Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe

Actively implementing an evidence-based feeding guideline for critically ill patients (NEED): a multicenter, cluster-randomized, controlled trial

Background: Previous cluster-randomized controlled trials evaluating the impact of implementing evidence-based guidelines for nutrition therapy in critical illness do not consistently demonstrate patient benefits. A large-scale, sufficiently powered study is therefore warranted to ascertain the effects of guideline implementation on patient-centered outcomes. Methods: We conducted a multicenter, cluster-randomized, parallel-controlled trial in intensive care units (ICUs) across China. We developed an evidence-based feeding guideline. ICUs randomly allocated to the guideline group formed a local "intervention team", which actively implemented the guideline using standardized educational materials, a graphical feeding protocol, and live online education outreach meetings conducted by members of the study management committee. ICUs assigned to the control group remained unaware of the guideline content. All ICUs enrolled patients who were expected to stay in the ICU longer than seven days. The primary outcome was all-cause mortality within 28 days of enrollment. Results: Forty-eight ICUs were randomized to the guideline group and 49 to the control group. From March 2018 to July 2019, the guideline ICUs enrolled 1399 patients, and the control ICUs enrolled 1373 patients. Implementation of the guideline resulted in significantly earlier EN initiation (1.20 vs. 1.55 mean days to initiation of EN; difference − 0.40 [95% CI − 0.71 to − 0.09]; P = 0.01) and delayed PN initiation (1.29 vs. 0.80 mean days to start of PN; difference 1.06 [95% CI 0.44 to 1.67]; P = 0.001). There was no significant difference in 28-day mortality (14.2% vs. 15.2%; difference − 1.6% [95% CI − 4.3% to 1.2%]; P = 0.42) between groups. Conclusions: In this large-scale, multicenter trial, active implementation of an evidence-based feeding guideline reduced the time to commencement of EN and overall PN use but did not translate to a reduction in mortality from critical illness. Trial registration: ISRCTN, ISRCTN12233792. Registered November 20th, 2017

Actively implementing an evidence-based feeding guideline for critically ill patients (NEED): a multicenter, cluster-randomized, controlled trial.

BackgroundPrevious cluster-randomized controlled trials evaluating the impact of implementing evidence-based guidelines for nutrition therapy in critical illness do not consistently demonstrate patient benefits. A large-scale, sufficiently powered study is therefore warranted to ascertain the effects of guideline implementation on patient-centered outcomes.MethodsWe conducted a multicenter, cluster-randomized, parallel-controlled trial in intensive care units (ICUs) across China. We developed an evidence-based feeding guideline. ICUs randomly allocated to the guideline group formed a local "intervention team", which actively implemented the guideline using standardized educational materials, a graphical feeding protocol, and live online education outreach meetings conducted by members of the study management committee. ICUs assigned to the control group remained unaware of the guideline content. All ICUs enrolled patients who were expected to stay in the ICU longer than seven days. The primary outcome was all-cause mortality within 28 days of enrollment.ResultsForty-eight ICUs were randomized to the guideline group and 49 to the control group. From March 2018 to July 2019, the guideline ICUs enrolled 1399 patients, and the control ICUs enrolled 1373 patients. Implementation of the guideline resulted in significantly earlier EN initiation (1.20 vs. 1.55 mean days to initiation of EN; difference - 0.40 [95% CI - 0.71 to - 0.09]; P = 0.01) and delayed PN initiation (1.29 vs. 0.80 mean days to start of PN; difference 1.06 [95% CI 0.44 to 1.67]; P = 0.001). There was no significant difference in 28-day mortality (14.2% vs. 15.2%; difference - 1.6% [95% CI - 4.3% to 1.2%]; P = 0.42) between groups.ConclusionsIn this large-scale, multicenter trial, active implementation of an evidence-based feeding guideline reduced the time to commencement of EN and overall PN use but did not translate to a reduction in mortality from critical illness.Trial registrationISRCTN, ISRCTN12233792 . Registered November 20th, 2017

Actively implementing an evidence-based feeding guideline for critically ill patients (NEED): a multicenter, cluster-randomized, controlled trial (vol 26, 46, 2022)

BackgroundPrevious cluster-randomized controlled trials evaluating the impact of implementing evidence-based guidelines for nutrition therapy in critical illness do not consistently demonstrate patient benefits. A large-scale, sufficiently powered study is therefore warranted to ascertain the effects of guideline implementation on patient-centered outcomes.MethodsWe conducted a multicenter, cluster-randomized, parallel-controlled trial in intensive care units (ICUs) across China. We developed an evidence-based feeding guideline. ICUs randomly allocated to the guideline group formed a local "intervention team", which actively implemented the guideline using standardized educational materials, a graphical feeding protocol, and live online education outreach meetings conducted by members of the study management committee. ICUs assigned to the control group remained unaware of the guideline content. All ICUs enrolled patients who were expected to stay in the ICU longer than seven days. The primary outcome was all-cause mortality within 28 days of enrollment.ResultsForty-eight ICUs were randomized to the guideline group and 49 to the control group. From March 2018 to July 2019, the guideline ICUs enrolled 1399 patients, and the control ICUs enrolled 1373 patients. Implementation of the guideline resulted in significantly earlier EN initiation (1.20 vs. 1.55 mean days to initiation of EN; difference - 0.40 [95% CI - 0.71 to - 0.09]; P = 0.01) and delayed PN initiation (1.29 vs. 0.80 mean days to start of PN; difference 1.06 [95% CI 0.44 to 1.67]; P = 0.001). There was no significant difference in 28-day mortality (14.2% vs. 15.2%; difference - 1.6% [95% CI - 4.3% to 1.2%]; P = 0.42) between groups.ConclusionsIn this large-scale, multicenter trial, active implementation of an evidence-based feeding guideline reduced the time to commencement of EN and overall PN use but did not translate to a reduction in mortality from critical illness.Trial registrationISRCTN, ISRCTN12233792 . Registered November 20th, 2017

