Benchmarking Individual Tree Mapping with Sub-meter Imagery

There is a rising interest in mapping trees using satellite or aerial imagery, but there is no standardized evaluation protocol for comparing and enhancing methods. In dense canopy areas, the high variability of tree sizes and their spatial proximity makes it arduous to define the quality of the predictions. Concurrently, object-centric approaches such as bounding box detection usuallyperform poorly on small and dense objects. It thus remains unclear what is the ideal framework for individual tree mapping, in regards to detection and segmentation approaches, convolutional neural networks and transformers. In this paper, we introduce an evaluation framework suited for individual tree mapping in any physical environment, with annotation costs and applicative goals in mind. We review and compare different approaches and deep architectures, and introduce a new method that we experimentally prove to be a good compromise between segmentation and detection

Not all parents are equal for MO-CMA-ES

International audienceThe Steady State variants of the Multi-Objective Covariance Matrix Adaptation Evolution Strategy (SS-MO-CMA-ES) generate one offspring from a uniformly selected parent. Some other parental selection operators for SS-MO-CMA-ES are investigated in this paper. These operators involve the definition of multi-objective rewards, estimating the expectation of the offspring survival and its Hypervolume contribution. Two selection modes, respectively using tournament, and inspired from the Multi-Armed Bandit framework, are used on top of these rewards. Extensive experimental validation comparatively demonstrates the merits of these new selection operators on unimodal MO problems

The International Workshop on Osteoarthritis Imaging Knee MRI Segmentation Challenge: A Multi-Institute Evaluation and Analysis Framework on a Standardized Dataset

Purpose: To organize a knee MRI segmentation challenge for characterizing the semantic and clinical efficacy of automatic segmentation methods relevant for monitoring osteoarthritis progression. Methods: A dataset partition consisting of 3D knee MRI from 88 subjects at two timepoints with ground-truth articular (femoral, tibial, patellar) cartilage and meniscus segmentations was standardized. Challenge submissions and a majority-vote ensemble were evaluated using Dice score, average symmetric surface distance, volumetric overlap error, and coefficient of variation on a hold-out test set. Similarities in network segmentations were evaluated using pairwise Dice correlations. Articular cartilage thickness was computed per-scan and longitudinally. Correlation between thickness error and segmentation metrics was measured using Pearson's coefficient. Two empirical upper bounds for ensemble performance were computed using combinations of model outputs that consolidated true positives and true negatives. Results: Six teams (T1-T6) submitted entries for the challenge. No significant differences were observed across all segmentation metrics for all tissues (p=1.0) among the four top-performing networks (T2, T3, T4, T6). Dice correlations between network pairs were high (>0.85). Per-scan thickness errors were negligible among T1-T4 (p=0.99) and longitudinal changes showed minimal bias (<0.03mm). Low correlations (<0.41) were observed between segmentation metrics and thickness error. The majority-vote ensemble was comparable to top performing networks (p=1.0). Empirical upper bound performances were similar for both combinations (p=1.0). Conclusion: Diverse networks learned to segment the knee similarly where high segmentation accuracy did not correlate to cartilage thickness accuracy. Voting ensembles did not outperform individual networks but may help regularize individual models.Comment: Submitted to Radiology: Artificial Intelligence; Fixed typo

A Fast Hypervolume Driven Selection Mechanism for Many-Objective Optimisation Problems.

