High prevalence of type 2 diabetes in Iraqi and Swedish residents in a deprived Swedish neighbourhood - a population based study

Background: Immigrants from the Middle-East are at high risk of developing type 2 diabetes (T2D). The aim of the present survey was to measure, in a single deprived neighbourhood, the prevalence rates of impaired fasting glucose (IFG), impaired glucose tolerance (IGT) and T2D in residents originating from Iraq and to compare them to those in residents born in Sweden. An additional aim was to identify metabolic, lifestyle and socioeconomic risk factors associated with IFG/IGT and T2D in these residents. Methods: The study was conducted February 1'st to March 31'st 2010. Men and women aged 45 to 65 years of Swedish or Iraqi origin, living in the neighbourhood of Rosengard, Malmo, Sweden, were randomly selected from the census register. Each participant signed a written informed consent form, underwent a physical examination and an oral glucose tolerance test (OGTT), provided blood samples and filled in a questionnaire. A total of 175 subjects participated (Swedish origin n = 79, Iraqi origin n = 96), reflecting an overall response rate of almost 60%. Results: In total, 21.9% and 19.0% of the Iraqi and Swedish participants, respectively, suffered from T2D, while 24.0% of the Iraqi participants and 25.3% of the Swedish participants had IFG/IGT. There were no significant differences in prevalence rates relating to country of origin. Obesity (BMI >= 30 kg/m(2)) and sedentary leisure time physical activity were highly prevalent in both groups, while a family history of diabetes was more prevalent in participants from Iraq (49.2%) than in those from Sweden (22.8%) (p = 0.001). Being obese or having a sedentary leisure time were, independently associated with T2D (OR 5.43 (95% CI 2.10-14.02) and 2.89 (95% CI 1.03-8.10) respectively), while economic difficulties were independently associated with IFG/IGT (OR 2.55 (95% CI 1.06-6.15)) after adjustment for the confounding effects of other common risk factors for T2D. Conclusions: This study reveals a high prevalence of T2D, independently of country of origin (Iraq or Sweden), in a socially vulnerable area and additionally presents a risk factor profile that is markedly different from that of Sweden in general

Bimodality and alternative equilibria do not help explain long-term patterns in shallow lake chlorophyll-a

Since its inception, the theory of alternative equilibria in shallow lakes has evolved and been applied to an ever wider range of ecological and socioecological systems. The theory posits the existence of two alternative stable states or equilibria, which in shallow lakes are characterised by either clear water with abundant plants or turbid water where phytoplankton dominate. Here, we used data simulations and real-world data sets from Denmark and north-eastern USA (902 lakes in total) to examine the relationship between shallow lake phytoplankton biomass (chlorophyll-a) and nutrient concentrations across a range of timescales. The data simulations demonstrated that three diagnostic tests could reliably identify the presence or absence of alternative equilibria. The real-world data accorded with data simulations where alternative equilibria were absent. Crucially, it was only as the temporal scale of observation increased (>3 years) that a predictable linear relationship between nutrient concentration and chlorophyll-a was evident. Thus, when a longer term perspective is taken, the notion of alternative equilibria is not required to explain the response of chlorophyll-a to nutrient enrichment which questions the utility of the theory for explaining shallow lake response to, and recovery from, eutrophication.C.D.S. and T.A.D. would like to thank June and Derek Sayer for extraordinary support over many years. The authors of this work have been supported by a number of projects over the elephantine gestation period of this manuscript. These include support from the Poul Due Jensen Fonden, Danmarks Frie Forskningsfond Natur og Univers project GREENLAKES (No. 9040-00195B) and the UFM-funded project LTER_DK for Long Term Ecosystem Research in Denmark. In addition, support was provided by The European Union’s Horizon 2020 research and innovation programmes under grant agreement No 869296—The PONDERFUL Project”, TREICLAKE under grant agreement No 951963, and the AQUACOSM project and by the European Commission EU H2020- INFRAIA-project (No. 731065) and AQUACOSMplus (No. 871081). E.J. was also supported by the TÜBITAK outstanding researcher programme2232 (project 118C250) and AnaEE, Denmark. The work of D.G. was funded by the Fourth Period of Programme-oriented Funding, Helmholtz Association of German ResearchCentres, Research Field Earth and Environment.C.D.S. and T.A.D. would like to thank June and Derek Sayer for extraordinary support over many years. The authors of this work have been supported by a number of projects over the elephantine gestation period of this manuscript. These include support from the Poul Due Jensen Fonden, Danmarks Frie Forskningsfond Natur og Univers project GREENLAKES (No. 9040-00195B) and the UFM-funded project LTER_DK for Long Term Ecosystem Research in Denmark. In addition, support was provided by The European Union’s Horizon 2020 research and innovation programmes under grant agreement No 869296—The PONDERFUL Project”, TREICLAKE under grant agreement No 951963, and the AQUACOSM project and by the European Commission EU H2020- INFRAIA-project (No. 731065) and AQUACOSMplus (No. 871081). E.J. was also supported by the TÜBITAK outstanding researcher programme2232 (project 118C250) and AnaEE, Denmark. The work of D.G. was funded by the Fourth Period of Programme-oriented Funding, Helmholtz Association of German ResearchCentres, Research Field Earth and Environment

