117 research outputs found
New algorithm improves fine structure of the barley consensus SNP map
- Author
- Publication venue
- BioMed Central
- Publication date
- 01/01/2011
- Field of study
<p>Abstract</p> <p>Background</p> <p>The need to integrate information from multiple linkage maps is a long-standing problem in genetics. One way to visualize the complex ordinal relationships is with a directed graph, where each vertex in the graph is a bin of markers. When there are no ordering conflicts between the linkage maps, the result is a directed acyclic graph, or DAG, which can then be linearized to produce a consensus map.</p> <p>Results</p> <p>New algorithms for the simplification and linearization of consensus graphs have been implemented as a package for the R computing environment called DAGGER. The simplified consensus graphs produced by DAGGER exactly capture the ordinal relationships present in a series of linkage maps. Using either linear or quadratic programming, DAGGER generates a consensus map with minimum error relative to the linkage maps while remaining ordinally consistent with them. Both linearization methods produce consensus maps that are compressed relative to the mean of the linkage maps. After rescaling, however, the consensus maps had higher accuracy (and higher marker density) than the individual linkage maps in genetic simulations. When applied to four barley linkage maps genotyped at nearly 3000 SNP markers, DAGGER produced a consensus map with improved fine structure compared to the existing barley consensus SNP map. The root-mean-squared error between the linkage maps and the DAGGER map was 0.82 cM per marker interval compared to 2.28 cM for the existing consensus map. Examination of the barley hardness locus at the 5HS telomere, for which there is a physical map, confirmed that the DAGGER output was more accurate for fine structure analysis.</p> <p>Conclusions</p> <p>The R package DAGGER is an effective, freely available resource for integrating the information from a set of consistent linkage maps.</p
Uncovering Genes with Divergent mRNA-Protein Dynamics in Streptomyces coelicolor
- Author
- A Mogk
- AJ Martin-Galiano
- AR Hesketh
- B Futcher
- B Price
- D Greenbaum
- David H. Sherman
- E Takano
- G Lithwick
- G Wu
- GL Challis
- IV Shilov
- J Huang
- J Vohradsky
- JA Bernstein
- Juan Valcarcel
- Karthik P. Jayapal
- L Nie
- M Kanehisa
- Miranda G. S. Yap
- MP Molloy
- MP Washburn
- MW Schmidt
- P Lu
- PK Chong
- PL Ross
- R Jansen
- Robin J. Philp
- S Charaniya
- S Mehra
- SD Bentley
- SP Gygi
- T Ideker
- T Kieser
- Timothy J. Griffin
- TJ Griffin
- V de Crecy-Lagard
- W Li
- Wei-Shou Hu
- WR Strohl
- Y Ishihama
- Yee-Jiun Kok
- Publication venue
- Public Library of Science
- Publication date
- 01/05/2008
- Field of study
Many biological processes are intrinsically dynamic, incurring profound changes at both molecular and physiological levels. Systems analyses of such processes incorporating large-scale transcriptome or proteome profiling can be quite revealing. Although consistency between mRNA and proteins is often implicitly assumed in many studies, examples of divergent trends are frequently observed. Here, we present a comparative transcriptome and proteome analysis of growth and stationary phase adaptation in Streptomyces coelicolor, taking the time-dynamics of process into consideration. These processes are of immense interest in microbiology as they pertain to the physiological transformations eliciting biosynthesis of many naturally occurring therapeutic agents. A shotgun proteomics approach based on mass spectrometric analysis of isobaric stable isotope labeled peptides (iTRAQ™) enabled identification and rapid quantification of approximately 14% of the theoretical proteome of S. coelicolor. Independent principal component analyses of this and DNA microarray-derived transcriptome data revealed that the prominent patterns in both protein and mRNA domains are surprisingly well correlated. Despite this overall correlation, by employing a