Brief research report: Photoplethysmography pulse sensors designed to detect human heart rates are ineffective at measuring horse heart rates

This study sought to evaluate the accuracy of a PPG (photoplethysmography) sensor designed to measure human heart rates in monitoring the distal limb pulse of healthy adult horses. We hypothesized that the PPG sensor is sensitive to placement location and orientation, and that measurement accuracies depend on placement and orientation on the limb. To evaluate this hypothesis, a completely randomized block design with a factorial treatment structure was used. Horses were considered as the block. Limb type (right front, left front, right hind, and left hind) and position of sensor (medial or lateral) were treatments, with levels arranged in a complete (4x2) factorial design. Data were collected by placing the PPG sensor on the limb of each horse (n = 6), with placement location according to the treatment (limb type and location) combination, and taking pulse readings for 60 seconds. Manual heart rates were collected concurrently using a stethoscope. Data were analyzed by calculating root mean square errors (RMSE) for the PPG measurements with the manual heart rates as a gold standard. Variation in RMSE associated with limb and location of sensor were evaluated using a general linear model with fixed effects for limb and location and a random effect for horse. Our results indicated that the PPG sensor was ineffective at measuring horse heart rates, and that the device was insensitive to placement location and orientation. Future work should focus on developing alternative analytics to interpret the data from PPG sensors to better reflect horse heart rates

Language Partners at the YWCA: UNI Spanish, English and TESOL students collaborating with English students in community ESOL classes

In 2016, a collaboration began between UNI faculty and students in service learning courses in the Department of Languages & Literatures and classes in English for speakers of other languages (ESOL) at the YWCA of Black Hawk County. Since that time, students in two Spanish courses (Latinos in the U.S. and Advanced Conversation & Reading) and one English linguistics course (Structure of English) have worked as language partners with adult learners of English in full semester and partial semester community-based learning projects over the course of five consecutive semesters (Spring 2016 to Spring 2018). Members of the L&L faculty, Elise DuBord, Jennifer Cooley and Caroline Ledeboer, have facilitated this collaboration with ESOL instructors and Multicultural Services Coordinators, Alejandra Huesca and Umaru Balde. As institutional partners, Department of Languages & Literatures and the YWCA have developed a positive and sustainable working relationship. Over one hundred UNI students have worked at the YWCA through coursework in their majors with approximately fifty community English students in this informal setting. These adult language learners come from a wide range of educational and language backgrounds, ranging from francophone and Portuguese-speaking Africa, Spanish-speaking Latin America, Serbo-Croatian Bosnia, and several language groups from Myanmar (Burma). Typical class sessions in the ESOL classes include informal English lessons on practical topics, such as food, shopping, the public library, and medical appointments, but the central components of this project are the communication skills and intercultural competency that all participants develop

Differential Regulation of Lipoprotein and Hepatitis C Virus Secretion by Rab1b

Secretory cells produce diverse cargoes, yet how they regulate concomitant secretory traffic remains insufficiently explored. Rab GTPases control intracellular vesicular transport. To map secretion pathways, we generated a library of lentivirus-expressed dominant-negative Rab mutants and used it in a large-scale screen to identify regulators of hepatic lipoprotein secretion. We identified several candidate pathways, including those mediated by Rab11 and Rab8. Surprisingly, inhibition of Rab1b, the major regulator of transport from the endoplasmic reticulum to the Golgi, differently affected the secretion of the very-low-density lipoprotein components ApoE and ApoB100, despite their final association on mature secreted lipoprotein particles. Since hepatitis C virus (HCV) incorporates ApoE and ApoB100 into its virus particle, we also investigated infectious HCV secretion and show that its regulation by Rab1b mirrors that of ApoB100. These observations reveal differential regulation of hepatocyte secretion by Rab1b and advance our understanding of lipoprotein assembly and lipoprotein and HCV secretion

The additional value of TGFβ1 and IL-7 to predict the course of prostate cancer progression

Background: Given the fact that prostate cancer incidence will increase in the coming years, new prognostic biomarkers are needed with regard to the biological aggressiveness of the prostate cancer diagnosed. Since cytokines have been associated with the biology of cancer and its prognosis, we determined whether transforming growth factor beta 1 (TGFβ1), interleukin-7 (IL-7) receptor and IL-7 levels add additional prognostic information with regard to prostate cancer

Identification of chemosensory receptor genes in Manduca sexta and knockdown by RNA interference

Insects detect environmental chemicals via a large and rapidly evolving family of chemosensory receptor proteins. Although our understanding of the molecular genetic basis for Drosophila chemoreception has increased enormously in the last decade, similar understanding in other insects remains limited. The tobacco hornworm, Manduca sexta, has long been an important model for insect chemosensation, particularly from ecological, behavioral, and physiological standpoints. It is also a major agricultural pest on solanaceous crops. However, little sequence information and lack of genetic tools has prevented molecular genetic analysis in this species. The ability to connect molecular genetic mechanisms, including potential lineage-specific changes in chemosensory genes, to ecologically relevant behaviors and specializations in M. sexta would be greatly beneficial. Here, we sequenced transcriptomes from adult and larval chemosensory tissues and identified chemosensory genes based on sequence homology. We also used dsRNA feeding as a method to induce RNA interference in larval chemosensory tissues. We report identification of new chemosensory receptor genes including 17 novel odorant receptors and one novel gustatory receptor. Further, we demonstrate that systemic RNA interference can be used in larval olfactory neurons to reduce expression of chemosensory receptor transcripts. Together, our results further the development of M. sexta as a model for functional analysis of insect chemosensation

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe

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Mode of access: Internet

Voices from Southwark: Reflections on a collaborative music teaching project in London in the age of COVID-19

Situated in the context of current examinations of inequality and underrepresentation in music education in the United Kingdom, this article offers perspectives on a community music school and outreach initiative based in Southwark, London, where King’s College London music students, mentored by an experienced local teacher, facilitate small group music-making for primary school children who would not otherwise have opportunities for collaborative performance. Due to COVID-19, the project shifted to fully online delivery, and later to a hybrid model, combining virtual and in-person interaction. Based on ethnographic research amongst pupils, parents, teaching assistants and coordinators, we invoke the collaborative ethos of the project and explore its social and affective impact on participants at a time of great challenge and change