Développement d'un modèle de transferts couplés pour l'aide à la conception et à la conduite des systèmes de purification du sodium des réacteurs à neutrons rapides

Les pièges froids sont des systèmes de purification du fluide caloporteur sodium indispensables au bon fonctionnement des réacteurs à neutrons rapides. Ils permettent de contrôler la teneur en impuretés du sodium, notamment celles de l oxygène et de l hydrogène. Le piégeage de ces impuretés est basé sur leur cristallisation sous forme d oxyde et d hydrure de sodium, sur garnissage et sur parois froides. Appréhender le remplissage de ces systèmes de purification permettra d orienter les choix technologiques en termes de conception et de conduite. L objectif est de développer un outil d aide à la conception et à la simulation des pièges froids. Le modèle de cristallisation intègre le couplage des différents phénomènes mis en jeu lors de la purification du sodium, à savoir l hydrodynamique, transfert thermique et transfert de matière.Operating a Sodium Fast Reactor (SFR) in reliable and safe conditions requires to master the quality of the sodium fluid coolant, regarding oxygen and hydrogen impurities contents. A cold trap is a purification unit in SFR, designed for maintaining oxygen and hydrogen contents within acceptable limits. The purification of these impurities is based on crystallization of sodium hydride on cold walls and sodium oxide or hydride on wire mesh packing. Indeed, as oxygen and hydrogen solubilities are nearly nil at temperatures close to the sodium fusion point, i.e. 97.8C, on line sodium purification can be performed by crystallization of sodium oxide and hydride from liquid sodium flows. However, the management of cold trap performances is necessary to prevent from unforeseen maintenance operations, which could induce shut-down of the reactor. It is thus essential to understand how a cold trap fills up with impurities crystallization in order to optimize the design of this system and to overcome any problems during nominal operation. The objective is to develop a design and simulation tool for cold traps able to predict the location and the amount of the impurities deposited. Crystallization model involve phenomena coupling in a porous medium with hydrodynamics, heat and mass transfer, distinguishing nucleation and growth phases for each impurity. It enables to understand how thermo hydraulic conditions and growing impurities interact on each other. This analysis will adapt operating and management conditions in order to optimize purification requirements.TOULOUSE-INP (315552154) / SudocSudocFranceF

PULSE: The Palomar Ultraviolet Laser for the Study of Exoplanets

The Palomar Ultraviolet Laser for the Study of Exoplanets (PULSE) will dramatically expand the science reach of PALM-3000, the facility high-contrast extreme adaptive optics system on the 5-meter Hale Telescope. By using an ultraviolet laser to measure the dominant high spatial and temporal order turbulence near the telescope aperture, one can increase the limiting natural guide star magnitude for exquisite correction from mV < 10 to mV < 16. Providing the highest near-infrared Strehl ratios from any large telescope laser adaptive optics system, PULSE uniquely enables spectroscopy of low-mass and more distant young exoplanet systems, essential to formulating a complete picture of exoplanet populations.Comment: 15 pages, 7 figures and 2 table

Automatic morphologic analysis of quasi-periodic masonry walls from LiDAR

This article presents a novel segmentation algorithm that allows the automatic segmentation of masonry blocks from a 3D point cloud acquired with LiDAR technology, for both stationary and mobile devices. The point cloud segmentation algorithm is based on a 2.5D approach that creates images based on the intensity attribute of LiDAR systems. Image processing algorithms based on an improvement of the marked-controlled watershed was successfully used to produce the automatic segmentation of the point cloud in the 3D space isolating each individual stone block. Finally, morphologic analysis in two case studies has been carried out. The morphologic analysis provides information about the assemblage of masonry pieces which is valuable for the structural evaluation of masonry buildings.This work has been partially supported by the Spanish Ministry of Economy and Competitiveness (Ref.: TIN201346801-C4-4-R) and by Xunta de Galicia (Grant No. CN2012/269 and Grant No. EM2013/005). Authors want to give thanks to the reviewers for their constructive comments that contributed to improve both the method and the presentation of results