systematic concordance analysis, we estimated that over 30% of the analyzed genes likely exhibited significantly divergent patterns, of which nearly one-third displayed even opposing trends. Integrating this data with biological information, we discovered that certain groups of functionally related genes exhibit mRNA-protein discordance in a similar fashion. Our observations suggest that differences between mRNA and protein synthesis/degradation mechanisms are prominent in microbes while reaffirming the plausibility of such mechanisms acting in a concerted fashion at a protein complex or sub-pathway level
Loss of Cofilin 1 Disturbs Actin Dynamics, Adhesion between Enveloping and Deep Cell Layers and Cell Movements during Gastrulation in Zebrafish
- Author
- A Amsterdam
- A McGough
- AI Ivanov
- AS Yap
- BM Gumbiner
- BR McCullough
- Bruce Riley
- BT Chua
- BW Bernstein
- C Chan
- C Wang
- CB Kimmel
- Chun-Wei Lin
- D Pavlov
- D Yu
- D Yu
- DA Kane
- DG Drubin
- DS Sepich
- E Andrianantoandro
- F Huber
- F Klamt
- G Mouneimne
- Hui-Ting Chang
- IV Dedova
- J Topczewski
- JA Montero
- JA Theriot
- JA Theriot
- JV Small
- K Ohashi
- K Tanaka
- KN McFarland
- KR Gee
- L Han
- L Solnica-Krezel
- M Koppen
- M Lachnit
- M Roh-Johnson
- M Sawa
- M Van Troys
- M Van Troys
- M Westerfield
- MD Welch
- ME Robu
- MF Carlier
- N Lehman
- N Watanabe
- P Lappalainen
- RM Warga
- SE Zalik
- SG Babb
- Shiang-Jiuun Chen
- Shih-Lei Lai
- Shuo-Ting Yen
- Shyh-Jye Lee
- SL Lai
- SL Lai
- T Shimizu
- T Sumi
- Tun-Hao Chan
- TY Huang
- WE Hable
- Wen-Lian Liao
- Yi-Ching Liu
- Publication venue
- Public Library of Science
- Publication date
- 01/01/2010
- Field of study
During gastrulation, cohesive migration drives associated cell layers to the completion of epiboly in zebrafish. The association of different layers relies on E-cadherin based cellular junctions, whose stability can be affected by actin turnover. Here, we examined the effect of malfunctioning actin turnover on the epibolic movement by knocking down an actin depolymerizing factor, cofilin 1, using antisense morpholino oligos (MO). Knockdown of cfl1 interfered with epibolic movement of deep cell layer (DEL) but not in the enveloping layer (EVL) and the defect could be specifically rescued by overexpression of cfl1. It appeared that the uncoordinated movements of DEL and EVL were regulated by the differential expression of cfl1 in the DEL, but not EVL as shown by in situ hybridization. The dissociation of DEL and EVL was further evident by the loss of adhesion between layers by using transmission electronic and confocal microscopy analyses. cfl1 morphants also exhibited abnormal convergent extension, cellular migration and actin filaments, but not involution of hypoblast. The cfl1 MO-induced cell migration defect was found to be cell-autonomous in cell transplantation assays. These results suggest that proper actin turnover mediated by Cfl1 is essential for adhesion between DEL and EVL and cell movements during gastrulation in zebrafish
Saturation of an Intra-Gene Pool Linkage Map: Towards a Unified Consensus Linkage Map for Fine Mapping and Synteny Analysis in Common Bean
- Author
- A Frei
- Andrea C. Fernandez
- B Collard
- BK Hougaard
- BN Jackson
- Carlos H. Galeano
- CE Vallejos
- CH Galeano
- CH Galeano
- CL Marino
- E Gáitan-Solis
- E Lander
- E Mace
- E Mace
- ET Caixeta
- GC Buso
- GV Caldas
- H Cuevas
- H Liao
- HD Lopez-Marin
- Hyten
- IV Yap
- J Gustafson
- J Salse
- J Schmutz
- J Tohme
- J Wang
- J-M Lacape
- JM Córdoba
- JM Córdoba
- JM Guerra-Sanz
- Jos Vanderleyden
- KA Cichy
- Karen A. Cichy
- L Hanai
- M Blair
- M Blair
- M Blair
- M Blair
- M Krzywinski
- M McConnell
- M Spiller
- Matthew W. Blair
- MCM Grisi
- MJ Bassett
- MW Blair
- MW Blair
- MWF Yaish
- Natalia Franco-Herrera
- P Gepts
- P McClean
- P Stam
- Phillip E. McClean
- R Freyre
- R Remans
- RE Voorrips
- RO Nodari
- S Vezzulli
- SB Cannon
- SE Beebe
- T Close
- T de Campos
- Tongming Yin
- UM Quraishi
- W Muchero
- W Muchero
- WD Beavis
- Y Wu
- Publication venue
