The missense mutation in Abcg5 gene in spontaneously hypertensive rats (SHR) segregates with phytosterolemia but not hypertension

BACKGROUND: Sitosterolemia is a recessively inherited disorder in humans that is associated with premature atherosclerotic disease. Mutations in ABCG5 or ABCG8, comprising the sitosterolemia locus, STSL, are now known to cause this disease. Three in-bred strains of rats, WKY, SHR and SHRSP, are known to be sitosterolemic, hypertensive and they carry a missense 'mutation' in a conserved residue of Abcg5, Gly583Cys. Since these rat strains are also know to carry mutations at other genetic loci and the extent of phytosterolemia is only moderate, it is important to verify that the mutations in Abcg5 are causative for phytosterolemia and whether they contribute to hypertension. METHODS: To investigate whether the missense change in Abcg5 is responsible for the sitosterolemia we performed a segregation analysis in 103 F2 rats from a SHR × SD cross. Additionally, we measured tail-cuff blood pressure and measured intestinal lipid transport to identify possible mechanisms whereby this mutation causes sitosterolemia. RESULTS: Segregation analysis showed that the inheritance of the Gly583Cys mutation Abcg5 segregated with elevated plant sterols and this pattern was recessive, proving that this genetic change is responsible for the sitosterolemia in these rat strains. Tail-cuff monitoring of blood pressure in conscious animals showed no significant differences between wild-type, heterozygous and homozygous mutant F2 rats, suggesting that this alteration may not be a significant determinant of hypertension in these rats on a chow diet. CONCLUSION: This study shows that the previously identified Gly583Cys change in Abcg5 in three hypertension-susceptible rats is responsible for the sitosterolemia, but may not be a major determinant of blood pressure in these rats

Powdery Mildews Are Characterized by Contracted Carbohydrate Metabolism and Diverse Effectors to Adapt to Obligate Biotrophic Lifestyle

Powdery mildew is a widespread plant disease caused by obligate biotrophic fungal pathogens involving species-specific interactions between host and parasite. To gain genomic insights into the underlying obligate biotrophic mechanisms, we analyzed 15 microbial genomes covering powdery and downy mildews and rusts. We observed a genome-wide, massive contraction of multiple gene families in powdery mildews, such as enzymes in the carbohydrate metabolism pathway, when compared with ascomycete phytopathogens, while the fatty acid metabolism pathway maintained its integrity. We also observed significant differences in candidate secreted effector protein (CSEP) families between monocot and dicot powdery mildews, perhaps due to different selection forces. While CSEPs in monocot mildews are likely subject to positive selection causing rapid expansion, CSEP families in dicot mildews are shrinking under strong purifying selection. Our results not only illustrate obligate biotrophic mechanisms of powdery mildews driven by gene family evolution in nutrient metabolism, but also demonstrate how the divergence of CSEPs between monocot and dicot lineages might contribute to species-specific adaption

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe

The effect of tea plantation age on soil water-stable aggregates and aggregate-associated carbohydrate in southwestern China

Soil carbohydrates constitute an important component of soil organic matter (SOM), and substantially contribute to the stabilization of soil aggregates. Here, we aimed to investigate the distribution of water-stable aggregates and carbohydrates within water-stable aggregates of soil in tea plantations located in Zhongfeng Township of Mingshan County, Sichuan, which is in southwest China. Samples were collected from tea plantations of different ages (18, 25, 33, and 55 years old) and an area of abandoned land was used as a control(CK). We also examined correlations between soil carbohydrates fractions and aggregate stability. The results showed that the mean weight diameter (MWD) of soil aggregates in the tea plantations was significantly higher than that the control. Furthermore, the soil aggregate stability was significantly enhanced in tea plantations, with the 25-year-old plantation showing the most pronounced effect. Soils in the plantations were also characterized by higher concentrated acid-extracted carbohydrate content, and carbohydrate content in both surface and sub-surface layers were higher in the 25-year-old plantation. We also detected a significant positive correlation between the carbohydrate content of soil and MWD after tea plantation (P < 0.01). Notably, the association between dilute-acid extracted carbohydrate and the aggregate stability showed the highest correlation, indicating this carbohydrate fraction could be used as an index to reflect changes in soil quality during tea plantation development. We should develop a potential fertilisation programme to maintain SOM- Carbohydrates within aggregates and the appropriate pH for preventing soil structure degradation after 25 years of tea planting

Mode Reform of Sensor Courses Teaching in Civil Engineering Based on CDIO Education Concept

Based on education concept of CDIO (Conceive – Design – Implement – Operate) engineering, and combined with the requirements of the educational reform in colleges and universities, aimed at some problems existing in the Sensor course teaching of civil engineering, this paper suggests the reform approach from the prospects of teaching methods, teaching content, teaching environment, curriculum assessment pattern and so on, in order to enhance students' ability of applying software in drawing construction map, thus improve the teaching effect of this course