The characterisation of fossil bone

This research presents a multi-disciplinary approach to the analysis of ancient bones, in which many different chemical and physical analytical techniques were applied to a relatively small sample of human and animal bones from different depositional environments. The results of these analyses indicate that the principle mechanisms responsible for diagenetic alteration of buried bones are chemical hydrolysis of bone collagen and microscopic tunnelling by saprophytic micro-organisms. These mechanisms, either independently or together, result in an increase in the porosity of the bone at a microscopic scale from a value of approximately 20 percent in fresh bone up to as much as 65 percent in some archaeological bones. There is no evidence that the hydrolysis of collagen in buried bones directly affects the mineral component of bone, although the breaking of the intimate association between the collagen molecules and the bone apatite crystallites exposes the crystallites to potential dissolution and recrystallization by percolating ground water. Disruption of the collagen-apatite bond has been recognised in optical microscopy of thin sections by loss of the characteristic birefringence seen in unaltered bone when viewed in polarised light. The birefringence in histologically normal bone results from the strongly anisotropic orientation of the bone mineral crystallites imposed by their association with the highly organised collagen fibrils. Loss of birefringence as a result of diagenetic activity is attributed to a randomising of the orientation of crystallites after hydrolytic degradation of the collagen molecule. With progressive loss of collagen the relative calcium and phosphorus contents of fossil bones have been found to increase in proportions close to those of stoichiometrically correct hydroxyapatite. Microscopic and mineralogical studies have suggested that changes in the crystallinity of buried bones may be attributed to the presence of well-ordered crystals of hydroxyapatite in the pore structures of the bones and that these derive from dissolution and re-precipitation of the original bone apatite. However the elemental and isotopic composition of these re-precipitated apatites may not reflect that of the original bio mineral due to the incorporation of strontium, uranium fluoride etc. from the environment. Dissolution of bone mineral can, in most cases, be associated with the action of micro-organisms, many of which are known to favour low pHs and secrete organic acids as a by-product of their metabolism. Although micro-organisms isolated from buried bones produce collagen degrading enzymes (collagenases) these enzymes are too large to enter the spaces between the bone apatite crystallites and are therefore unable to attack the collagenous matrix of undegraded bone. Before micro-organisms can utilise bone collagen, the bone matrix must first be demineralized to expose the collagen fibrils or the collagen must be degraded by hydrolysis into shorter lengths that then escape via disrupted regions of the surrounding crystallites. Analysis of the strengths of modem and fossil bones has demonstrated a near logarithmic relationship between tensile strength and porosity. In addition, plots of strength vs porosity and strength vs nitrogen content are bimodal, indicating that two mechanisms are involved in the degradation of fossil bones. The microscopic and chemical analyses suggest that these mechanisms are chain scissioning of collagen and tunnelling by micro-organisms. Microscopic studies show that surface adsorption of 'humic acids' and metal ions are responsible for the colouration of fossil bones. Analysis of the total lipid extract of fossil bones contain cholesterol and cholesterol degradation products. Fossil cholesterol represents a potentially important and unique resource for palaeodietary studies. Conversely, this research has demonstrated that studies of ancient DNA are compounded by inhibition by compounds from the soil and contamination by modem DNA. Fossil bones in anoxic or wateriogged soils are readily colonised by sulphate-reducing bacteria and these bacteria are responsible for the deposition of iron sulphide in the form of pyrite framboids in pore spaces in the bone. On exposure to atmospheric oxygen, these pyrite framboids oxidise to sulphuric acid which in turn attacks bone apatite, resulting in the formation of vivianite (Fe(_3)(PO(_4))(_2).8H(_2)O) and gypsum (CaSO(_4).2H(_2)O). Crystallization and hydration of these minerals frequently disrupt the physical integrity of the bone specimens. Finally this research indicates potential regimes for the conservation of fossil bone specimens together with the archaeological or environmental evidence preserved within them

Dissociation of the diurnal variation of aldosterone and cortisol in anephric subjects