- Public Library of Science
- Publication date
- 08/12/2011
- Field of study
Map-based cloning and fine mapping to find genes of interest and marker assisted selection (MAS) requires good genetic maps with reproducible markers. In this study, we saturated the linkage map of the intra-gene pool population of common bean DOR364×BAT477 (DB) by evaluating 2,706 molecular markers including SSR, SNP, and gene-based markers. On average the polymorphism rate was 7.7% due to the narrow genetic base between the parents. The DB linkage map consisted of 291 markers with a total map length of 1,788 cM. A consensus map was built using the core mapping populations derived from inter-gene pool crosses: DOR364×G19833 (DG) and BAT93×JALO EEP558 (BJ). The consensus map consisted of a total of 1,010 markers mapped, with a total map length of 2,041 cM across 11 linkage groups. On average, each linkage group on the consensus map contained 91 markers of which 83% were single copy markers. Finally, a synteny analysis was carried out using our highly saturated consensus maps compared with the soybean pseudo-chromosome assembly. A total of 772 marker sequences were compared with the soybean genome. A total of 44 syntenic blocks were identified. The linkage group Pv6 presented the most diverse pattern of synteny with seven syntenic blocks, and Pv9 showed the most consistent relations with soybean with just two syntenic blocks. Additionally, a co-linear analysis using common bean transcript map information against soybean coding sequences (CDS) revealed the relationship with 787 soybean genes. The common bean consensus map has allowed us to map a larger number of markers, to obtain a more complete coverage of the common bean genome. Our results, combined with synteny relationships provide tools to increase marker density in selected genomic regions to identify closely linked polymorphic markers for indirect selection, fine mapping or for positional cloning
Multi-messenger observations of a binary neutron star merger
- Author
- Aab A
- Aartsen MG
- Abbott BP
- Abbott R
- Abbott TD
- Abbott TMC
- Abdalla H
- Abe F
- Abeysekara AU
- Abramo LR
- Abramowski A
- Abreu P
- Acernese F
- Acero F
- Ackermann M
- Ackley K
- Ackley K
- Adams C
- Adams J
- Adams SM
- Adams T
- Addesso P
- Adhikari RX
- Adya VB
- Affeldt C
- Afrough M
- Agarwal B
- Agathos M
- Agatsuma K
- Aggarwal N
- Aglietta M
- Agliozzo C
- Agudo I
- Aguiar OD
- Aguilar JA
- Aharonian F
- Ahlers M
- Ahrens M
- Aiello L
- Ain A
- Ajith P
- Akras S
- Al Samarai I
- Albert A
- Albert A
- Albuquerque IFM
- Albury JM
- Alcaniz JS
- Alexander KD
- Alfaro R
- Alighieri S Di Serego
- Allam S
- Allekotte I
- Allen B
- Allen G
- Allison J
- Allison JR
- Allocca A
- Almela A
- Altin PA
- Altmann D
- Alvarez C
- Alvarez JD
- Alvarez M Dovale
- Alvarez-Muiz J
- Amati L
- Amato A
- An T
- Ananyeva A
- Anastasi GA
- Anchordoqui L
- Andeen K
- Anderson JP
- Anderson SB
- Anderson T
- Anderson WG
- Andrada B
- Andre M
- Andreoni I
- Andreoni I
- Andringa S
- Angelova SV
- Anghinolfi M
- Angner EO
- Angus CR
- Annis J
- Ansseau I
- Antier S
- Anton G
- Antonelli LA
- Antonelli LA
- Anupama GC
- Aoki K
- Aoki W
- Appert S
- Aptekar RL
- Arai K
- Arakawa M
- Aramo C
- Araya MC
- Arcavi I
- Arceo R
- Ardid M
- Areeda JS
- Aresu G
- Argan A
- Argelles C
- Arnaud N
- Array LWA Long Wavelength
- Array MWA Murchison Widefield
- Arrieta M
- Arsene N
- Arteaga-Velzquez JC
- Artola R
- Arun KG
- Asakura Y
- Asaoka Y
- Ascenzi S
- Ashall C
- Ashley MCB
- Ashton G
- Asorey H
- Assis P
- Ast M
- Aston SM
- Astone P
- Atallah DV
- ATLAS
- Atwood WB
- Aubert J-J
- Aubert P
- Aublin J
- Auffenberg J
- Aufmuth P
- Aulbert C
- AultONeal K
- Austin C
- Avgitas T
- Avila G
- Avila-Alvarez A
- Awad A Kuotb
- Axani S
- Baar S
- Babak S
- Bachetti M
- Backes M
- Bacon P
- Bader MKM
- Badescu AM
- Bae S
- Bagherpour H
- Bai X
- Bailes M
- Baker PT
- Balaceanu A
- Balanutsa PV
- Balasubramanian A
- Balbinot E
- Baldaccini F
- Baldini L
- Ballardin G
- Ballmer SW
- Bally J
- Balzer A
