25 research outputs found
Long-term decline of the Amazon carbon sink
Atmospheric carbon dioxide records indicate that the land surface has acted as a strong global carbon sink over recent decades1, 2, with a substantial fraction of this sink probably located in the tropics3, particularly in the Amazon4. Nevertheless, it is unclear how the terrestrial carbon sink will evolve as climate and atmospheric composition continue to change. Here we analyse the historical evolution of the biomass dynamics of the Amazon rainforest over three decades using a distributed network of 321 plots. While this analysis confirms that Amazon forests have acted as a long-term net biomass sink, we find a long-term decreasing trend of carbon accumulation. Rates of net increase in above-ground biomass declined by one-third during the past decade compared to the 1990s. This is a consequence of growth rate increases levelling off recently, while biomass mortality persistently increased throughout, leading to a shortening of carbon residence times. Potential drivers for the mortality increase include greater climate variability, and feedbacks of faster growth on mortality, resulting in shortened tree longevity5. The observed decline of the Amazon sink diverges markedly from the recent increase in terrestrial carbon uptake at the global scale1, 2, and is contrary to expectations based on models6
Gaia Data Release 2 Mapping the Milky Way disc kinematics
Context. The second Gaia data release (Gaia DR2) contains high-precision positions, parallaxes, and proper motions for 1.3 billion sources as well as line-of-sight velocities for 7.2 million stars brighter than G(RVS) = 12 mag. Both samples provide a full sky coverage. Aims. To illustrate the potential of Gaia DR2, we provide a first look at the kinematics of the Milky Way disc, within a radius of several kiloparsecs around the Sun. Methods. We benefit for the first time from a sample of 6.4 million F-G-K stars with full 6D phase-space coordinates, precise parallaxes (sigma((omega) over bar)/(omega) over bar Results. Gaia DR2 allows us to draw 3D maps of the Galactocentric median velocities and velocity dispersions with unprecedented accuracy, precision, and spatial resolution. The maps show the complexity and richness of the velocity field of the galactic disc. We observe streaming motions in all the components of the velocities as well as patterns in the velocity dispersions. For example, we confirm the previously reported negative and positive galactocentric radial velocity gradients in the inner and outer disc, respectively. Here, we see them as part of a non-axisymmetric kinematic oscillation, and we map its azimuthal and vertical behaviour. We also witness a new global arrangement of stars in the velocity plane of the solar neighbourhood and in distant regions in which stars are organised in thin substructures with the shape of circular arches that are oriented approximately along the horizontal direction in the U - V plane. Moreover, in distant regions, we see variations in the velocity substructures more clearly than ever before, in particular, variations in the velocity of the Hercules stream. Conclusions. Gaia DR2 provides the largest existing full 6D phase-space coordinates catalogue. It also vastly increases the number of available distances and transverse velocities with respect to Gaia DR1. Gaia DR2 offers a great wealth of information on the Milky Way and reveals clear non-axisymmetric kinematic signatures within the Galactic disc, for instance. It is now up to the astronomical community to explore its full potential.Peer reviewe
Gaia Data Release 2 Observations of solar system objects
CONTEXT: The Gaia spacecraft of the European Space Agency (ESA) has been securing observations of solar system objects (SSOs)
since the beginning of its operations. Data Release 2 (DR2) contains the observations of a selected sample of 14,099 SSOs. These
asteroids have been already identified and have been numbered by the Minor Planet Center repository. Positions are provided for each
Gaia observation at CCD level. As additional information, complementary to astrometry, the apparent brightness of SSOs in the unfiltered
G band is also provided for selected observations.
AIMS: We explain the processing of SSO data, and describe the criteria we used to select the sample published in Gaia DR2. We then
explore the data set to assess its quality.
METHODS: To exploit the main data product for the solar system in Gaia DR2, which is the epoch astrometry of asteroids, it is necessary
to take into account the unusual properties of the uncertainty, as the position information is nearly one-dimensional. When this aspect
is handled appropriately, an orbit fit can be obtained with post-fit residuals that are overall consistent with the a-priori error model that
was used to define individual values of the astrometric uncertainty. The role of both random and systematic errors is described. The
distribution of residuals allowed us to identify possible contaminants in the data set (such as stars). Photometry in the G band was
compared to computed values from reference asteroid shapes and to the flux registered at the corresponding epochs by the red and blue
photometers (RP and BP).
