Assessing the Sensitivity of the Non-Hydrostatic Regional Climate Model to Boundary Conditions and Convective Schemes over the Philippines

Regional climate models have been useful in climate studies and in downscaling climate projections from global climate models, especially for areas characterized by complex topography and coastline features, such as the Philippines. However, several factors may affect model skill, such as uncertainties related to the boundary conditions and model configuration. This study evaluates the performance of the non-hydrostatic regional climate model (NHRCM) over the Philippines. Present-day climate simulations at 50 km resolution are conducted using two sets of boundary conditions (ECMWF ERA-Interim and the NCEP/NCAR Reanalysis Project NNRP1), as well as two convective parameterization schemes in the model (Grell and Kain-Fritsch). Results show that the seasonal changes in the spatial distribution of temperature, rainfall, and winds over the Philippines are simulated reasonably well. NHRCM has an overall cold and dry bias over land, the degree of which depends on the boundary condition and the convective scheme used. After adjusting the simulated temperature because of the difference in topography, the temperature differs from that observed by -0.90°C to -0.42°C on average. The rainfall bias in NHRCM ranges from -62.13 % to -25.20 %. Regardless of the boundary condition, the Grell scheme results in the lowest temperature bias with high skill scores, while the Kain-Fritsch scheme gives the lowest rainfall bias with high correlation and skill scores. The boundary conditions also influence model skill, such that the model bias is lower for temperature when ERA-Interim is used, but lower for rainfall with NNRP1. NHRCM represents the seasonal cycles of temperature and rainfall for all regions, but tends to generate more occurrences of cold and dry months. Improvements in the model are still possible, but these results indicate the potential of the model to be used for providing essential information for describing historical and future changes in the Philippine climate

Wind Energy Projection for the Philippines based on Climate Change Modeling

To complement the existing method of wind energy assessment, this study presents wind energy projection by downscaling a regional climate model, RegCM3, which is also used in predicting rainfall and temperature changes, and using a conversion method using the Weibull distribution. A couple of papers which used long-term predicting models focused on two regions, China and the US High Plains, show a decrease of about 14% and 7%-17% respectively in wind power density due to global warming over the next century. This paper focuses on a smaller grid size of 10 km x 10 km to concentrate on a specific wind farm in Pililla, Rizal, Philippines which is considered as a commercially feasible site by wind developers. Wind energy projection that considers the effects of climate change for the expected period of operation of 25 years is used because this gives wind developers an outlook on the power production during the wind farm\u27s lifetime and would contribute in determining the wind farm\u27s potential for financial returns. Percentage difference of wind power density between the baseline period of 2008-2012 and five-year projection periods from 2013-2037 are presented. Contrary to the results of studies in China and western US, the results of this research show that there is an average five-year period increase of 6% in wind power density in Pililla, Rizal over the next 25 years

An introduction to Graph Data Management

A graph database is a database where the data structures for the schema and/or instances are modeled as a (labeled)(directed) graph or generalizations of it, and where querying is expressed by graph-oriented operations and type constructors. In this article we present the basic notions of graph databases, give an historical overview of its main development, and study the main current systems that implement them

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe

Notes for genera: basal clades of Fungi (including Aphelidiomycota, Basidiobolomycota, Blastocladiomycota, Calcarisporiellomycota, Caulochytriomycota, Chytridiomycota, Entomophthoromycota, Glomeromycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota, Mucoromycota, Neocallimastigomycota, Olpidiomycota, Rozellomycota and Zoopagomycota)

Compared to the higher fungi (Dikarya), taxonomic and evolutionary studies on the basal clades of fungi are fewer in number. Thus, the generic boundaries and higher ranks in the basal clades of fungi are poorly known. Recent DNA based taxonomic studies have provided reliable and accurate information. It is therefore necessary to compile all available information since basal clades genera lack updated checklists or outlines. Recently, Tedersoo et al. (MycoKeys 13:1--20, 2016) accepted Aphelidiomycota and Rozellomycota in Fungal clade. Thus, we regard both these phyla as members in Kingdom Fungi. We accept 16 phyla in basal clades viz. Aphelidiomycota, Basidiobolomycota, Blastocladiomycota, Calcarisporiellomycota, Caulochytriomycota, Chytridiomycota, Entomophthoromycota, Glomeromycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota, Mucoromycota, Neocallimastigomycota, Olpidiomycota, Rozellomycota and Zoopagomycota. Thus, 611 genera in 153 families, 43 orders and 18 classes are provided with details of classification, synonyms, life modes, distribution, recent literature and genomic data. Moreover, Catenariaceae Couch is proposed to be conserved, Cladochytriales Mozl.-Standr. is emended and the family Nephridiophagaceae is introduced

Mortality from gastrointestinal congenital anomalies at 264 hospitals in 74 low-income, middle-income, and high-income countries: a multicentre, international, prospective cohort study