- Banagiri S
- Banerji M
- Bannister KW
- Barayoga JC
- Barbarino C
- Barbato F
- Barber AS
- Barbiellini G
- Barbiellini G
- Barclay SE
- Baret B
- Barish BC
- Barker D
- Barkett K
- Barnard M
- Barnes J
- Barone F
- Barr B
- Barrios-Marti J
- Barron JP
- Barsotti L
- Barsuglia M
- Barta D
- Barthelmy SD
- Bartlett J
- Bartos I
- Barway S
- Barway S
- Barwick SW
- Basa S
- Bassiri R
- Basti A
- Bastieri D
- Batch JC
- Bauer FE
- Bauer FE
- Baum V
- Bawaj M
- Bay R
- Bayley JC
- Bazzan M
- Bazzano A
- Bchele M
- Beardmore AP
- Beardsley A
- Beatty JJ
- Becerril A
- Becherini Y
- Bechtol K
- Becker KH
- Becsy B
- Beer C
- Bejger M
- Belahcene I
- Belhorma B
- Bell AS
- Bellazzini R
- Bellido JA
- Bellm E
- Belmont-Moreno E
- Benetti S
- Benkhali F Ait
- Benoit-Levy A
- BenZvi SY
- Berat C
- Berenji B
- Berge D
- Berger BK
- Berger E
- Bergmann G
- Berisso M Gomez
- Berley D
- Bernal A
- Bernardini E
- Bernardini MG
- Bernhard S
- Bernrhr K
- Bero JJ
- Beroiz M
- Berry CPL
- Bersanetti D
- Bertaina ME
- Bertin E
- Bertin V
- Bertolini A
- Berton M
- Bertou X
- Bessell MS
- Besson DZ
- Beswick R
- Betzwieser J
- Bhagwat S
- Bhalerao V
- Bhandare R
- Bhattacharya D
- Biagi S
- Biermann PL
- Bilenko IA
- Billingsley G
- Billman CR
- Binder G
- Bindig D
- Birch J
- Birney R
- Birnholtz O
- Biscans S
- Biscoveanu S
- Bisht A
- Bissaldi E
- Bissaldi E
- Biteau J
- Bitossi M
- Biwer C
- Bizouard MA
- Blackburn JK
- Blackburn L
- Blackman J
- Blackwell R
- Blaess SG
- Blagorodnova N
- Blair CD
- Blair DG
- Blair RM
- Blanchard P
- Blanco A
- Bland PA
- Blandford RD
- Blaufuss E
- Blazek J
- Bleve C
- Bloemen S
- Bloom ED
- Blot S
- Bock O
- Bode N
- Boer M
- Bogaert G
- Bohacova M
- Bohe A
- Bohm C
- Boisson C
- Bolmont J
- Bond IA
- Bondu F
- Bonifazi C
- Bonilla E
- Bonino R
- Bonnand R
- Bonnefoy S
- Bonoli S
- Booler T
- Boom BA
- Bordas P
- Bork R
- Bormuth R
- Borner M
- Borodai N
- Bos F
- Boschi V
- Bose D
- Bose S
- Boser S
- Bossie K
- Botner O
- Bottacini E
- Bottcher M
- Botti AM
- Botticella MT
- Bouffanais Y
- Bourbeau E
- Bourbeau J
- Bourret S
- Bouwhuis MC
- Bozzi A
- Bozzo E
- Brack J
- Bradaschia C
- Bradascio F
- Brady PR
- Branchesi M
- Brancus I
- Brandt S
- Brau JE
- Braun J
- Braun J
- Bravo O Martinez
- Brayeur L
- Breeveld AA
- Bregeon J
- Bregeon J
- Brenzke M
- Bretz H-P
- Bretz T
- Briant T
- Bridgeman A
- Briechle FL
- Briggs MS
- Brillet A
- Brinkmann M
- Brisbois C
- Brisson V
- Brnzas H
- Brocato E
- Brockill P
- Broderick JW
- Broida JE
- Bron S
- Brooks AF
- Brooks D
- Brostean-Kaiser J
- Brout D
- Brown DA
- Brown DD
- Brown IS
- Bruijn R
- Brun F
- Brun P
- Brunett S
- Brunner J
- Bruun SH
- Bryan M
- Buchanan CC
- Buchholz P
- Buckley DAH
- Buckley-Geer E
- Budnev NM
- Buehler R
- Bueno A
- Bufano F
- Buffa F
- Buikema A
- Buitink S
- Bulgarelli A
- Bulger J
- Bulik T
- Bulik T
- Bulla M
- Bulten HJ
- Buonanno A
- Burgay M
- Burgess JM
- Burgman A
- Burhonov O
- Burke DL
- Burns E
- Burrows DN
- Buscemi M
- Buskulic D
- Buson S
- Bustillo J Caldern
- Busto J
- Butler NR
- Butler RE
- Buttu M
- Buy C
- Byer RL
- Caballero-Garcia MD
- Caballero-Mora KS
- Caballero-Mora KS
- Cabero M
- Cabral J
- Caccianiga L
- Cadonati L
- Cagnoli G
- Cahillane C
- Callister TA
- Calloni E
- CALTECH GROWTH JAGWAR
- Cameron RA
- Camilo F
- Camp JB
- Campana S
- Camuccio R
- Cancio A
- Canepa M
- Canfora F
- Canizares P
- Cannella C
- Cannizzaro G
- Cannon KC
- Cano Z
- Cao H
- Cao J
- Cao XL
- Capaccioli M
- Capano CD
- Capasso M
- Capistrn T
- Capocasa E
- Capone A
- Capozzi D
- Cappellaro E
- Caputo R
- Caramete L
- Caraveo P
- Caraveo PA
- Carbognani F
- Carboni G
- Cardenas B Vargas
- Cardillo M
- Caria T
- Caride S
- Carlin JL
- Carney MF
- Caroff S
- Carosi A
- Carr J
- Carramiana A
- Carretti E
- Cartier R
- Caruso R
- Carver T
- Casadio C
- Casado A Lopez
- Casanova S
- Casanova S
- Casasola V
- Casella P
- Casentini C
- Casey J
- Casier M
- Castander FJ
- Castangia P
- Castellina A
- Castellon A
- Castellon JL Nilo
- Castillo J Alvarez
- Castillo M
- Castro JM Gonzalez
