a bona fide rule-based code, conforming to logical code-like properties. Second, we will demonstrate that this TP code is programmed into the supposedly degenerate redundancy of the codon table. We will show that algorithmic processes play a dominant role in the realization of this multi-dimensional code. <br/

Ubistatins Inhibit Proteasome-Dependent Degradation by Binding the Ubiquitin Chain

To identify previously unknown small molecules that inhibit cell cycle machinery, we performed a chemical genetic screen in Xenopus extracts. One class of inhibitors, termed ubistatins, blocked cell cycle progression by inhibiting cyclin B proteolysis and inhibited degradation of ubiquitinated Sic1 by purified proteasomes. Ubistatins blocked the binding of ubiquitinated substrates to the proteasome by targeting the ubiquitin-ubiquitin interface of Lys^(48)-linked chains. The same interface is recognized by ubiquitin-chain receptors of the proteasome, indicating that ubistatins act by disrupting a critical protein-protein interaction in the ubiquitin-proteasome system

The Sloan Lens ACS Survey. VII. Elliptical Galaxy Scaling Laws from Direct Observational Mass Measurements

We use a sample of 53 massive early-type strong gravitational lens galaxies with well-measured redshifts (ranging from z=0.06 to 0.36) and stellar velocity dispersions (between 175 and 400 km/s) from the Sloan Lens ACS (SLACS) Survey to derive numerous empirical scaling relations. The ratio between central stellar velocity dispersion and isothermal lens-model velocity dispersion is nearly unity within errors. The SLACS lenses define a fundamental plane (FP) that is consistent with the FP of the general population of early-type galaxies. We measure the relationship between strong-lensing mass M_lens within one-half effective radius (R_e/2) and the dimensional mass variable M_dim = G^-1 sigma_e2^2 R_e/2 to be log_10 [M_lens/10^11 M_Sun] = (1.03 +/- 0.04) log_10 [M_dim/10^11 M_Sun] + (0.54 +/- 0.02) (where sigma_e2 is the projected stellar velocity dispersion within R_e/2). The near-unity slope indicates that the mass-dynamical structure of massive elliptical galaxies is independent of mass, and that the "tilt" of the SLACS FP is due entirely to variation in total (luminous plus dark) mass-to-light ratio with mass. Our results imply that dynamical masses serve as a good proxies for true masses in massive elliptical galaxies. Regarding the SLACS lenses as a homologous population, we find that the average enclosed 2D mass profile goes as log_10 [M(<R)/M_dim] = (1.10 +/- 0.09) log_10 [R/R_e] + (0.85 +/- 0.03), consistent with an isothermal (flat rotation curve) model when de-projected into 3D. This measurement is inconsistent with the slope of the average projected aperture luminosity profile at a confidence level greater than 99.9%, implying a minimum dark-matter fraction of f_DM = 0.38 +/- 0.07 within one effective radius. (abridged)Comment: 13 pages emulateapj; accepted for publication in the Ap

The Relation Between Galaxy Morphology and Environment in the Local Universe: An RC3-SDSS Picture

We present an analysis of the z ~ 0 morphology-environment relation for 911 bright (M_B < -19) galaxies, matching classical RC3 morphologies to the SDSS-based group catalog of Yang et al. We study how the relative fractions of spirals, lenticulars, and ellipticals depend on halo mass over a range of 10^11.7-10^14.8 h^-1 Msol. We pay particular attention to how morphology relates to central (most massive) vs satellite galaxy status. The fraction of galaxies which are elliptical is a strong function of stellar mass; it is also a strong function of halo mass, but only for central galaxies. We interpret this in a scenario where elliptical galaxies are formed, probably via mergers, as central galaxies within their halos; satellite ellipticals are previously central galaxies accreted onto larger halos. The overall fraction of S0 galaxies increases strongly with halo mass, from ~10% to ~70%. We find striking differences between the central and satellites: 20+/-2% of central M_* > 10^10.5 Msol galaxies are S0 regardless of halo mass, but satellite S0 galaxies are only found in massive (> 10^13 h^-1 Msol) halos, where they are 69+/-4% of the M_* > 10^10.5 Msol satellite population. This suggests two channels for S0 formation: one for central galaxies, and another which transforms lower mass (M_* <~ 10^11 Msol) accreted spirals into satellite S0 galaxies in massive halos. Analysis of finer morphological structure (bars and rings in disk galaxies) shows some trends with stellar mass, but none with halo mass; this is consistent with other recent studies which indicate that bars are not strongly influenced by galaxy environment. Radio sources in high-mass central galaxies are common, similarly so for elliptical and S0 galaxies, with a frequency that increases with halo mass. Emission-line AGN (mostly LINERs) are more common in S0s, but show no strong environmental trends (abridged).Comment: Accepted for publication in the Astrophysical Journal (ApJ

The Peculiar Motions of Early-Type Galaxies in Two Distant Regions. IV. The Photometric Fitting Procedure

