A performance evaluation of commercial fibrinogen reference preparations and assays for Clauss and PT-derived fibrinogen

The wide availability of fibrinogen estimations based on the prothrombin time (PT-Fg) has caused concern about the variability and clinical utility of fibrinogen assays. In a multi-centre study, we investigated fibrinogen assays using various reagents and analysers, Clauss assays generally gave good agreement, although one reagent gave 15-30% higher values in DIC and thrombolysis. Two commercial reference preparations had much lower potencies than the manufacturers declared, and plasma turbidity influenced parallelism in some Clauss assays, PT-Fg assays gave higher values than Clauss and showed calibrant dependent effects, the degree of disparity correlating with calibrant and test sample turbidity. Analyser and thromboplastin dependent differences were noted. The relationship between Clauss and PT-Fg assays was sigmoid, and the plateau of maximal PT-Fg differed by about 2 g/l between reagents. ELISA and immunonephelometric assays correlated well, but with a high degree of scatter. Antigen levels were higher than Clauss, but slightly lower than PT-Fg assays, which appeared to be influenced by degraded fibrinogen. Clauss assays are generally reproducible between centres, analysers and reagents, but PT-Fg assays are not reliable in clinical settings

The effects of bottom trawling and primary production on the biological traits composition of benthic assemblages

Although many studies have investigated the effects of disturbance and environmental drivers on marine ecosystems, comparatively few have studied their interactions. Using fuzzy coded biological traits, we compared the functional composition, diversity and evenness of benthic communities in the English Channel and in the Celtic and Irish Seas across interacting gradients of bottom trawling and primary production. Fuzzy correspondence analysis indicated greater similarity in trait composition at sites of high trawling pressure than at those of low trawling. In contrast, the analysis revealed no relationship between trait composition and primary production. Trawling and primary production had no effect on the traits ‘longevity’, ‘sediment position’, or ‘feeding mode’. However, trawling had negative effects on all modalities within the trait ‘living habit’, and these effects were strongest for attached and epifaunal organisms but weakest for burrow- and tube-dwelling species. Trawling also negatively affected most modalities within the trait ‘maximum weight’, with strongest effects for organisms weighing between 10 kg. For the trait ‘bioturbation’, upward conveyors were positively related with primary production, whilst other modalities exhibited no clear pattern. Because trawling affected some traits more than others, community biomass was less evenly distributed across traits in highly trawled areas, which resulted in lower levels of functional diversity and evenness. Overall, the effects of bottom trawling were greater in areas of high primary production

Data reliability in citizen science: learning curve and the effects of training method, volunteer background and experience on identification accuracy of insects visiting ivy flowers

• Citizen science, the involvement of volunteers in collecting of scientific data, can be a useful research tool. However, data collected by volunteers are often of lower quality than that collected by professional scientists. • We studied the accuracy with which volunteers identified insects visiting ivy (Hedera) flowers in Sussex, England. In the first experiment, we examined the effects of training method, volunteer background and prior experience. Fifty-three participants were trained for the same duration using one of three different methods (pamphlet, pamphlet + slide show, pamphlet + direct training). Almost immediately following training, we tested the ability of participants to identify live insects on ivy flowers to one of 10 taxonomic categories and recorded whether their identifications were correct or incorrect, without providing feedback. • The results showed that the type of training method had a significant effect on identification accuracy (P = 0.008). Participants identified 79.1% of insects correctly after using a one-page colour pamphlet, 85.6% correctly after using the pamphlet and viewing a slide show, and 94.3% correctly after using the pamphlet in combination with direct training in the field. • As direct training cannot be delivered remotely, in the following year we conducted a second experiment, in which a different sample of 26 volunteers received the pamphlet plus slide show training repeatedly three times. Moreover, in this experiment participants received c. 2 minutes of additional training material, either videos of insects or stills taken from the videos. Testing showed that identification accuracy increased from 88.6% to 91.3% to 97.5% across the three successive tests. We also found a borderline significant interaction between the type of additional material and the test number (P = 0.053), such that the video gave fewer errors than stills in the first two tests only. • The most common errors made by volunteers were misidentifications of honey bees and social wasps with their hover fly mimics. We also tested six experts who achieved nearly perfect accuracy (99.8%), which shows what is possible in practice. • Overall, our study shows that two or three sessions of remote training can be as good as one of direct training, even for relatively challenging taxonomic discriminations that include distinguishing models and mimics