- Castro ML Diaz
- Castro-Tirado AJ
- Casu S
- Catalani F
- Cataldi G
- Cattaneo PW
- Caudill S
- Cavagli M
- Cavalier F
- Cavalieri R
- Cavazzuti E
- Cazon L
- Cella G
- Celli S
- Cenko SB
- Cepeda CB
- Cerd-Durn P
- Ceron JM Castro
- Cerretani G
- Cerruti M
- Cerutti AC Cobos
- Cesarini E
- Chakraborty N
- Chamberlin SJ
- Chambers KC
- Chan M
- Chandra P
- Chang S-W
- Chang Z
- Chao S
- Charlton P
- Chase E
- Chassande-Mottin E
- Chatterjee D
- Chatterjee D
- Chatziioannou K
- Chaves RCG
- Chavez AG
- Chavushyan V
- Cheeseboro BD
- Chekhtman A
- Chen A
- Chen G
- Chen HY
- Chen L
- Chen T-W
- Chen TX
- Chen X
- Chen Y
- Chen Y
- Chen YB
- Chen YP
- Chenevez J
- Cheng H-P
- Cherry ML
- Cheung CC
- Cheung E
- Chevalier J
- Chia H
- Chiang J
- Chiarusi T
- Chincarini A
- Chinellato JA
- Chirkin D
- Chiummo A
- Chmiel T
- Cho HS
- Cho M
- Choi C
- Choi J-S
- Chornock R
- Chow JH
- Christensen N
- Christov A
- Chu Q
- Chua AJK
- Chua S
- Chudoba J
- Chung AKW
- Chung S
- Ciani G
- Cikota A
- Ciolfi R
- Ciprini S
- Circella M
- Cirelli CE
- Cirone A
- Clara F
- Clark JA
- Clark K
- Clark P
- Clarke TE
- Classen L
- Clay RW
- Clearwater P
- Cleva F
- Cleveland WH
- Cline T
- Cobb BE
- Cocchieri C
- Coccia E
- Coelho JAB
- Coelho P
- Coenders S
- Cohadon P-F
- Cohen D
- Cohen-Tanugi J
- Colafrancesco S
- Colafrancesco S
- Colalillo R
- Colazo C
- Coleiro A
- Coleman A
- Colla A
- Collaboration ALMA
- Collaboration ANTARES
- Collaboration BOOTES
- Collaboration CALET
- Collaboration DLT40
- Collaboration HAWC
- Collaboration HESS
- Collaboration IceCube
- Collaboration IKI-GW Follow-up
- Collaboration Insight-Hxmt
- Collaboration IPN
- Collaboration KU
- Collaboration LOFAR
- Collaboration MASTER
- Collaboration Pi Sky
- Collaboration Pierre Auger
- Collaboration Swift
- Collaboration VINROUGE
- Collette CG
- Collica L
- Collin GH
- Colmenero E Romero
- Coluccia MR
- Cominsky LR
- Cominsky LR
- Conceicao R
- Concu R
- Condon B
- Coniglione R
- Connaughton V
- Conrad J
- Conrad JM
- Consolati G
- Consortium TZAC
- Constancio M
- Conti L
- Contreras F
- Cook DO
- Cook ER
- Cooke J
- Cooper MJ
- Cooper SJ
- Copperwheat C
- Corban P
- Corbitt TR
- Cordero-Carrion I
- Corley KR
- Cornish N
- Corongiu A
- Corral-Santana JM
- Corsi A
- Cortese S
- Costa CA
- Costa CF Da Silva
- Costa E
- Costa-Duarte MV
- Costantin D
- Costantini H
- Cotti U
- Cotzomi J
- Coughlin M
- Coughlin MW
- Coughlin SB
- Coulon J-P
- Coulter DA
- Countryman ST
- Courvoisier TJ-L
- Coutu S
- Couvares P
- Covas PB
- Covault CE
- Covino S
- Cowan EE
- Coward DM
- Coward DM
- Cowart MJ
- Cowen DF
- Cowperthwaite P
- Coyle P
- Coyne DC
- Coyne R
- Crawford S
- Creighton JDE
- Creighton TD
- Creusot A
- Cripe J
- Crisp H
- Crocce M
- Cronin J
- Cross R
- Crosse B
- Crowder SG
- Cucchiara A
- Cui W
- Cui WW
- Cullen TJ
- Cumming A
- Cunha CE
- Cunniffe R
- Cunningham L
- Cuoco A
- Cuoco E
- Cusumano G
- Cutter R
- Cwiek A
- Cwiok M
- Czyrkowski H
- D'Al A
- D'Amico F
- D'Amico S
- D'Ammando F
- D'Andrea CB
- D'Antonio S
- D'Avanzo P
- D'Elia V
- D'Olivo JC
- Da Costa LN
- Dabrowski R
- Dadina M
- Dal Canton T
- Daniel B
- Danilishin SL
- Danzmann K
- Dasgupta A
- Dasso S
- Dattilo V
- Daumiller K
- Dave I
- Davids ID
- Davier M
- Davis C
- Davis D
- Daw EJ
- Dawson BR
- Day B
- Day JA
- Day M
- De Almeida RM
- De Andre JPAM
- De Bonis G
- De Carvalho W Rodrigues
- De Cesare G
- De Cia A
- De Clercq C
- De Gois JS
- De Gregorio-Monsalvo I
- De Jong M
- De Jong SJ
- De la Fuente E
- De laurentis M
- De Leon C
- De Leon S Coutio
- De Mauro G
- De Mitri I
- De Naurois M
- de Oliveira C Mendes
- De Oliveira J
- De Oliveira MA Leigui
- de Oliveira R Lopes
- De Palma F
- De Pasquale M
- De Pietri R
- De Ridder S
- De Rosa R
- De Rossi C
- De Souza V
- De Ugarte-Postigo A
- De Varona O
- De Vries KD
- De Wasseige G
- De With M
- De K
- De S
- Debatin J
- Debra D
- Decock J
- Degallaix J
- Deiana GL
- Deil C
- Del Monte E
- Del Pozzo W
- Del Pulgar C Perez
- DeLaunay JJ
- Deleglise S
- Deligny O
- Della Valle M
- Deller AT
- Dembinski H