RESULTS: The overall astrometric performance is close to the expectations, with an optimal range of brightness G ⌠12 â 17. In this
range, the typical transit-level accuracy is well below 1 mas. For fainter asteroids, the growing photon noise deteriorates the performance.
Asteroids brighter than G ⌠12 are affected by a lower performance of the processing of their signals. The dramatic improvement
brought by Gaia DR2 astrometry of SSOs is demonstrated by comparisons to the archive data and by preliminary tests on the detection
of subtle non-gravitational effects
Gaia Data Release 2: The celestial reference frame (Gaia-CRF2)
Context. The second release of Gaia data (Gaia DR2) contains the astrometric parameters for more than half a million quasars which define akinematically non-rotating reference frame in the optical domain. A subset of them have accurate VLBI positions which allow the axes of thereference frame to be aligned with the ICRF radio frame. Aims. We aim to describe the astrometric and photometric properties of the quasars selected to represent Gaia-CRF2, the celestial reference frame of Gaia DR2, and to compare the optical and radio positions for sources with accurate VLBI positions. Methods. Descriptive statistics are used to characterise the overall properties of the quasar sample. Residual rotation and orientation errors and large-scale systematics are quantified by means of expansions in vector spherical harmonics. Positional differences are calculated relative to a prototype version of the forthcoming ICRF3. Results. Gaia-CRF2 is materialised by the positions of a sample of 556 869 sources in Gaia DR2, obtained from a positional cross-match with the ICRF3-prototype and AllWISE AGN catalogues. The sample constitutes a clean, dense, and homogeneous set of extragalactic point sources in the magnitude range G ' 16 to 21 mag with accurately known optical positions. The median positional uncertainty is 0.12 mas for G < 18 mag and 0.5 mas at G = 20 mag. Large-scale systematics are estimated to be in the range 20 to 30 ÎŒas. The accuracy claims are supported by the parallaxes and proper motions of the quasars in Gaia DR2. The optical positions for a subset of 2820 sources in common with the ICRF3-prototype show very good overall agreement with the radio positions, but several tens of sources have significantly discrepant positions. Conclusions. Based on less than 40% of the data expected from the nominal Gaia mission, Gaia-CRF2 is the first realisation of a non-rotating global optical reference frame meeting the ICRS prescriptions, i.e. built only on extragalactic sources. In accuracy it matches the current radio frame realised in the ICRF but with a much higher density of sources in all parts of the sky except along the Galactic equator
High-density linkage mapping and distribution of segregation distortion regions in the oak genome
We developed the densest single-nucleotide polymorphism (SNP)-based linkage genetic map to date for the genusQuercus An 8k gene-based SNP array was used to genotype more than 1,000 full-sibs from two intraspecific and two interspecific full-sib families ofQuercus petraeaandQuercus robur A high degree of collinearity was observed between the eight parental maps of the two species. A composite map was then established with 4,261 SNP markers spanning 742 cM over the 12 linkage groups (LGs) of the oak genome. Nine genomic regions from six LGs displayed highly significant distortions of segregation. Two main hypotheses concerning the mechanisms underlying segregation distortion are discussed: genetic load vs. reproductive barriers. Our findings suggest a predominance of pre-zygotic to post-zygotic barriers
Genetics and genomics of tree architecture
Chapitre 5International audienceEven though the repetitive and decentralized nature of plant organogenesis confers a large plasticity to plants, their architecture is highly organized throughout ontogeny and at different scales. Growth, branching and flowering constitute the main processes leading to plant architectures and are key determinants of plant productivity, whatever the target product (biomass, flowers, seeds or fruits). Their genetic and genomic study is thus of great interest for breeding purpose. However, progresses have been limited by many constraints resulting from the large size and long-live of trees and therefore the difficult to assess phenotypes on large numbers of individuals for exploring both the genetic effect or genetic by environment interaction. Despite these limitations, significant advances have been recently obtained in quantitative genetics studies performed on architectural traits in forest and fruit trees, and on the physiological and molecular comprehension of mechanisms underlying plant architectural edification. Moreover, tools and methods for describing plant architectures and for exploring genetic and molecular controls have been improved, leading to new perspectives in terms of high-throughput genotyping, phenotyping and genomic studies. In this chapter, we review the genetic, physiological and molecular analyses that have been performed in the last years on tree architecture, with a particular focus on advances realized on tree crops
