22 research outputs found
Large expert-curated database for benchmarking document similarity detection in biomedical literature search
Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe
Recommended from our members
Superconducting magnets, cryostats, and cryogenics for the interaction region of the SSC
The Superconducting Super Collider (SSC) has two counterrotating 20-TeV proton beams that will be made to collide at specific interaction points to carry out high energy physics experiments. The Collider ring has two sites, West and East, for such Interaction Regions (IRs), and the conceptual design of the East Interaction Region is underway. The East IR, in the present stage of design, has two interaction points, the requirements for which have been specified in terms of distance L* to the nearest magnet and the beam luminosity. Based on these requirements, the optics for transition from arc regions or utility regions to the IR and for focusing the beams have been obtained. The optical arrangement consists of a tuning section of quadrupoles, the strength of which is adjusted to obtain the required beta squeeze; a pair of bending dipoles to reduce the beam separation from the nominal 900 mm to 450 mm; an achromat section of quadrupoles, which consist of two cold masses in one cryostat; another pair of dipoles to bring the beams together at the required crossing angle; and a set of final focus quads facing the interaction point. The optics is symmetric about the interaction point, and the two interaction points are separated by a hinge region consisting of superconducting dipoles and quadrupoles similar to the arc region. In the regions where the beams are vertically bent and straightened out by dipoles, the beam traverses warm regions provided for placing beam collimators. The superconducting magnets, including the final focus quadrupoles, operate with supercritical He at 4 atm and a nominal temperature of 4.15 K. In this paper, descriptions of the magnets, the cryostats, and cryo bypasses around the warm region and interaction points are provided. Also discussed are the cooling requirements and design for the final focus quadrupole, which receives significant heat load from beam radiation