The EFAR project is a study of 736 candidate early-type galaxies in 84 clusters lying in two regions towards Hercules-Corona Borealis and Perseus-Cetus at distances $cz \approx 6000-15000$ km/s. In this paper we describe a new method of galaxy photometry adopted to derive the photometric parameters of the EFAR galaxies. The algorithm fits the circularized surface brightness profiles as the sum of two seeing-convolved components, an $R^{1/4}$ and an exponential law. This approach allows us to fit the large variety of luminosity profiles displayed by the EFAR galaxies homogeneously and to derive (for at least a subset of these) bulge and disk parameters. Multiple exposures of the same objects are optimally combined and an optional sky-fitting procedure has been developed to correct for sky subtraction errors. Extensive Monte Carlo simulations are analyzed to test the performance of the algorithm and estimate the size of random and {\it systematic} errors. Random errors are small, provided that the global signal-to-noise ratio of the fitted profiles is larger than $\approx 300$. Systematic errors can result from 1) errors in the sky subtraction, 2) the limited radial extent of the fitted profiles, 3) the lack of resolution due to seeing convolution and pixel sampling, 4) the use of circularized profiles for very flattened objects seen edge-on and 5) a poor match of the fitting functions to the object profiles. Large systematic errors are generated by the widely used simple $R^{1/4}$ law to fit luminosity profiles when a disk component, as small as 20% of the total light, is present.Comment: 47 pages, Latex File, aaspp4.sty, flushrt.sty, 16 Postscript figures, to appear in ApJ

Search for chargino-neutralino production with mass splittings near the electroweak scale in three-lepton final states in √s=13 TeV pp collisions with the ATLAS detector

A search for supersymmetry through the pair production of electroweakinos with mass splittings near the electroweak scale and decaying via on-shell W and Z bosons is presented for a three-lepton final state. The analyzed proton-proton collision data taken at a center-of-mass energy of √s=13  TeV were collected between 2015 and 2018 by the ATLAS experiment at the Large Hadron Collider, corresponding to an integrated luminosity of 139  fb−1. A search, emulating the recursive jigsaw reconstruction technique with easily reproducible laboratory-frame variables, is performed. The two excesses observed in the 2015–2016 data recursive jigsaw analysis in the low-mass three-lepton phase space are reproduced. Results with the full data set are in agreement with the Standard Model expectations. They are interpreted to set exclusion limits at the 95% confidence level on simplified models of chargino-neutralino pair production for masses up to 345 GeV

Precise measurement of the W-boson mass with the CDF II detector

We have measured the W-boson mass MW using data corresponding to 2.2/fb of integrated luminosity collected in proton-antiproton collisions at 1.96 TeV with the CDF II detector at the Fermilab Tevatron collider. Samples consisting of 470126 W->enu candidates and 624708 W->munu candidates yield the measurement MW = 80387 +- 12 (stat) +- 15 (syst) = 80387 +- 19 MeV. This is the most precise measurement of the W-boson mass to date and significantly exceeds the precision of all previous measurements combined

Measurement of the cross-section of high transverse momentum vector bosons reconstructed as single jets and studies of jet substructure in pp collisions at √s = 7 TeV with the ATLAS detector

This paper presents a measurement of the cross-section for high transverse momentum W and Z bosons produced in pp collisions and decaying to all-hadronic final states. The data used in the analysis were recorded by the ATLAS detector at the CERN Large Hadron Collider at a centre-of-mass energy of √s = 7 TeV;{\rm Te}{\rm V}$and correspond to an integrated luminosity of$4.6\;{\rm f}{{{\rm b}}^{-1}}$. The measurement is performed by reconstructing the boosted W or Z bosons in single jets. The reconstructed jet mass is used to identify the W and Z bosons, and a jet substructure method based on energy cluster information in the jet centre-of-mass frame is used to suppress the large multi-jet background. The cross-section for events with a hadronically decaying W or Z boson, with transverse momentum${{p}_{{\rm T}}}\gt 320\;{\rm Ge}{\rm V}$and pseudorapidity$|\eta |\lt 1.9$, is measured to be${{\sigma }_{W+Z}}=8.5\pm 1.7$ pb and is compared to next-to-leading-order calculations. The selected events are further used to study jet grooming techniques

Search for pair-produced long-lived neutral particles decaying to jets in the ATLAS hadronic calorimeter in ppcollisions at √s=8TeV

The ATLAS detector at the Large Hadron Collider at CERN is used to search for the decay of a scalar boson to a pair of long-lived particles, neutral under the Standard Model gauge group, in 20.3fb−1of data collected in proton–proton collisions at √s=8TeV. This search is sensitive to long-lived particles that decay to Standard Model particles producing jets at the outer edge of the ATLAS electromagnetic calorimeter or inside the hadronic calorimeter. No significant excess of events is observed. Limits are reported on the product of the scalar boson production cross section times branching ratio into long-lived neutral particles as a function of the proper lifetime of the particles. Limits are reported for boson masses from 100 GeVto 900 GeV, and a long-lived neutral particle mass from 10 GeVto 150 GeV

Search for direct pair production of the top squark in all-hadronic final states in proton-proton collisions at s√=8 TeV with the ATLAS detector

The results of a search for direct pair production of the scalar partner to the top quark using an integrated luminosity of 20.1fb−1 of proton–proton collision data at √s = 8 TeV recorded with the ATLAS detector at the LHC are reported. The top squark is assumed to decay via t˜→tχ˜01 or t˜→ bχ˜±1 →bW(∗)χ˜01 , where χ˜01 (χ˜±1 ) denotes the lightest neutralino (chargino) in supersymmetric models. The search targets a fully-hadronic final state in events with four or more jets and large missing transverse momentum. No significant excess over the Standard Model background prediction is observed, and exclusion limits are reported in terms of the top squark and neutralino masses and as a function of the branching fraction of t˜ → tχ˜01 . For a branching fraction of 100%, top squark masses in the range 270–645 GeV are excluded for χ˜01 masses below 30 GeV. For a branching fraction of 50% to either t˜ → tχ˜01 or t˜ → bχ˜±1 , and assuming the χ˜±1 mass to be twice the χ˜01 mass, top squark masses in the range 250–550 GeV are excluded for χ˜01 masses below 60 GeV