Kolningkurs 2009-2010 vid SLU i Umeå

Under 2009-2010 genomfördes en kurs i kolning med både teoretiska och praktiska inslag vid institutionen för skogens ekologi och skötsel vid Sveriges Lantbruksuniversitet i Umeå. Kursen som omfattade 15 hp initierades av åtta intresserade elever från kurs 07/12; Håkan Johansson, Carl Kling, Henrik Nises, Jonas Strandberg, Erik Sundström, Jonas Svensson, Erik Söderberg, Daniel Timblad. Inom ramen för kursen så genomfördes olika aktiviteter; en serie litteratur-seminarer om kolningens historia och praktik samt om kolningen i ett internationellt perspektiv, omsorgsfullt förberedande och praktisk genomförande av milkolning samt intervjuer med äldre personer som kolat tidigare. Slutresultatet av arbetet presenteras i föreliggande rapport samt i form av ett bildspel och en kort videofilm från kolningen. Allt arbete finns tillgängligt via Epsilon på Skogsbibliotekets hemsida. Professor Lars Östlund ([email protected]) har varit ansvarig och examinerande lärare för denna kurs, men arbetet har i hög grad byggt på studenternas egna initiativ och eget arbete. Rapporten är indelad i tre avsnitt: 1) Kolningsdagbok inklusive litteraturlista 2) Kolningsintervju 1: Kurt Johansson i Långträsk 3) Kolningsintervju 2: Martin Åslin i Gnar

The effectiveness of policies promoting sustainable permanent grasslands across five European countries (representing five biogeographic regions): mapping, understanding, and key stakeholder perceptions

The purpose of this report is to identify, map, and evaluate the most relevant European policies seen to influence permanent grassland (PG) management. To accomplish this, an interdisciplinary, crossnational team from the UK, Switzerland, Spain, Czech Republic, and Sweden reviewed over 50 in-depth policy frameworks. With direction from expert stakeholders and a review of the policy landscape, we identified the most relevant policy instruments influencing PGs across five different biogeographic regions in Europe (Alpine, Atlantic, Boreal, Continental, and Mediterranean). The mapping of each country’s policy mix was guided inter-alia by a ‘cascade framework’ to illustrate the entry points, intermediary actors, mechanisms and pathways through which policies deliver their intended effects on PGs. This entailed an in-depth analysis of publicly available government sources documenting the aims, objectives, targets, monitoring systems, outputs and outcomes of each policy instrument. In total, 24 policies were mapped using 50 different criteria, with 15 of the policies unique to the case study countries. This resulted in an extensive excel database of over 3400 unique cells containing rich qualitative data. The excel data were coded in a consistent manner across the country teams so that they could be compared, synthesized, and used to identify patterns in the policy mix and logic of intervention. We show, for instance, that across Europe, the dominant policy logic uses regulations and incentives to influence farmer adoption of desired landscape compositions. This directly influences, but does not guarantee, the range of ecosystem services (ES) that are possible from the landscape. At the same time, we discovered a lack of policies targeting consumer demand for PG ecosystem services and only a few designed to drive sustainable PG management by directly promoting the value of PGs with beneficiaries. To complement the policy mapping, stakeholders’ assessed the perceived effectiveness of the policy mix in each country. This evaluation included over 50 interviews with key stakeholders across Europe representing government, academia, farmers, and special interests, and covered perceptions of democracy, legitimacy, relevance, efficiency and impact in relation to the effectiveness of policies relevant to the management of PG. Our findings reveal generally positive perceptions of grassland policy effectiveness across Europe, with special interest groups being the least positive and governments the most. The in-depth country case studies reveal striking similarities, as well as differences between countries and stakeholder groups, which are illustrative of the problems, challenges, and barriers confronting policy effectiveness. We conclude this report by offering insights and policy implications. In particular, we suggest that the following four points are taken into consideration to improve the PG policy landscape: 1) Reduce complexity and administrative burden to make policies more understandable and accessible. 2) Require stakeholder involvement when developing strategic plans and assessing policy. 3) Encourage consideration of trade-offs between PG management and ES delivery, by designing policies to explicitly target the interaction between landscape structures and ES (or target them in parallel). 4) Encourage a balance of policy logic, by moving away from targeting farmers with regulation or subsidies to manage the landscape towards targeting consumer demand for ES (through information) and the value of ES (such as direct payments for regulating and cultural services)