MetaPalette: a k-mer Painting Approach for Metagenomic Taxonomic Profiling and Quantification of Novel Strain Variation

Metagenomic profiling is challenging in part because of the highly uneven sampling of the tree of life by genome sequencing projects and the limitations imposed by performing phylogenetic inference at fixed taxonomic ranks. We present the algorithm MetaPalette, which uses long k-mer sizes (k = 30, 50) to fit a k-mer “palette” of a given sample to the k-mer palette of reference organisms. By modeling the k-mer palettes of unknown organisms, the method also gives an indication of the presence, abundance, and evolutionary relatedness of novel organisms present in the sample. The method returns a traditional, fixed-rank taxonomic profile which is shown on independently simulated data to be one of the most accurate to date. Tree figures are also returned that quantify the relatedness of novel organisms to reference sequences, and the accuracy of such figures is demonstrated on simulated spike-ins and a metagenomic soil sample. The software implementing MetaPalette is available at: https://github.com/dkoslicki/MetaPalette. Pretrained databases are included for Archaea, Bacteria, Eukaryota, and viruses

FGF receptor genes and breast cancer susceptibility: results from the Breast Cancer Association Consortium

Background:Breast cancer is one of the most common malignancies in women. Genome-wide association studies have identified FGFR2 as a breast cancer susceptibility gene. Common variation in other fibroblast growth factor (FGF) receptors might also modify risk. We tested this hypothesis by studying genotyped single-nucleotide polymorphisms (SNPs) and imputed SNPs in FGFR1, FGFR3, FGFR4 and FGFRL1 in the Breast Cancer Association Consortium. Methods:Data were combined from 49 studies, including 53 835 cases and 50 156 controls, of which 89 050 (46 450 cases and 42 600 controls) were of European ancestry, 12 893 (6269 cases and 6624 controls) of Asian and 2048 (1116 cases and 932 controls) of African ancestry. Associations with risk of breast cancer, overall and by disease sub-type, were assessed using unconditional logistic regression. Results:Little evidence of association with breast cancer risk was observed for SNPs in the FGF receptor genes. The strongest evidence in European women was for rs743682 in FGFR3; the estimated per-allele odds ratio was 1.05 (95 confidence interval=1.02-1.09, P=0.0020), which is substantially lower than that observed for SNPs in FGFR2. Conclusion:Our results suggest that common variants in the other FGF receptors are not associated with risk of breast cancer to the degree observed for FGFR2. © 2014 Cancer Research UK

Molecular excitation in the Interstellar Medium: recent advances in collisional, radiative and chemical processes

We review the different excitation processes in the interstellar mediumComment: Accepted in Chem. Re

Ancient DNA analysis identifies marine mollusc shells as new metagenomic archives of the past.