Solutions to real-world problems often require the simultaneous optimisation of multiple conflicting objectives. In the presence of four or more objectives, the problem is referred to as a “many-objective optimisation problem”. A problem of this category introduces many challenges, one of which is the effective and efficient selection of optimal solutions. The hypervolume indicator (or s-metric), i.e. the size of dominated objective space, is an effective selection criterion for many-objective optimisation. The indicator is used to measure the quality of a nondominated set, and can be used to sort solutions for selection as part of the contributing hypervolume indicator. However, hypervolume based selection methods can have a very high, if not infeasible, computational cost. The present study proposes a novel hypervolume driven selection mechanism for many-objective problems, whilst maintaining a feasible computational cost. This approach, named the Hypervolume Adaptive Grid Algorithm (HAGA), uses two-phases (narrow and broad) to prevent population-wide calculation of the contributing hypervolume indicator. Instead, HAGA only calculates the contributing hypervolume indicator for grid populations, i.e. for a few solutions, which are close in proximity (in the objective space) to a candidate solution when in competition for survival. The result is a trade-off between complete accuracy in selecting the fittest individuals in regards to hypervolume quality, and a feasible computational time in many-objective space. The real-world efficiency of the proposed selection mechanism is demonstrated within the optimisation of a classifier for concealed weapon detection

Seismically invisible fault zones: Laboratory insights into imaging faults in anisotropic rocks

Phyllosilicate‐rich rocks which commonly occur within fault zones cause seismic velocity anisotropy. However, anisotropy is not always taken into account in seismic imaging and the extent of the anisotropy is often unknown. Laboratory measurements of the velocity anisotropy of fault zone rocks and gouge from the Carboneras fault zone in SE Spain indicate 10–15% velocity anisotropy in the gouge and 35–50% anisotropy in the mica‐schist protolith. Greater differences in velocity are observed between the fast and slow directions in the mica‐schist rock than between the gouge and the slow direction of the rock. This implies that the orientation of the anisotropy with respect to the fault is key in imaging the fault seismically. For example, for fault‐parallel anisotropy, a significantly greater velocity contrast between fault gouge and rock will occur along the fault than across it, highlighting the importance of considering the foliation orientation in design of seismic experiments

A theoretical and empirical study on unbiased boundary-extended crossover for real-valued representation

Copyright © 2012 Elsevier. NOTICE: this is the author’s version of a work that was accepted for publication in Information Sciences. Changes resulting from the publishing process, such as peer review, editing, corrections, structural formatting, and other quality control mechanisms may not be reflected in this document. Changes may have been made to this work since it was submitted for publication. A definitive version was subsequently published in Information Sciences Vol. 183 Issue 1 (2012), DOI: 10.1016/j.ins.2011.07.013We present a new crossover operator for real-coded genetic algorithms employing a novel methodology to remove the inherent bias of pre-existing crossover operators. This is done by transforming the topology of the hyper-rectangular real space by gluing opposite boundaries and designing a boundary extension method for making the fitness function smooth at the glued boundary. We show the advantages of the proposed crossover by comparing its performance with those of existing ones on test functions that are commonly used in the literature, and a nonlinear regression on a real-world dataset

Metaheuristic design of feedforward neural networks: a review of two decades of research

Over the past two decades, the feedforward neural network (FNN) optimization has been a key interest among the researchers and practitioners of multiple disciplines. The FNN optimization is often viewed from the various perspectives: the optimization of weights, network architecture, activation nodes, learning parameters, learning environment, etc. Researchers adopted such different viewpoints mainly to improve the FNN's generalization ability. The gradient-descent algorithm such as backpropagation has been widely applied to optimize the FNNs. Its success is evident from the FNN's application to numerous real-world problems. However, due to the limitations of the gradient-based optimization methods, the metaheuristic algorithms including the evolutionary algorithms, swarm intelligence, etc., are still being widely explored by the researchers aiming to obtain generalized FNN for a given problem. This article attempts to summarize a broad spectrum of FNN optimization methodologies including conventional and metaheuristic approaches. This article also tries to connect various research directions emerged out of the FNN optimization practices, such as evolving neural network (NN), cooperative coevolution NN, complex-valued NN, deep learning, extreme learning machine, quantum NN, etc. Additionally, it provides interesting research challenges for future research to cope-up with the present information processing era

A multi-tier adaptive grid algorithm for the evolutionary multi-objective optimisation of complex problems