Dissociation of the diurnal variation of aldosterone and cortisol in anephric subjects. Diurnal variation of plasma aldosterone and cortisol concentration in man was studied in 13 anephric subjects and 7 normal subjects. All subjects were ambulatory and active throughout the study except during an 8-hour sleep period. Six anephric subjects received Kayexalate® (sodium polystyrene sulfonate) during the studies to prevent potassium accumulation and increase in plasma potassium concentration. Diurnal variation of plasma aldosterone concentration with peak and nadir concentrations at 12:00 noon and 12:00 midnight respectively was demonstrated in the studies on normal subjects. Changes in plasma aldosterone concentration were not significantly correlated with changes in plasma cortisol concentration but were highly correlated with changes in PRA (P < 0.001). There was a highly significant correlation between plasma aldosterone and potassium concentration in the anephric subjects studied without Kayexalate® administration (P < 0.001). In the anephric subjects who received Kayexalate®, plasma aldosterone and potassium concentration remained stable, and no correlation could be demonstrated. No diurnal variation of plasma aldosterone concentration could be demonstrated in either group of anephric subjects, whereas plasma cortisol concentration varied as in the studies on normal subjects. Conclusion. Diurnal variation of plasma aldosterone concentration is dependent on continued stimulation by the renin-angiotensin system. Loss of this stimulation has no demonstrable effect on the diurnal variation of plasma cortisol concentration.Dissociation des variations nycthémérales de l'aldostérone et du cortisol chez les sujets anéphriques. Les variations nycthémérales de l'aldostérone et du cortisol plasmatiques chez l'homme ont été étudiées chez 13 sujets anéphriques et 7 sujets normaux. Tous les sujets étaient ambulatoires excepté pendant une période de sommeil de 8 heures. Six sujets anéphriques receivaient du Kayexalate® (sodium polystyrene sulfonate) afin d'empêcher une accumulation de potassium et une augmentation de la kaliémie. Des variations nycthémérales de l'aldostéronémie avec un pic et un nadir à midi et minuit, respectivement, ont été observées chez les sujets normaux. Les modifications de l'aldostéronémie ne sont pas significativement corrélées avec les modifications du cortisol plasmatique mais très corrélées avec celles de PRA (P < 0,001). Il existe une corrélation très significative entre l'aldostéronémie et la kaliémie chez les sujets anéphriques étudiés en dehors de l'administration de Kayexalate (P < 0,001). Chez les sujets anéphriques recevant du Kayexalate l'aldostéronémie et la kaliémie sont stables et aucune corrélation n'est obtenue. Aucune variation nycthémérale de l'aldostéronémie n'a été observé dans les groupes de sujets anéphriques alors que la concentration de cortisol plasmatique varie comme chez les sujets normaux. Il peut être conclu de ces études que les variations nycthémérales de l'aldostéronémie dépendent de la stimulation par le système rénine-angiotensine. La perte de cette stimulation n'a pas d'effet sur la cortisolémie

Bone biodeterioration-The effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community.

Bacteria play an important role in the degradation of bone material. However, much remains to be learnt about the structure of their communities in degrading bone, and how the depositional environment influences their diversity throughout the exposure period. We genetically profiled the bacterial community in an experimental series of pig bone fragments (femur and humeri) deposited at different well-defined environments in Denmark. The bacterial community in the bone fragments and surrounding depositional environment were studied over one year, and correlated with the bioerosion damage patterns observed microscopically in the bones. We observed that the bacterial communities within the bones were heavily influenced by the local microbial community, and that the general bone microbial diversity increases with time after exposure. We found the presence of several known collagenase producing bacterial groups, and also observed increases in the relative abundance of several of these in bones with tunneling. We anticipate that future analyses using shotgun metagenomics on this and similar datasets will be able to provide insights into mechanisms of microbiome driven bone degradation

Antimicrobial resistance in commensal opportunistic pathogens isolated from non-sterile sites can be an effective proxy for surveillance in bloodstream infections

