The position of graptolites within Lower Palaeozoic planktic ecosystems.

An integrated approach has been used to assess the palaeoecology of graptolites both as a discrete group and also as a part of the biota present within Ordovician and Silurian planktic realms. Study of the functional morphology of graptolites and comparisons with recent ecological analogues demonstrates that graptolites most probably filled a variety of niches as primary consumers, with modes of life related to the colony morphotype. Graptolite coloniality was extremely ordered, lacking any close morphological analogues in Recent faunas. To obtain maximum functional efficiency, graptolites would have needed varying degrees of coordinated automobility. A change in lifestyle related to ontogenetic changes was prevalent within many graptolite groups. Differing lifestyle was reflected by differing reproductive strategies, with synrhabdosomes most likely being a method for rapid asexual reproduction. Direct evidence in the form of graptolithophage 'coprolitic' bodies, as well as indirect evidence in the form of probable defensive adaptations, indicate that graptolites comprised a food item for a variety of predators. Graptolites were also hosts to a variety of parasitic organisms and provided an important nutrient source for scavenging organisms

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe

Understanding the great ordovician biodiversification event (GOBE): influences of paleogeography, paleoclimate, or paleoecology

"The Great Ordovician Biodiversification Event" (GOBE) was arguably the most important and sustained increase of marine biodiversity in Earth's history. During a short time span of 25 Ma, an "explosion" of diversity at the order, family, genus, and species level occurred. The combined effects of several geological and biological processes helped generate the GOBE. The peak of the GOBE correlates with unique paleogeography, featuring the greatest continental dispersal of the Paleozoic. Rapid sea-floor spreading during this time coincided with warm climates, high sea levels, and the largest tropical shelf area of the Phanerozoic. In addition, important ecological evolutionary changes took place, with the "explosion" of both zooplankton and suspension feeding organisms, possibly based on increased phytoplankton availability and high nutrient input to the oceans driven by intense volcanic activity. Extraterrestrial causes, in the form of asteroid impacts, have also been invoked to explain this remarkable event

Precisely locating the Ordovician equator in Laurentia

The Late Ordovician equatorial zone, like the zone today, had few hurricane-grade storms within 10º of the equator, as emphasized by the preservation of massive-bedded Thalassinoides ichnofacies in a trans-Laurentian belt more than 6000 km long, from the southwestern United States to North Greenland. That belt also includes nonamalgamated shell beds dominated by the brachiopod Proconchidium, which would not have been preserved after hurricane-grade storms. The belt lacks such storm-related sedimentary features as rip-up clasts, hummocky cross-stratification, or large channels. In contrast, other contemporaneous Laurentian Thalassinoides facies and shell beds on either side of the belt have been disturbed by severe storms below fair-weather wave base. The position of the biofacies-defined equatorial belt coincides with the Late Ordovician equator deduced from paleomagnetic data from Laurentia, thus providing both a high-precision equatorial location and an independent test of the geocentric axial dipole hypothesis for that time

Concluding IGCP 503: towards a holistic view of ordovician and silurian earth systems

IGCP 503 ‘Ordovician Palaeogeography and Palaeoclimate’ was established in 2004 primarily to identify the main drivers, both biological and geological, of the Great Ordovician Biodiversification Event. From the outset of the project it was clear that this event was part of a larger-scale, long-term, multifaceted process that included the end Ordovician extinction and Silurian recovery, if not more. IGCP 503 thus developed a major network that included scientists whose interests spanned the entire Lower Palaeozoic and encompassed a range of disciplines from classical palaeontology and palaeoecology through isotope geochemistry to climate modelling

Concluding IGCP 503: towards a holistic view of ordovician and silurian earth systems

IGCP 503 ‘Ordovician Palaeogeography and Palaeoclimate’ was established in 2004 primarily to identify the main drivers, both biological and geological, of the Great Ordovician Biodiversification Event. From the outset of the project it was clear that this event was part of a larger-scale, long-term, multifaceted process that included the end Ordovician extinction and Silurian recovery, if not more. IGCP 503 thus developed a major network that included scientists whose interests spanned the entire Lower Palaeozoic and encompassed a range of disciplines from classical palaeontology and palaeoecology through isotope geochemistry to climate modelling