13 research outputs found

    Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)

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    Scenarios for UK Food and Nutrition Security in the Wake of the COVID-19 Pandemic

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    This report is an output from The UK Food and Nutrition Security During and After the COVID‐19 pandemic (C‐19 FNS) project, funded by the Economic and Social Research Council (ES/V004433/1) under the UK Research and Innovation Open Call on COVID‐19.The study is led by Dr Mike Rivington from The James Hutton Institute, and operates in full collaboration with Chatham House (the Royal Institute of International Affairs) and Cranfield University. This scenario planning component is led by Dr Dominic Duckett, also from The James Hutton Institute

    Implementing post-normal science with or for EU policy actors : using quantitative story-telling

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    Unidad de excelencia María de Maeztu CEX2019-000940-MThere is increasing recognition of the wicked nature of the intertwined climate, biodiversity and economic crises, and the need for adaptive, multi-scale approaches to understanding the complexity of both the problems and potential responses. Most science underpinning policy responses to sustainability issues, however, remains overtly apolitical and focussed on technical innovation; at odds with a critical body of literatures insisting on the recognition of systemic problem framing when supporting policy processes. This paper documents the experience of implementing a mixed method approach called quantitative story-telling (QST) to policy analysis that explicitly recognises this normative dimension, as the methodology is part of a post-normal science (PNS) toolkit. The authors reflect on what was learnt when considering how QST fared as a tool for science-policy interaction, working with European Union (EU) level policy actors interested in sustainable agriculture and sustainable development goal 2. These goals-also known as UN Agenda 2030-are the latest institutionalisation of the pursuit of sustainable development and the EU has positioned itself as taking a lead in its implementation. Thus, the paper illustrates our experience of using PNS as an approach to science policy interfaces in a strategic policy context; and illustrates how the challenges identified in the science-policy literature are amplified when working across multiple policy domains and taking a complex systems approach. Our discussion on lessons learnt may be of interest to researchers seeking to work with policy-makers on complex sustainability issues

    Using deliberative societal metabolism analysis to analyse CAP’s delivery of EU sustainability and climate change objectives.

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    This paper contributes to the conference discussions of (1) “what are the trade-offs and synergies between the economic, environmental and social dimensions of the Common Agricultural Policy (CAP) as a policy geared towards sustainability”; and (2) how to measure the performance of agriculture at a range of scales. Specifically, we assess whether there are tensions for CAP policy between enhancing productivity and the provision of public goods. Our insights are derived from an EU Horizon 2020 project, Moving Towards Adaptive Governance in Complexity: Informing Nexus Security (MAGIC) exploring the robustness of policy narratives in the water, energy, food and environment nexus. As highlighted in the conference objectives, assessing the role of the CAP in delivering sustainability requires taking multiple, non-equivalent perspectives (e.g. geographical scales or structural hierarchies). The conduct of these multi-perspective studies is guided by the concepts of societal metabolism analysis. The analytical focus is thus on understanding the mix of biophysical and socio-economic resources needed to maintain social-ecological systems (e.g. food and farming systems) and the degree to which these are met locally, highlighting where there may be dependencies on other systems or externalised impacts. We conducted transdisciplinary research with policy makers using Quantitative Story Telling (QST). The QST process has a phase of qualitative analysis of the institutional and semantic framings of CAP policy narratives, followed by formal quantification of the robustness of policy narratives using the MuSIASEM toolkit for societal metabolism analysis. Interpretation of these formal analyses, with stakeholders in DG Agri and other EU institutions, closed the loop. The results of this analysis (and of other analyses for Biodiversity, Circular Economy, Energy Efficiency, and Water Framework Directive) are available via the MAGIC document repository. From the semantic qualitative phase, the narrative selected as the basis for formal analysis was: “CAP aims to ensure European agricultural competitiveness in the world market and aims to deliver public goods such as biodiversity conservation, water quality and climate change mitigation. These aims are in opposition”. The formal societal metabolism analysis was pan-EU, focusing on key aspects of EU farming systems. These characterized imports and exports of agricultural commodities, the relative intensities of inputs use in production systems and the aggregate impacts of production systems on environmental indicators. Farm Accountancy Data Network (FADN) data and Eurostat CAP impact metrics already include variables that can support these pan-EU societal metabolism analyses. Adding more bio-physical quantities to those existing within FADN, particularly for inputs and outputs, would enhance its analytical value, particularly for identifying externalisation and pressures on the environment

    Old Wine in New Bottles : Exploiting Data from the EU's Farm Accountancy Data Network for Pan-EU Sustainability Assessments of Agricultural Production Systems