The multi-tier Covariance Matrix Adaptation Pareto Archived Evolution Strategy (m-CMA-PAES) is an evolutionary multi-objective optimisation (EMO) algorithm for real-valued optimisation problems. It combines a non-elitist adaptive grid based selection scheme with the efficient strategy parameter adaptation of the elitist Covariance Matrix Adaptation Evolution Strategy (CMA-ES). In the original CMA-PAES, a solution is selected as a parent for the next population using an elitist adaptive grid archiving (AGA) scheme derived from the Pareto Archived Evolution Strategy (PAES). In contrast, a multi-tiered AGA scheme to populate the archive using an adaptive grid for each level of non-dominated solutions in the considered candidate population is proposed. The new selection scheme improves the performance of the CMA-PAES as shown using benchmark functions from the ZDT, CEC09, and DTLZ test suite in a comparison against the (μ+λ) μ λ Multi-Objective Covariance Matrix Adaptation Evolution Strategy (MO-CMA-ES). In comparison with MO-CMA-ES, the experimental results show that the proposed algorithm offers up to a 69 % performance increase according to the Inverse Generational Distance (IGD) metric

Covariance Matrix Adaptation Pareto Archived Evolution Strategy with Hypervolume-sorted Adaptive Grid Algorithm.

Real-world problems often involve the optimisation of multiple conflicting objectives. These problems, referred to as multi-objective optimisation problems, are especially challenging when more than three objectives are considered simultaneously. This paper proposes an algorithm to address this class of problems. The proposed algorithm is an evolutionary algorithm based on an evolution strategy framework, and more specifically, on the Covariance Matrix Adaptation Pareto Archived Evolution Strategy (CMA-PAES). A novel selection mechanism is introduced and integrated within the framework. This selection mechanism makes use of an adaptive grid to perform a local approximation of the hypervolume indicator which is then used as a selection criterion. The proposed implementation, named Covariance Matrix Adaptation Pareto Archived Evolution Strategy with Hypervolume-sorted Adaptive Grid Algorithm (CMA-PAES-HAGA), overcomes the limitation of CMA-PAES in handling more than two objectives and displays a remarkably good performance on a scalable test suite in five, seven, and ten-objective problems. The performance of CMA-PAES-HAGA has been compared with that of a competition winning meta-heuristic, representing the state-of-the-art in this sub-field of multi-objective optimisation. The proposed algorithm has been tested in a seven-objective real-world application, i.e. the design of an aircraft lateral control system. In this optimisation problem, CMA-PAES-HAGA greatly outperformed its competitors

An Investigation of a Role for U2 snRNP Spliceosomal Components in Regulating Transcription

There is mounting evidence to suggest that the synthesis of pre-mRNA transcripts and their subsequent splicing are coordinated events. Previous studies have implicated the mammalian spliceosomal U2 snRNP as having a novel role in stimulating transcriptional elongation in vitro through interactions with the elongation factors P-TEFb and Tat-SF1; however, the mechanism remains unknown [1]. These factors are conserved in Saccharomyces cerevisiae, a fact that suggests that a similar interaction may occur in yeast to stimulate transcriptional elongation in vivo. To address this possibility we have looked for evidence of a role for the yeast Tat-SF1 homolog, Cus2, and the U2 snRNA in regulating transcription. Specifically, we have performed a genetic analysis to look for functional interactions between Cus2 or U2 snRNA and the P-TEFb yeast homologs, the Bur1/2 and Ctk1/2/3 complexes. In addition, we have analyzed Cus2-deleted or -overexpressing cells and U2 snRNA mutant cells to determine if they show transcription-related phenotypes similar to those displayed by the P-TEFb homolog mutants. In no case have we been able to observe phenotypes consistent with a role for either spliceosomal factor in transcription elongation. Furthermore, we did not find evidence for physical interactions between the yeast U2 snRNP factors and the P-TEFb homologs. These results suggest that in vivo, S. cerevisiae do not exhibit functional or physical interactions similar to those exhibited by their mammalian counterparts in vitro. The significance of the difference between our in vivo findings and the previously published in vitro results remains unclear; however, we discuss the potential importance of other factors, including viral proteins, in mediating the mammalian interactions