This is the author accepted manuscript. The final version is available from Wiley via the DOI in this record.Marine mollusc shells enclose a wealth of information on coastal organisms and their environment. Their life history traits as well as (palaeo-) environmental conditions, including temperature, food availability, salinity and pollution, can be traced through the analysis of their shell (micro-) structure and biogeochemical composition. Adding to this list, the DNA entrapped in shell carbonate biominerals potentially offers a novel and complementary proxy both for reconstructing palaeoenvironments and tracking mollusc evolutionary trajectories. Here, we assess this potential by applying DNA extraction, high-throughput shotgun DNA sequencing and metagenomic analyses to marine mollusc shells spanning the last ~7,000 years. We report successful DNA extraction from shells, including a variety of ancient specimens, and find that DNA recovery is highly dependent on their biomineral structure, carbonate layer preservation and disease state. We demonstrate positive taxonomic identification of mollusc species using a combination of mitochondrial DNA genomes, barcodes, genome-scale data and metagenomic approaches. We also find shell biominerals to contain a diversity of microbial DNA from the marine environment. Finally, we reconstruct genomic sequences of organisms closely related to the Vibrio tapetis bacteria from Manila clam shells previously diagnosed with Brown Ring Disease. Our results reveal marine mollusc shells as novel genetic archives of the past, which opens new perspectives in ancient DNA research, with the potential to reconstruct the evolutionary history of molluscs, microbial communities and pathogens in the face of environmental changes. Other future applications include conservation of endangered mollusc species and aquaculture management.We thank Tom Schiøtte and Martin Vinther Sørensen at the Zoological Museum of Copenhagen for providing historical shell samples from the Invertebrate Collection. We thank Adeline Bidault for Vibrio DNA extraction, Kristian Hanghøj for technical assistance, Mikkel Schubert and Gabriel Renaud for fruitful discussions, the PALEOMIX group and the staff of the Danish National High-Throughput DNA Sequencing Centre for support. This work was supported by the Danish Council for Independent Research, Natural Sciences (FNU, 4002-00152B); the Danish National Research Foundation (DNRF94); the EPT PROXACHEOBIO from Université Européenne de Bretagne (2010–2012); the APEGE initiative PaleoCOO of the Centre National de la Recherche Scientifique; the cluster of excellence LabexMER (ANR-10-LABX-19; METHOMOL) under the program “Investissements d'Avenir”; the UK Natural Environment Research Council (NE/H023356/1); the EU Marie Curie ARAMACC Initial Training Network (FP7-PEOPLE-2013-ITN 604802); the “Chaires d'Attractivité 2014” IDEX, University of Toulouse, France (OURASI)

Coordinated generation of multiple ocular-like cell lineages and fabrication of functional corneal epithelial cell sheets from human iPS cells

We describe a protocol for the generation of a functional and transplantable corneal epithelium derived from human induced pluripotent stem (iPS) cells. When this protocol is followed, a proportion of iPS cells spontaneously form circular colonies, each of which is composed of four concentric zones. Cells in these zones have different morphologies and immunostaining characteristics, resembling neuroectoderm, neural crest, ocular-surface ectoderm, or surface ectoderm. We have named this 2D colony a 'SEAM' (self-formed ectodermal autonomous multizone), and previously demonstrated that cells within the SEAM have the potential to give rise to anlages of different ocular lineages, including retinal cells, lens cells, and ocular-surface ectoderm. To investigate the translational potential of the SEAM, cells within it that resemble ocular-surface epithelia can be isolated by pipetting and FACS sorting into a population of corneal epithelial-like progenitor cells. These can be expanded and differentiated to form an epithelial layer expressing K12 and PAX6, and able to recover function in an animal model of corneal epithelial dysfunction after surgical transplantation. The whole protocol, encompassing human iPS cell preparation, autonomous differentiation, purification, and subsequent differentiation, takes between 100 and 120 d, and is of potential use to researchers with an interest in eye development and/or ocular-surface regeneration. Experience with human iPS cell culture and sorting via FACS will be of benefit for researchers performing this protocol

Measurement of the cross-section and charge asymmetry of WW bosons produced in proton-proton collisions at s=8\sqrt{s}=8 TeV with the ATLAS detector

This paper presents measurements of the $W^+ \rightarrow \mu^+\nu$ and $W^- \rightarrow \mu^-\nu$ cross-sections and the associated charge asymmetry as a function of the absolute pseudorapidity of the decay muon. The data were collected in proton--proton collisions at a centre-of-mass energy of 8 TeV with the ATLAS experiment at the LHC and correspond to a total integrated luminosity of 20.2~\mbox{fb^{-1}}. The precision of the cross-section measurements varies between 0.8% to 1.5% as a function of the pseudorapidity, excluding the 1.9% uncertainty on the integrated luminosity. The charge asymmetry is measured with an uncertainty between 0.002 and 0.003. The results are compared with predictions based on next-to-next-to-leading-order calculations with various parton distribution functions and have the sensitivity to discriminate between them.Comment: 38 pages in total, author list starting page 22, 5 figures, 4 tables, submitted to EPJC. All figures including auxiliary figures are available at https://atlas.web.cern.ch/Atlas/GROUPS/PHYSICS/PAPERS/STDM-2017-13