Gaia Data Release 2 Kinematics of globular clusters and dwarf galaxies around the Milky Way
This article has an erratum: Doi 10.1051/0004-6361/201832698 This article has an erratum: Doi 10.1051/0004-6361/202039217Aims. The goal of this paper is to demonstrate the outstanding quality of the second data release of the Gaia mission and its power for constraining many different aspects of the dynamics of the satellites of the Milky Way. We focus here on determining the proper motions of 75 Galactic globular clusters, nine dwarf spheroidal galaxies, one ultra-faint system, and the Large and Small Magellanic Clouds. Methods. Using data extracted from the Gaia archive, we derived the proper motions and parallaxes for these systems, as well as their uncertainties. We demonstrate that the errors, statistical and systematic, are relatively well understood. We integrated the orbits of these objects in three different Galactic potentials, and characterised their properties. We present the derived proper motions, space velocities, and characteristic orbital parameters in various tables to facilitate their use by the astronomical community. Results. Our limited and straightforward analyses have allowed us for example to (i) determine absolute and very precise proper motions for globular clusters; (ii) detect clear rotation signatures in the proper motions of at least five globular clusters; (iii) show that the satellites of the Milky Way are all on high-inclination orbits, but that they do not share a single plane of motion; (i v) derive a lower limit for the mass of the Milky Way of 9.1(-2.6)(+6.2) x 10(11) M-circle dot based on the assumption that the Leo I dwarf spheroidal is bound; (v) derive a rotation curve for the Large Magellanic Cloud based solely on proper motions that is competitive with line-of-sight velocity curves, now using many orders of magnitude more sources; and (v i) unveil the dynamical effect of the bar on the motions of stars in the Large Magellanic Cloud. Conclusions. All these results highlight the incredible power of the Gaia astrometric mission, and in particular of its second data release.Peer reviewe
Effect of Hidden Relatedness on Single-Step Genetic Evaluation in an Advanced Open-Pollinated Breeding Program
Genomic prediction in contrast to a genome-wide association study in explaining heritable variation of complex growth traits in breeding populations of Eucalyptus.
Background: The advent of high-throughput genotyping technologies coupled to genomic prediction methods established a new paradigm to integrate genomics and breeding. We carried out whole-genome prediction and contrasted it to a genome-wide association study (GWAS) for growth traits in breeding populations of Eucalyptus benthamii (n =505) and Eucalyptus pellita (n =732). Both species are of increasing commercial interest for the development of germplasm adapted to environmental stresses. Results: Predictive ability reached 0.16 in E. benthamii and 0.44 in E. pellita for diameter growth. Predictive abilities using either Genomic BLUP or different Bayesian methods were similar, suggesting that growth adequately fits the infinitesimal model. Genomic prediction models using ~5000?10,000 SNPs provided predictive abilities equivalent to using all 13,787 and 19,506 SNPs genotyped in the E. benthamii and E. pellita populations, respectively. No difference was detected in predictive ability when different sets of SNPs were utilized, based on position (equidistantly genome-wide, inside genes, linkage disequilibrium pruned or on single chromosomes), as long as the total number of SNPs used was above ~5000. Predictive abilities obtained by removing relatedness between training and validation sets fell near zero for E. benthamii and were halved for E. pellita. These results corroborate the current view that relatedness is the main driver of genomic prediction, although some short-range historical linkage disequilibrium (LD) was likely captured for E. pellita. A GWAS identified only one significant association for volume growth in E. pellita, illustrating the fact that while genome-wide regression is able to account for large proportions of the heritability, very little or none of it is captured into significant associations using GWAS in breeding populations of the size evaluated in this study. Conclusions: This study provides further experimental data supporting positive prospects of using genome-wide data to capture large proportions of trait heritability and predict growth traits in trees with accuracies equal or better than those attainable by phenotypic selection. Additionally, our results document the superiority of the whole-genome regression approach in accounting for large proportions of the heritability of complex traits such as growth in contrast to the limited value of the local GWAS approach toward breeding applications in forest trees.Made available in DSpace on 2018-08-08T00:50:51Z (GMT). No. of bitstreams: 1
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