Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe

Evaluation of C-Band SAR for Identification of Flooded Vegetation in Emergency Response Products

A synthetic aperture radar (SAR) data set of the Peace Athabasca Delta, Alberta, was used to evaluate approaches to flooded vegetation mapping. A primary objective was to identify how to add a flooded vegetation layer to the Emergency Geomatics Service (EGS) SAR-derived flood products. Field data were used to identify non-flooded and flooded vegetation. A combination of statistical analyses and box plot visual inspection was used to evaluate the magnitude-only images, the polarimetric and compact polarimetric parameters/decompositions, and the coherence products for mapping flooded vegetation. This paper provides some background on the use of SAR for flood mapping, describes the data and processing methods, and presents the results of this comparison. To some degree all polarizations and techniques were effective for mapping flooded vegetation due to the increased backscatter intensity and the phase shift from the double bounce scattering. In particular, all polarization combinations, the HH/HV ratio, Shannon entropy, and the m-chi double bounce produce good separation. The water/vegetation interface remains coherent when flooded, also allowing flooded vegetation to be identified with seasonal coherence. These results demonstrate that the use of multi-mode RADARSAT Constellation Mission data for providing a flooded vegetation layer to EGS flood maps is possible

Ten new insights in climate science 2021: A horizon scan

Non-technical summary We summarize some of the past year's most important findings within climate change-related research. New research has improved our understanding about the remaining options to achieve the Paris Agreement goals, through overcoming political barriers to carbon pricing, taking into account non-CO2 factors, a well-designed implementation of demand-side and nature-based solutions, resilience building of ecosystems and the recognition that climate change mitigation costs can be justified by benefits to the health of humans and nature alone. We consider new insights about what to expect if we fail to include a new dimension of fire extremes and the prospect of cascading climate tipping elements. Technical summary A synthesis is made of 10 topics within climate research, where there have been significant advances since January 2020. The insights are based on input from an international open call with broad disciplinary scope. Findings include: (1) the options to still keep global warming below 1.5 °C; (2) the impact of non-CO2 factors in global warming; (3) a new dimension of fire extremes forced by climate change; (4) the increasing pressure on interconnected climate tipping elements; (5) the dimensions of climate justice; (6) political challenges impeding the effectiveness of carbon pricing; (7) demand-side solutions as vehicles of climate mitigation; (8) the potentials and caveats of nature-based solutions; (9) how building resilience of marine ecosystems is possible; and (10) that the costs of climate change mitigation policies can be more than justified by the benefits to the health of humans and nature. Social media summary How do we limit global warming to 1.5 °C and why is it crucial? See highlights of latest climate science. </jats:sec