The learning sciences in the (Primary) Initial Teacher Education curriculum

Researchers from Bath Spa University reported on work funded by the Wellcome Trust aimed at introducing concepts from cognitive neuroscience into initial teacher education (ITE). The approach taken is framed by the Core Content Framework and Early Career Framework but goes beyond this to take a deeper look at how the newly established field of educational neuroscience is beginning to identify a wider set of key concepts for informing teacher education and development. They presented examples of developments across the Bath Spa University PGCE Primary and Early Years curriculum to explore the challenges encountered and propose ways forward. This included a look at new open-access resources developed by the team

The Learning Sciences and the Core Content Framework for Initial Teacher Training

This document is an outcome of the project 'The Learning Sciences in Initial Teacher Education' based at Bath Spa University (2019-2020) and funded by the Wellcome Trust. Our intention is to support teacher educators in responding to the 2019 Core Content Framework for Initial Teacher Training by exploring the underpinning research from the ‘Learning Sciences’

Projected impacts of increased uptake of source control mitigation measures on agricultural diffuse pollution emissions to water and air

The authors gratefully acknowledge the funding provided by Defra project LM0304; Phase 2 of the Avon Demonstration Test Catchment. The DTC farm survey data were collected in conjunction with the Avon (Defra project WQ0211), Wensum (Defra project WQ0212) and Eden (Defra project WQ02010) DTC programmes. The Environment Agency kindly provided access to national GIS layers. The authors thank the experts included in the elicitation exercise for current implementation of source control measures

Search for direct production of charginos and neutralinos in events with three leptons and missing transverse momentum in √s = 7 TeV pp collisions with the ATLAS detector

A search for the direct production of charginos and neutralinos in final states with three electrons or muons and missing transverse momentum is presented. The analysis is based on 4.7 fb−1 of proton–proton collision data delivered by the Large Hadron Collider and recorded with the ATLAS detector. Observations are consistent with Standard Model expectations in three signal regions that are either depleted or enriched in Z-boson decays. Upper limits at 95% confidence level are set in R-parity conserving phenomenological minimal supersymmetric models and in simplified models, significantly extending previous results

Jet size dependence of single jet suppression in lead-lead collisions at sqrt(s(NN)) = 2.76 TeV with the ATLAS detector at the LHC

Measurements of inclusive jet suppression in heavy ion collisions at the LHC provide direct sensitivity to the physics of jet quenching. In a sample of lead-lead collisions at sqrt(s) = 2.76 TeV corresponding to an integrated luminosity of approximately 7 inverse microbarns, ATLAS has measured jets with a calorimeter over the pseudorapidity interval |eta| < 2.1 and over the transverse momentum range 38 < pT < 210 GeV. Jets were reconstructed using the anti-kt algorithm with values for the distance parameter that determines the nominal jet radius of R = 0.2, 0.3, 0.4 and 0.5. The centrality dependence of the jet yield is characterized by the jet "central-to-peripheral ratio," Rcp. Jet production is found to be suppressed by approximately a factor of two in the 10% most central collisions relative to peripheral collisions. Rcp varies smoothly with centrality as characterized by the number of participating nucleons. The observed suppression is only weakly dependent on jet radius and transverse momentum. These results provide the first direct measurement of inclusive jet suppression in heavy ion collisions and complement previous measurements of dijet transverse energy imbalance at the LHC.Comment: 15 pages plus author list (30 pages total), 8 figures, 2 tables, submitted to Physics Letters B. All figures including auxiliary figures are available at http://atlas.web.cern.ch/Atlas/GROUPS/PHYSICS/PAPERS/HION-2011-02

Macrophyte abundance in Waquoit Bay : effects of land-derived nitrogen loads on seasonal and multi-year biomass patterns

