The similar and different evolutionary trends of MATE family occurred between rice and Arabidopsis thaliana

Expression profiles of Arabidopsis MATE genes under various stress. (TIFF 5235 kb

Stair-like Multivariable Generalized Predictive Control of Pulverizing System in Thermal Power Plants

Pulverizing system is an important part in the clean and efficient utilization of coal in thermal power plant, and the optimal control of the system is an important way to achieve this goal. This paper presents a stair-like multivariable generalized predictive control scheme for a pulverizing system. This control scheme focuses on the problem of predictive control algorithm in practical application, and integrates the feedforward experience in traditional control schemes of pulverizing system. Simulation results showed that the scheme are able to realize the decoupling control of the pulverizing system, avoid the problem of matrix inversion, reduce the amount of calculation, and has certain engineering application value

Genome-Wide Association Studies Identified Three Independent Polymorphisms Associated with α-Tocopherol Content in Maize Kernels

Tocopherols are a class of four natural compounds that can provide nutrition and function as antioxidant in both plants and animals. Maize kernels have low α-tocopherol content, the compound with the highest vitamin E activity, thus, raising the risk of vitamin E deficiency in human populations relying on maize as their primary vitamin E source. In this study, two insertion/deletions (InDels) within a gene encoding γ-tocopherol methyltransferase, Zea mays VTE4 (ZmVTE4), and a single nucleotide polymorphism (SNP) located ∼85 kb upstream of ZmVTE4 were identified to be significantly associated with α-tocopherol levels in maize kernels by conducting an association study with a panel of ∼500 diverse inbred lines. Linkage analysis in three populations that segregated at either one of these three polymorphisms but not at the other two suggested that the three polymorphisms could affect α-tocopherol content independently. Furthermore, we found that haplotypes of the two InDels could explain ∼33% of α-tocopherol variation in the association panel, suggesting ZmVTE4 is a major gene involved in natural phenotypic variation of α-tocopherol. One of the two InDels is located within the promoter region and associates with ZmVTE4 transcript level. This information can not only help in understanding the underlying mechanism of natural tocopherol variations in maize kernels, but also provide valuable markers for marker-assisted breeding of α-tocopherol content in maize kernels, which will then facilitate the improvement of maize as a better source of daily vitamin E nutrition

Attenuation of Relapsing Fever Neuroborreliosis in Mice by IL-17A Blockade

Relapsing fever due to Borrelia hermsiiis characterized by recurrent bacteremia episodes. However, infection of B. hermsii, if not treated early, can spread to various organs including the central nervous system (CNS). CNS disease manifestations are commonly referred to as relapsing fever neuroborreliosis (RFNB). In the mouse model of B. hermsiiinfection, we have previously shown that the development of RFNB requires innate immune cells as well as T cells. Here, we found that prior to the onset of RFNB, an increase in the systemic proinflammatory cytokine response followed by sustained levels of IP-10 concurrent with the CNS disease phase. RNA sequencing analysis of the spinal cord tissue during the disease phase revealed an association of the interleukin (IL)-17 signaling pathway in RFNB. To test a possible role for IL-17 inRFNB, we compared B. hermsii infection in wild-type and IL-17A2/2mice. Although the onset of bacteremia and protective anti-B. hermsii antibody responses occurred similarly, the blood-brain barrier permeability, proinflammatory cytokine levels, immune cell infiltration in the spinal cord, and RFNB manifestations were significantly diminished in IL-17A2/2mice compared to wild-type mice. Treatment of B. hermsii-infected wild-type mice with anti-IL-17A antibody ameliorated the severity of spinal cord inflammation, microglial cell activation, and RFNB. These data suggest that the IL-17signaling pathway plays a major role in the pathogenesis of RFNB, and IL-17A blockade may be a therapeutic modality for controlling neuroborreliosis

Genomic Analyses Reveal Mutational Signatures and Frequently Altered Genes in Esophageal Squamous Cell Carcinoma

Esophageal squamous cell carcinoma (ESCC) is one of the most common cancers worldwide and the fourth most lethal cancer in China. However, although genomic studies have identified some mutations associated with ESCC, we know little of the mutational processes responsible. To identify genome-wide mutational signatures, we performed either whole-genome sequencing (WGS) or whole-exome sequencing (WES) on 104 ESCC individuals and combined our data with those of 88 previously reported samples. An APOBEC-mediated mutational signature in 47% of 192 tumors suggests that APOBEC-catalyzed deamination provides a source of DNA damage in ESCC. Moreover, PIK3CA hotspot mutations (c.1624G>A [p.Glu542Lys] and c.1633G>A [p.Glu545Lys]) were enriched in APOBEC-signature tumors, and no smoking-associated signature was observed in ESCC. In the samples analyzed by WGS, we identified focal (<100 kb) amplifications of CBX4 and CBX8. In our combined cohort, we identified frequent inactivating mutations in AJUBA, ZNF750, and PTCH1 and the chromatin-remodeling genes CREBBP and BAP1, in addition to known mutations. Functional analyses suggest roles for several genes (CBX4, CBX8, AJUBA, and ZNF750) in ESCC. Notably, high activity of hedgehog signaling and the PI3K pathway in approximately 60% of 104 ESCC tumors indicates that therapies targeting these pathways might be particularly promising strategies for ESCC. Collectively, our data provide comprehensive insights into the mutational signatures of ESCC and identify markers for early diagnosis and potential therapeutic targets

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe

Bimetal-gradient-layer surfacing of forging die manufacturing based on cast-steel substrate

To solve problems encountered in manufacturing forging die used on large-scale hydraulic press with traditional method, such as poor forging penetration, long cycle, high cost, etc, a new method of mold making was put forward, which adopted casting steel as substrate and used two surfacing layers– the bimetal-gradient-layer(BGL)– on the working area of die cavity to make forging die. Firstly, the processes and materials were chosen according to the operating requirements of equipment and BGL surfacing samples were prepared. Then, properties analyses of samples were conducted. The application experiment was done on 50MN hydraulic press. The results showed that this method could shorten the manufacturing cycle and reduce cost apparently; properties between substrate and surfacing layers transited smoothly; the properties of die manufactured by BGL surfacing method could meet the requirements of 50 MN hydraulic press well, which justified the new method's effectiveness

Bimetal-gradient-layer surfacing of forging die manufacturing based on cast-steel substrate

To solve problems encountered in manufacturing forging die used on large-scale hydraulic press with traditional method, such as poor forging penetration, long cycle, high cost, etc, a new method of mold making was put forward, which adopted casting steel as substrate and used two surfacing layers– the bimetal-gradient-layer(BGL)– on the working area of die cavity to make forging die. Firstly, the processes and materials were chosen according to the operating requirements of equipment and BGL surfacing samples were prepared. Then, properties analyses of samples were conducted. The application experiment was done on 50MN hydraulic press. The results showed that this method could shorten the manufacturing cycle and reduce cost apparently; properties between substrate and surfacing layers transited smoothly; the properties of die manufactured by BGL surfacing method could meet the requirements of 50 MN hydraulic press well, which justified the new method's effectiveness