Antimicrobial resistance (AMR) surveillance in bloodstream infections (BSIs) is challenging in low/middle-income countries (LMICs) given limited laboratory capacity. Other specimens are easier to collect and process and are more likely to be culture-positive. In 8102 E. coli BSIs, 322,087 E. coli urinary tract infections, 6952 S. aureus BSIs and 112,074 S. aureus non-sterile site cultures from Oxfordshire (1998–2018), and other (55,296 isolates) rarer commensal opportunistic pathogens, antibiotic resistance trends over time in blood were strongly associated with those in other specimens (maximum cross-correlation per drug 0.51–0.99). Resistance prevalence was congruent across drug-years for each species (276/312 (88%) species-drug-years with prevalence within ± 10% between blood/other isolates). Results were similar across multiple countries in high/middle/low income-settings in the independent ATLAS dataset (103,559 isolates, 2004–2017) and three further LMIC hospitals/programmes (6154 isolates, 2008–2019). AMR in commensal opportunistic pathogens cultured from BSIs is strongly associated with AMR in commensal opportunistic pathogens cultured from non-sterile sites over calendar time, suggesting the latter could be used as an effective proxy for AMR surveillance in BSIs

A voice unknown: Undercurrents in Mussorgsky's 'Sunless'

Mussorgsky's Sunless cycle is aesthetically and stylistically an anomalous member of his oeuvre. Its notably effaced, pared-down, and withdrawn qualities present challenges to critical interpretation. Its uniqueness, however, renders it a crucial work for furnishing the fullest possible picture of Mussorgsky as a creative artist. The author of its texts, Golenishchev-Kutuzov (whose relationship with Mussorgsky at the time of its writing possibly extended beyond the platonic) has been identified by recent scholarship as an essential eye-witness for those to whom Stasov's populist characterization of the composer does not ring entirely true. Golenishchev-Kutuzov believed that in Sunless Mussorgsky first revealed his authentic artistic self. According to Golenishchev-Kutuvoz, Mussorgsky regarded his signal achievement in Sunless to have been the eradication of all elements other than feeling. In other words, he had thrown off the stylistic shackles imposed by the aesthetics of realism and relied entirely on intuitive harmonic invention as the sole conveyor of a purely subjective, affective meaning in the cycle. This hypothesis forms the point of departure for an investigation of select numbers of the cycle. Analysis reveals that the affective aspect is riot the only significant element operative. Alongside remnants of the realist style, there is evidence, of varying degrees of subtlety, for a knowing use of symmetrical pitch organization. Mussorgsky not only adapted the usual referential attachments of symmetrically based chromaticism-typically found in Russian operas of the second half of the nineteenth century-he also, through extremely simple but effective means, synthesized the intuitive harmonic and rational symmetrical elements of the cycle's pitch organization so that the latter emerges seamlessly out of the former. This remarkable synthesis ensures the cycle's uniformity of tone while also allowing for a reading that extends beyond the generally affective to the symbolically more specific. This symbolic level of reading offers several interpretative possibilities, one of which may refer even to the relationship of the poet and the composer. Irrespective of such potentials for interpretation, the most significant achievement in the cycle remains the synthesis of the intuitive/affective and rational/symbolic elements of its organization. Songs 1, 2, 3, and 6 of the cycle are considered in detail

The genetic history of Scandinavia from the Roman Iron Age to the present

The authors acknowledge support from the National Genomics Infrastructure in Stockholm funded by Science for Life Laboratory, the Knut and Alice Wallenberg Foundation and the Swedish Research Council, and SNIC/Uppsala Multidisciplinary Center for Advanced Computational Science for assistance with massively parallel sequencing and access to the UPPMAX computational infrastructure. We used resources from projects SNIC 2022/23-132, SNIC 2022/22-117, SNIC 2022/23-163, SNIC 2022/22-299, and SNIC 2021-2-17. This research was supported by the Swedish Research Council project ID 2019-00849_VR and ATLAS (Riksbankens Jubileumsfond). Part of the modern dataset was supported by a research grant from Science Foundation Ireland (SFI), grant number 16/RC/3948, and co-funded under the European Regional Development Fund and by FutureNeuro industry partners.Peer reviewedPublisher PD