Rare and low-frequency coding variants alter human adult height

Height is a highly heritable, classic polygenic trait with ~700 common associated variants identified so far through genome - wide association studies . Here , we report 83 height - associated coding variants with lower minor allele frequenc ies ( range of 0.1 - 4.8% ) and effects of up to 2 16 cm /allele ( e.g. in IHH , STC2 , AR and CRISPLD2 ) , >10 times the average effect of common variants . In functional follow - up studies, rare height - increasing alleles of STC2 (+1 - 2 cm/allele) compromise d proteolytic inhibition of PAPP - A and increased cleavage of IGFBP - 4 in vitro , resulting in higher bioavailability of insulin - like growth factors . The se 83 height - associated variants overlap genes mutated in monogenic growth disorders and highlight new biological candidates ( e.g. ADAMTS3, IL11RA, NOX4 ) and pathways ( e.g . proteoglycan/ glycosaminoglycan synthesis ) involved in growth . Our results demonstrate that sufficiently large sample sizes can uncover rare and low - frequency variants of moderate to large effect associated with polygenic human phenotypes , and that these variants implicate relevant genes and pathways

New genetic loci link adipose and insulin biology to body fat distribution.

Body fat distribution is a heritable trait and a well-established predictor of adverse metabolic outcomes, independent of overall adiposity. To increase our understanding of the genetic basis of body fat distribution and its molecular links to cardiometabolic traits, here we conduct genome-wide association meta-analyses of traits related to waist and hip circumferences in up to 224,459 individuals. We identify 49 loci (33 new) associated with waist-to-hip ratio adjusted for body mass index (BMI), and an additional 19 loci newly associated with related waist and hip circumference measures (P < 5 × 10(-8)). In total, 20 of the 49 waist-to-hip ratio adjusted for BMI loci show significant sexual dimorphism, 19 of which display a stronger effect in women. The identified loci were enriched for genes expressed in adipose tissue and for putative regulatory elements in adipocytes. Pathway analyses implicated adipogenesis, angiogenesis, transcriptional regulation and insulin resistance as processes affecting fat distribution, providing insight into potential pathophysiological mechanisms

Multiple novel prostate cancer susceptibility signals identified by fine-mapping of known risk loci among Europeans

Genome-wide association studies (GWAS) have identified numerous common prostate cancer (PrCa) susceptibility loci. We have fine-mapped 64 GWAS regions known at the conclusion of the iCOGS study using large-scale genotyping and imputation in 25 723 PrCa cases and 26 274 controls of European ancestry. We detected evidence for multiple independent signals at 16 regions, 12 of which contained additional newly identified significant associations. A single signal comprising a spectrum of correlated variation was observed at 39 regions; 35 of which are now described by a novel more significantly associated lead SNP, while the originally reported variant remained as the lead SNP only in 4 regions. We also confirmed two association signals in Europeans that had been previously reported only in East-Asian GWAS. Based on statistical evidence and linkage disequilibrium (LD) structure, we have curated and narrowed down the list of the most likely candidate causal variants for each region. Functional annotation using data from ENCODE filtered for PrCa cell lines and eQTL analysis demonstrated significant enrichment for overlap with bio-features within this set. By incorporating the novel risk variants identified here alongside the refined data for existing association signals, we estimate that these loci now explain ∼38.9% of the familial relative risk of PrCa, an 8.9% improvement over the previously reported GWAS tag SNPs. This suggests that a significant fraction of the heritability of PrCa may have been hidden during the discovery phase of GWAS, in particular due to the presence of multiple independent signals within the same regio

Search for dark matter produced in association with bottom or top quarks in √s = 13 TeV pp collisions with the ATLAS detector

A search for weakly interacting massive particle dark matter produced in association with bottom or top quarks is presented. Final states containing third-generation quarks and miss- ing transverse momentum are considered. The analysis uses 36.1 fb−1 of proton–proton collision data recorded by the ATLAS experiment at √s = 13 TeV in 2015 and 2016. No significant excess of events above the estimated backgrounds is observed. The results are in- terpreted in the framework of simplified models of spin-0 dark-matter mediators. For colour- neutral spin-0 mediators produced in association with top quarks and decaying into a pair of dark-matter particles, mediator masses below 50 GeV are excluded assuming a dark-matter candidate mass of 1 GeV and unitary couplings. For scalar and pseudoscalar mediators produced in association with bottom quarks, the search sets limits on the production cross- section of 300 times the predicted rate for mediators with masses between 10 and 50 GeV and assuming a dark-matter mass of 1 GeV and unitary coupling. Constraints on colour- charged scalar simplified models are also presented. Assuming a dark-matter particle mass of 35 GeV, mediator particles with mass below 1.1 TeV are excluded for couplings yielding a dark-matter relic density consistent with measurements