LA-Containing SBA-15/H2O2 systems for the microwave assidted oxidation of a lignin model phenolic monower

A convenient and efficient application of heterogeneous Lanthanum-containing SBA-15systems for the microwave assisted oxidation of a lignin model phenolic monomer, 3-methoxy-4-hydroxybenzyl alcohol, is reported. Environmental friendly and low-cost H2O2 was used as theoxygen atom donor. The catalyst was prepared by immobilizing Lanthanum species on to the periodicmesoporous channels of siliceous SBA-15. Powder X-ray diffraction data and Inductively CoupledPlasma-Atomic Emission Spectroscopy (ICP-AES) revealed that the host retains its hexagonalmesoporous structure after immobilization and most of the lanthanum species are better dispersedin the calcined materials. The surface area and pore size of La/SBA-15 was considerably decreasedindicating the intrapore confinement of the Lanthanum species. The activity of the La/SBA-15 wasinvestigated in the oxidation of 3-methoxy-4-hydroxybenzyl alcohol in the presence of hydrogenperoxide as oxidant. 68% conversion of 3-methoxy-4-hydroxybenzyl alcohol to vanillin or otherundetectable by-products was obtained after 30 min of reaction under 200W microwave irradiation,compared to a poor 25% degradation after 24 h under conventional heating. The possibility ofrecycling the catalyst was studied

La-containing SBA-15/H2O2 systems for the microwave assisted oxidation of a lignin model phenolic monomer

A convenient and efficient application of heterogeneous Lanthanum-containing SBA-15 systems for the microwave assisted oxidation of a lignin model phenolic monomer, 3-methoxy- 4-hydroxybenzyl alcohol, is reported. Environmental friendly and low-cost H2O2 was used as the oxygen atom donor. The catalyst was prepared by immobilizing Lanthanum species on to the periodic mesoporous channels of siliceous SBA-15. Powder X-ray diffraction data and Inductively Coupled Plasma-Atomic Emission Spectroscopy (ICP-AES) revealed that the host retains its hexagonal mesoporous structure after immobilization and most of the lanthanum species are better dispersed in the calcined materials. The surface area and pore size of La/SBA-15 was considerably decreased indicating the intrapore confinement of the Lanthanum species. The activity of the La/SBA-15 was investigated in the oxidation of 3-methoxy-4-hydroxybenzyl alcohol in the presence of hydrogen peroxide as oxidant. 68% conversion of 3-methoxy-4-hydroxybenzyl alcohol to vanillin or other undetectable by-products was obtained after 30 min of reaction under 200W microwave irradiation, compared to a poor 25% degradation after 24 h under conventional heating. The possibility of recycling the catalyst was studied

Random Collective Representation-Based Detector with Multiple Features for Hyperspectral Images

Collaborative representation-based detector (CRD), as the most representative anomaly detection method, has been widely applied in the field of hyperspectral anomaly detection (HAD). However, the sliding dual window of the original CRD introduces high computational complexity. Moreover, most HAD models only consider a single spectral or spatial feature of the hyperspectral image (HSI), which is unhelpful for improving detection accuracy. To solve these problems, in terms of speed and accuracy, we propose a novel anomaly detection approach, named Random Collective Representation-based Detector with Multiple Feature (RCRDMF). This method includes the following steps. This method first extract the different features include spectral feature, Gabor feature, extended multiattribute profile (EMAP) feature, and extended morphological profile (EMP) feature matrix from the HSI image, which enables us to improve the accuracy of HAD by combining the multiple spectral and spatial features. The ensemble and random collaborative representation detector (ERCRD) method is then applied, which can improve the anomaly detection speed. Finally, an adaptive weight approach is proposed to calculate the weight for each feature. Experimental results on six hyperspectral datasets demonstrate that the proposed approach has the superiority over accuracy and speed

La-modified sba-15/h2o2 systems for the microwave assisted oxidation of organosolv beech wood lignin

In this manuscript, the influence of organosolv beech wood lignin (LOB) on its oxidative conver-sion to high added-value phenolic aldehydes is discussed. Environmental friendly and low-cost H2O2 was used as the oxygen atom donor. The catalyst was prepared by immobilizing Lanthanum com-pounds onto the periodic mesoporous channels of siliceous SBA-15. The activity of the La/SBA-15 was investigated towards oxidation of LOB in the presence of hydrogen peroxide as oxidant with microwave irradiation. Considering the characteristics of LOB, an unexpected low syringaldehyde concentration at 10min of reaction time (1.47 g/L, corresponding to 15.66% yield) was obtained; the other major product was vanillin at 25min (0.78 g/L, i.e., 9.94% yield). The high reactivity of syringyl nuclei may be pointed out as the main reason for the faster production and degradation of syringaldehyde in oxida-tion. Other low molecular weight phenolic products were found: vanillic acid, syringic acid and minor quantities of aceto-derivatives. The profile of products concentration with the reaction time of catalytic oxidation with microwave irradiation are shown and discussed with reference to the investigated lignin features. The mechanism of the microwave catalytic oxidation for LOB under alkaline conditions was proposed