Summary Background Congenital anomalies are the fifth leading cause of mortality in children younger than 5 years globally. Many gastrointestinal congenital anomalies are fatal without timely access to neonatal surgical care, but few studies have been done on these conditions in low-income and middle-income countries (LMICs). We compared outcomes of the seven most common gastrointestinal congenital anomalies in low-income, middle-income, and high-income countries globally, and identified factors associated with mortality. Methods We did a multicentre, international prospective cohort study of patients younger than 16 years, presenting to hospital for the first time with oesophageal atresia, congenital diaphragmatic hernia, intestinal atresia, gastroschisis, exomphalos, anorectal malformation, and Hirschsprung’s disease. Recruitment was of consecutive patients for a minimum of 1 month between October, 2018, and April, 2019. We collected data on patient demographics, clinical status, interventions, and outcomes using the REDCap platform. Patients were followed up for 30 days after primary intervention, or 30 days after admission if they did not receive an intervention. The primary outcome was all-cause, in-hospital mortality for all conditions combined and each condition individually, stratified by country income status. We did a complete case analysis. Findings We included 3849 patients with 3975 study conditions (560 with oesophageal atresia, 448 with congenital diaphragmatic hernia, 681 with intestinal atresia, 453 with gastroschisis, 325 with exomphalos, 991 with anorectal malformation, and 517 with Hirschsprung’s disease) from 264 hospitals (89 in high-income countries, 166 in middleincome countries, and nine in low-income countries) in 74 countries. Of the 3849 patients, 2231 (58·0%) were male. Median gestational age at birth was 38 weeks (IQR 36–39) and median bodyweight at presentation was 2·8 kg (2·3–3·3). Mortality among all patients was 37 (39·8%) of 93 in low-income countries, 583 (20·4%) of 2860 in middle-income countries, and 50 (5·6%) of 896 in high-income countries (p<0·0001 between all country income groups). Gastroschisis had the greatest difference in mortality between country income strata (nine [90·0%] of ten in lowincome countries, 97 [31·9%] of 304 in middle-income countries, and two [1·4%] of 139 in high-income countries; p≤0·0001 between all country income groups). Factors significantly associated with higher mortality for all patients combined included country income status (low-income vs high-income countries, risk ratio 2·78 [95% CI 1·88–4·11], p<0·0001; middle-income vs high-income countries, 2·11 [1·59–2·79], p<0·0001), sepsis at presentation (1·20 [1·04–1·40], p=0·016), higher American Society of Anesthesiologists (ASA) score at primary intervention (ASA 4–5 vs ASA 1–2, 1·82 [1·40–2·35], p<0·0001; ASA 3 vs ASA 1–2, 1·58, [1·30–1·92], p<0·0001]), surgical safety checklist not used (1·39 [1·02–1·90], p=0·035), and ventilation or parenteral nutrition unavailable when needed (ventilation 1·96, [1·41–2·71], p=0·0001; parenteral nutrition 1·35, [1·05–1·74], p=0·018). Administration of parenteral nutrition (0·61, [0·47–0·79], p=0·0002) and use of a peripherally inserted central catheter (0·65 [0·50–0·86], p=0·0024) or percutaneous central line (0·69 [0·48–1·00], p=0·049) were associated with lower mortality. Interpretation Unacceptable differences in mortality exist for gastrointestinal congenital anomalies between lowincome, middle-income, and high-income countries. Improving access to quality neonatal surgical care in LMICs will be vital to achieve Sustainable Development Goal 3.2 of ending preventable deaths in neonates and children younger than 5 years by 2030

WRF simulation of the heavy rainfall over Metropolitan Manila, Philippines during tropical cyclone Ketsana: a sensitivity study

In September 2009, tropical cyclone Ketsana brought record rainfall over Metropolitan Manila, Philippines, resulting in widespread flooding and incapacitated the city for days. The extensive damage caused by heavy rainfall events such as this highlights the need to have an effective weather prediction model to forecast these extreme events for the Philippines. As an initial step towards this goal, this study aims to examine the sensitivity of the rainfall simulation of the Weather Research and Forecasting (WRF) model to the physical parameterization schemes related to the planetary boundary layer (PBL) and microphysics processes. Comparison with observation data shows that the PBL scheme influences the spatial distribution of rainfall, whereas the microphysics scheme can affect rainfall magnitudes. The PBL scheme can also affect the intensity and track of the tropical cyclone as indicated in the surface latent heat flux and vertical velocity, as well as the magnitude of the mixing ratio of the different hydrometeors, which consequently affects the simulated rainfall. On the other hand, microphysics schemes can also influence the vertical distribution of each hydrometeor, likely due to differences in the treatment of ice phase processes and its interaction with the PBL scheme. Among the schemes tested, the model simulation using the ACM2 PBL and the WSM6 microphysics schemes captures this particular heavy rainfall event, in terms of spatial distribution, amount and timing. The results of this study show the importance of the PBL and microphysics schemes in simulating heavy rainfall, as well as the high potential of using WRF for future forecasts, especially for extreme weather events in the Philippines

The effect of tropical cyclone in the southwest monsoon rainfall in the Philippines using climatological analysis

The data for this study is obtained from nine meteorological station of PAG ASA for the months of June to September from 1961 to 2010.To observe the effect of typhoon in SW1,1 rainfall in the Philippi11es, this study uses the data of JTWC with the same date to detect the data set for typhoo11 days and without typhoon days. The two data sets are being analyzed by ti1ne series of accumulated rainfall, s01.1thwest monsoon rainfall anon1aly index 11umber of years to detect a specific trend and extreme events. This study will explain the behavior of rainfall in the near future