- Demos N
- Deng JK
- Denker T
- Denneau L
- Dennefeld M
- Dent T
- Depoy DL
- Dergachev V
- DeRosa RT
- Desai S
- DeSalvo R
- Deschamps A
- Desiati P
- Dessart L
- Devenson J
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- Michelson PF
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- Milia Sabrina
- Miller AA
- Miller CJ
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- Moment G
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- Monzani ME
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- Moore CJ
- Moore RW
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- Moreno E
- Moreno G
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- Morita K
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- Morlino G
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- Morris D
- Morriss SR
- Morselli A
- Morselli A
- Moskalenko IV
- Moskvitin AS
- Mostaf M
- Motohara K
- Moulai M
- Moulin E
- Mours B
- Moussa A
- Mow-Lowry CM
- Mrka S
- Mrka Z
- Mueller AL
- Mueller AL
- Mueller BB
- Mueller G
- Mueller G
- Mueller MA
- Mueller S
- Muir AW
- Muir J
- Mukherjee Arunava
- Mukherjee D
- Mukherjee S
- Mukund N
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- Munch J
- Mundell CG
- Muniz EA
- Muoz A Gonzolez
- Muoz RR
- Murach T
- Murata KL
- Muratore M
- Murguia-Berthier A
- Murphy T
- Murray PG
- Mussa R
- Myers ST
- Nagai H
- Nagashima H
- Nagayama T
- Nahnhauer R
- Nakahira S
- Nakajima M
- Nakamura Y
- Nakaoka T
- Nakar E
- Nakarmi P
- Nakashima S
- Nakata F
- Nang Y
- Napier K
- Naranjo I
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- Natalucci L
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- Naumann U
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- Navarrini Alessandro
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- Neilsen E
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- Nynka M
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- Odaka H
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- Ohme F
- Ohsawa R
- Ohshima T
- Ohta K
- Oikonomou F
- Ojha R
- Okada MA
- Okita H
- Oleynik Ph P
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- Opiela R
- Oppermann P
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- Orienti M
- Orlando E
- Orlati A
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- Ortu P
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- Oslowski S
- Ossokine S
- Ostrowski M
- Ottaway DJ
- Ou G
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- Owen BJ
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- Ozawa S
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- Pace AE
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- Padilla N
- Padovani M
- Pagani C
- Page J
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- Page MA
- Pai A
- Pai SA
- Pal-Singh A
- Palamos JR
- Palashov O
- Palatiello M
- Palatka M
- Palazzi E
- Palczewski T
- Paliya VS
- Palliyaguru N
- Palliyaguru NT
- Pallot D
- Pallotta J
- Palmas S
- Palmer DM
- Palmerio JT
- Palmese A
- Palomba C
- Pan Howard
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- Pandey SB
- Pandya H
- Paneque D
- Pang B
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- Pankova DV
- Pankow C
- Pannarale F
- Pant BC
- Panter M
- Paoletti F
- Paoletti F
- Paoli A
- Papa MA
- Papenbreer P
- Paragi Z
- Parente G
- Parida A
- Park IH
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- Parra A
- Parsons RD
- Pascucci D
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- Passaquieti R
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- Paul T
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- Pavana M
- Paxman J
- Paz-Chinchn F
- Pea-Rodriguez J
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- Pech M
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- Pedreira F
- Pedurand R
- Peiffer P
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- Pekeur NW
- Pekowsky L
- Pelayo R
- Pele A
- Pellegrino C
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- Pellizzoni A
- Penacchioni AV
- Penn S