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    Unidad de excelencia María de Maeztu CEX2019-000940-MThe paper presents insights from carrying out a pan-EU sustainability assessment using Farm Accountancy Data Network (FADN) data (the old wine) with societal metabolism accounting (SMA) processes (the new bottles). The SMA was deployed as part of a transdisciplinary study with EU policy stakeholders of how EU policy may need to change to deliver sustainability commitments, particularly to the UN Sustainable Development Goals. The paper outlines the concepts underlying SMA and its specific implementation using the FADN data. A key focus was on the interactions between crop and livestock systems and how this determines imported feedstuffs requirements, with environmental and other footprints beyond the EU. Examples of agricultural production systems performance are presented in terms of financial/efficiency, resource use (particularly the water footprint) and quantifies potential pressures on the environment. Benefits and limitations of the FADN dataset and the SMA outputs are discussed, highlighting the challenges of linking quantified pressures with environmental impacts. The paper concludes that the complexity of agriculture's interactions with economy and society means there is great need for conceptual frameworks, such as SMA, that can take multiple, non-equivalent, perspectives and that can be deployed with policy stakeholders despite generating uncomfortable knowledge

    Transforming knowledge systems for life on Earth: Visions of future systems and how to get there

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    © 2020 The Author(s) Formalised knowledge systems, including universities and research institutes, are important for contemporary societies. They are, however, also arguably failing humanity when their impact is measured against the level of progress being made in stimulating the societal changes needed to address challenges like climate change. In this research we used a novel futures-oriented and participatory approach that asked what future envisioned knowledge systems might need to look like and how we might get there. Findings suggest that envisioned future systems will need to be much more collaborative, open, diverse, egalitarian, and able to work with values and systemic issues. They will also need to go beyond producing knowledge about our world to generating wisdom about how to act within it. To get to envisioned systems we will need to rapidly scale methodological innovations, connect innovators, and creatively accelerate learning about working with intractable challenges. We will also need to create new funding schemes, a global knowledge commons, and challenge deeply held assumptions. To genuinely be a creative force in supporting longevity of human and non-human life on our planet, the shift in knowledge systems will probably need to be at the scale of the enlightenment and speed of the scientific and technological revolution accompanying the second World War. This will require bold and strategic action from governments, scientists, civic society and sustained transformational intent

    Outcomes after perioperative SARS-CoV-2 infection in patients with proximal femoral fractures: an international cohort study

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    Objectives Studies have demonstrated high rates of mortality in people with proximal femoral fracture and SARS-CoV-2, but there is limited published data on the factors that influence mortality for clinicians to make informed treatment decisions. This study aims to report the 30-day mortality associated with perioperative infection of patients undergoing surgery for proximal femoral fractures and to examine the factors that influence mortality in a multivariate analysis. Setting Prospective, international, multicentre, observational cohort study. Participants Patients undergoing any operation for a proximal femoral fracture from 1 February to 30 April 2020 and with perioperative SARS-CoV-2 infection (either 7 days prior or 30-day postoperative). Primary outcome 30-day mortality. Multivariate modelling was performed to identify factors associated with 30-day mortality. Results This study reports included 1063 patients from 174 hospitals in 19 countries. Overall 30-day mortality was 29.4% (313/1063). In an adjusted model, 30-day mortality was associated with male gender (OR 2.29, 95% CI 1.68 to 3.13, p80 years (OR 1.60, 95% CI 1.1 to 2.31, p=0.013), preoperative diagnosis of dementia (OR 1.57, 95% CI 1.15 to 2.16, p=0.005), kidney disease (OR 1.73, 95% CI 1.18 to 2.55, p=0.005) and congestive heart failure (OR 1.62, 95% CI 1.06 to 2.48, p=0.025). Mortality at 30 days was lower in patients with a preoperative diagnosis of SARS-CoV-2 (OR 0.6, 95% CI 0.6 (0.42 to 0.85), p=0.004). There was no difference in mortality in patients with an increase to delay in surgery (p=0.220) or type of anaesthetic given (p=0.787). Conclusions Patients undergoing surgery for a proximal femoral fracture with a perioperative infection of SARS-CoV-2 have a high rate of mortality. This study would support the need for providing these patients with individualised medical and anaesthetic care, including medical optimisation before theatre. Careful preoperative counselling is needed for those with a proximal femoral fracture and SARS-CoV-2, especially those in the highest risk groups. Trial registration number NCT0432364

    Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)

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    International audienceIn 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field
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