Author Posting. © The Author(s), 2008. This is the author's version of the work. It is posted here by permission of Springer for personal use, not for redistribution. The definitive version was published in Estuaries and Coasts 31 (2008): 532-541, doi:10.1007/s12237-008-9039-6.Anthropogenic inputs of nutrients to coastal waters have rapidly restructured coastal ecosystems. To examine the response of macrophyte communities to land-derived nitrogen loading, we measured macrophyte biomass monthly for six years in three estuaries subject to different nitrogen loads owing to different land uses on the watersheds. The set of estuaries sampled had nitrogen loads over the broad range of 12 to 601 kg N ha-1 y-1. Macrophyte biomass increased as nitrogen loads increased, but the response of individual taxa varied. Specifically, biomass of Cladophora vagabunda and Gracilaria tikvahiae increased significantly as nitrogen loads increased. The biomass of other macroalgal taxa tended to decrease with increasing load, and the relative proportion of these taxa to total macrophyte biomass also decreased. The seagrass, Zostera marina, disappeared from the higher loaded estuaries, but remained abundant in the estuary with the lowest load. Seasonal changes in macroalgal standing stock were also affected by nitrogen load, with larger fluctuations in biomass across the year and higher minimum biomass of macroalgae in the higher loaded estuaries. There were no significant changes in macrophyte biomass over the six years of this study, but there was a slight trend of increasing macroalgal biomass in the latter years. Macroalgal biomass was not related to irradiance or temperature, but Z. marina biomass was highest during the summer months when light and temperatures peak. Irradiance might, however, be a secondary limiting factor controlling macroalgal biomass in the higher loaded estuaries by restricting the depth of the macroalgal canopy. The relationship between the bloom-forming macroalgal species, C. vagabunda and G. tikvahiae, and nitrogen loads suggested a strong connection between development on watersheds and macroalgal blooms and loss of seagrasses. The influence of watershed land uses largely overwhelmed seasonal and inter-annual differences in standing stock of macrophytes in these temperate estuaries.This research was supported by the National Oceanic and Atmospheric Administration (NOAA), Cooperative Institute for Coastal and Estuarine Environmental Technologies (CICEET-UNH#99-304, NOAA NA87OR512), NOAA National Estuarine Research Reserve Graduate Research Fellowship NERRS GRF, #NA77OR0228), and an Environmental Protection Agency (EPA) STAR Fellowship for Graduate Environmental Study (U-915335-01-0) awarded to J. Hauxwell. S. Fox was supported by a NOAA NERRS GRF (#NA03NOS4200132) and an EPA STAR Graduate Research Fellowship. We also thank the Quebec-Labrador Foundation Atlantic Center for the Environment's Sounds Conservancy Program and the Boston University Ablon/Bay Committee for their awarding research funds

Epithelial IL-6 trans-signaling defines a new asthma phenotype with increased airway inflammation

Background: Although several studies link high levels of IL-6 and soluble IL-6 receptor (sIL-6R) to asthma severity and decreased lung function, the role of IL-6 trans-signaling (IL-6TS) in asthmatic patients is unclear. Objective: We sought to explore the association between epithelial IL-6TS pathway activation and molecular and clinical phenotypes in asthmatic patients. Methods: An IL-6TS gene signature obtained from air-liquid interface cultures of human bronchial epithelial cells stimulated with IL-6 and sIL-6R was used to stratify lung epithelial transcriptomic data (Unbiased Biomarkers in Prediction of Respiratory Disease Outcomes [U-BIOPRED] cohorts) by means of hierarchical clustering. IL-6TS-specific protein markers were used to stratify sputum biomarker data (Wessex cohort). Molecular phenotyping was based on transcriptional profiling of epithelial brushings, pathway analysis, and immunohistochemical analysis of bronchial biopsy specimens. Results: Activation of IL-6TS in air-liquid interface cultures reduced epithelial integrity and induced a specific gene signature enriched in genes associated with airway remodeling. The IL-6TS signature identified a subset of patients with IL-6TS-high asthma with increased epithelial expression of IL-6TS-inducible genes in the absence of systemic inflammation. The IL-6TS-high subset had an overrepresentation of frequent exacerbators, blood eosinophilia, and submucosal infiltration of T cells and macrophages. In bronchial brushings Toll-like receptor pathway genes were upregulated, whereas expression of cell junction genes was reduced. Sputum sIL-6R and IL-6 levels correlated with sputum markers of remodeling and innate immune activation, in particular YKL-40, matrix metalloproteinase 3, macrophage inflammatory protein 1 beta, IL-8, and IL-1 beta. Conclusions: Local lung epithelial IL-6TS activation in the absence of type 2 airway inflammation defines a novel subset of asthmatic patients and might drive airway inflammation and epithelial dysfunction in these patients.Peer reviewe