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- Pepper JA
- Pereira LAS
- Perennes C
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- Perley DA
- Perlin M
- Perreca A
- Perri LM
- Perri M
- Perrina C
- Perrodin D
- Perrone L
- Pescalli A
- Pesce-Rollins M
- Peters C
- Peters WM
- Petrera S
- Petrucci P-O
- Peyaud B
- Pfeiffer HP
- Phelps M
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- Phuntsok J
- Pian E
- Piano G
- Piattelli P
- Piccinni OJ
- Pichot M
- Picozza P
- Piel Q
- Pieloth D
- Piergiovanni F
- Pierog T
- Pierro V
- Pignata G
- Pike S
- Pilia M
- Pillant G
- Pimenta M
- Pinard L
- Pinat E
- Pinto IM
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- Piran T
- Piran T
- Piranomonte S
- Pirello M
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- Piron F
- Pirronello V
- Pisanu T
- Pita S
- Pitkin M
- Pittori C
- Placco VM
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- Podesta F
- Podesta RC
- Podsiadlowski P
- Poe M
- Poggiani R
- Poh J
- Poireau V
- Pollmann A Obertacke
- Poolakkil S
- Poon H
- Popa V
- Popolizio P
- Poppi S
- Porowski C
- Porter EK
- Porter TA
- Possenti A
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- Potter SB
- Powell J
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- Poznanski D
- Pradier T
- Prado RR
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- Prestegard T
- Pretz J
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- Prijatelj M
- Principe G
- Principe M
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- Privitera P
- Privitera S
- Prochaska JX
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- Prokhorov D
- Prokhorov LG
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- Prouza M
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- Przybylski GT
- Pulone L
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- Puncken O
- Punturo M
- Puppo P
- Qi H
- Qi H
- Qu JL
- Quataert E
- Quel EJ
- Querchfeld S
- Querel R
- Quetschke V
- Quimby RM
- Quinn L
- Quinn S
- Quinones C
- Quintero EA
- Quirrenbach A
- Quispe ID Vergara
- Quitzow-James R
- Raab C
- Raab FJ
- Raab S
- Rabeling DS
- Rabus M
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- Racusin J
- Radkins H
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- Rain S
- Raja S
- Raja W
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- Rameez M
- Ramirez KE
- Ramirez-Ruiz E
- Ramos-Buades A
- Ramos-Pollan R
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- Rando R
- Rao AR
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- Rappoldi A
- RATIR RIMAS
- Rau A
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- Raymond V
- Razza A
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- Razzano M
- Razzaque S
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- Regimbau T
- Rei L
- Reichart DE
- Reid S
- Reimann R
- Reimer A
- Reimer A
- Reimer O
- Reimer O
- Reitze DH
- Relethford B
- Relich M
- Ren W
- Ren Z
- Renaud M
- Renzi V
- Reposeur T
- Resconi E
- Resmi L
- Rest A
- Reva IV
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- Reyes SD
- Reynolds T
- Rho CD
- Rhode W
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- Ricci R
- Ricciarini S
- Riccobene G
- Richman M
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- Risse M
- Ristori P
- Rivera A Ramirez
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- Rizi V
- Rizzo M
- Roberts OJ
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- Robie R
- Robinet F
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- Rosenberg M
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- Roth M
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- Rowell G
- Rowlinson A
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- Roy R
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- Sahakian V
- Sai N
- Saito S
- Saito T
- Saito Y
- Sakamaki A
- Sakamoto T
- Sakellariadou M
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- Salamida F
- Salazar H
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- Saleem M
- Saleh A