Diagenesis of archaeological bone and tooth

An understanding of the structural complexity of mineralised tissues is fundamental for exploration into the field of diagenesis. Here we review aspects of current and past research on bone and tooth diagenesis using the most comprehensive collection of literature on diagenesis to date. Environmental factors such as soil pH, soil hydrology and ambient temperature, which influence the preservation of skeletal tissues are assessed, while the different diagenetic pathways such as microbial degradation, loss of organics, mineral changes, and DNA degradation are surveyed. Fluctuating water levels in and around the bone is the most harmful for preservation and lead to rapid skeletal destruction. Diagenetic mechanisms are found to work in conjunction with each other, altering the biogenic composition of skeletal material. This illustrates that researchers must examine multiple diagenetic pathways to fully understand the post-mortem interactions of archaeological skeletal material and the burial environment

Bringing analysis of gender and social–ecological resilience together in small-scale fisheries research: Challenges and opportunities

The demand for gender analysis is now increasingly orthodox in natural resource programming, including that for small-scale fisheries. Whilst the analysis of social–ecological resilience has made valuable contributions to integrating social dimensions into research and policy-making on natural resource management, it has so far demonstrated limited success in effectively integrating considerations of gender equity. This paper reviews the challenges in, and opportunities for, bringing a gender analysis together with social–ecological resilience analysis in the context of small-scale fisheries research in developing countries. We conclude that rather than searching for a single unifying framework for gender and resilience analysis, it will be more effective to pursue a plural solution in which closer engagement is fostered between analysis of gender and social-ecological resilience whilst preserving the strengths of each approach. This approach can make an important contribution to developing a better evidence base for small-scale fisheries management and policy

Measurement of the cross-section and charge asymmetry of WW bosons produced in proton-proton collisions at s=8\sqrt{s}=8 TeV with the ATLAS detector

This paper presents measurements of the $W^+ \rightarrow \mu^+\nu$ and $W^- \rightarrow \mu^-\nu$ cross-sections and the associated charge asymmetry as a function of the absolute pseudorapidity of the decay muon. The data were collected in proton--proton collisions at a centre-of-mass energy of 8 TeV with the ATLAS experiment at the LHC and correspond to a total integrated luminosity of 20.2~\mbox{fb^{-1}}. The precision of the cross-section measurements varies between 0.8% to 1.5% as a function of the pseudorapidity, excluding the 1.9% uncertainty on the integrated luminosity. The charge asymmetry is measured with an uncertainty between 0.002 and 0.003. The results are compared with predictions based on next-to-next-to-leading-order calculations with various parton distribution functions and have the sensitivity to discriminate between them.Comment: 38 pages in total, author list starting page 22, 5 figures, 4 tables, submitted to EPJC. All figures including auxiliary figures are available at https://atlas.web.cern.ch/Atlas/GROUPS/PHYSICS/PAPERS/STDM-2017-13

Search for new phenomena in final states with an energetic jet and large missing transverse momentum in pp collisions at √ s = 8 TeV with the ATLAS detector

Results of a search for new phenomena in final states with an energetic jet and large missing transverse momentum are reported. The search uses 20.3 fb−1 of √ s = 8 TeV data collected in 2012 with the ATLAS detector at the LHC. Events are required to have at least one jet with pT > 120 GeV and no leptons. Nine signal regions are considered with increasing missing transverse momentum requirements between Emiss T > 150 GeV and Emiss T > 700 GeV. Good agreement is observed between the number of events in data and Standard Model expectations. The results are translated into exclusion limits on models with either large extra spatial dimensions, pair production of weakly interacting dark matter candidates, or production of very light gravitinos in a gauge-mediated supersymmetric model. In addition, limits on the production of an invisibly decaying Higgs-like boson leading to similar topologies in the final state are presente