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- Sanchez B
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- Sand DJ
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- Sarazin F
- Sarkar S
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- Sarmiento-Cano C
- Sasaki M
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- Sassolas B
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- Schieler H
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- Schneider A
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- Schofield RMS
- Scholten O
- Schonbeck A
- Schoneberg S
- Schoorlemmer H
- Schovnek P
- Schreiber E
- Schroder FG
- Schroder S
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- Schulz A
- Schulz A
- Schulze S
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- Scott J
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- Sellers D
- Selsing J
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- Sentenac D
- Sequino V
- Sergeev A
- Sergienko Yu P
- Serino M
- Serra G
- Serra-Ricart M
- Serrau M
- Settimo M
- Seunarine S
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- Shidatsu M
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- Siemens X
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- Steinlechner J
- Steinlechner S
- Steinmeyer D
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- Suarez F
- Suarez-Duran M
- Suchyta E
- Sudholz T
- Sugawara Y
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- Taboada A
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- Tacca M
- Tachibana Y
- Taddia F
- Tagliaferri G
- Tait SC
- Taiuti M
- Tajitsu A
- Takahashi I
- Takahashi J
- Takahashi M
- Takahashi T
- Takao Y
- Takayama M
- Talbot C
- Talukder D
- Tamura T
- Tamura Y
- Tan Y
- Tanaka I
- Tanaka M
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- Tanimoto A
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- Tao C
- Tao L
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- Taracchini A
- Tarle G
- Tartaglia L
- Tasson JD
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- Ter Veen S
- Ter-Antonyan S
- Terai T
- Terliuk A
- Terreran G
- Terrier R
- Tesic G
- Testa V
- Tewari SV
- Thayer JB
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- Theeg T
- Thene CC
- Thierry P
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- Thies F
- Thomas EG
- Thomas M
- Thomas P
- Thomas RC
- Thompson DJ
- Thorne KA
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- Thrane E
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- Tibolla O
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- Timmermans C
- Tingay SJ
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- Tiwari V
- Tiziani D
- Tjus J Becker
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- Tlatov AG
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- Tonnis C
- Tonry J
- Torii S
- Tornasi Z
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- Torres DF
- Torres I
- Torres-Flores S
- Torres-Forn A
- Torresi E
- Torrie CI
- Toscano S
- Tosi D
- Towner MC
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- Tpai M
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- Travnicek P
- Traylor G
- Trichard C
- Trifoglio M
- Trinastic J
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- Troja E
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- Troxel MA
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- Tsuji N
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- Tsunemi H
- Tsvetkova AE
- Tucker BE
- Tucker DL
- Tueros M
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- Tung CF
- Tungalag N
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- Turatto M
- Turcati A
- Turley CF
- Turpin D
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- Tuyenbayev D
- Ty B
- Tyurina NV
- Ubertini P
- Uchiyama Y
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- Uemura M
- Ueno K
- Ueno S
- Ugolini D
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- Publication venue
- 'American Astronomical Society'
- Publication date
- 01/01/2017
- Field of study
On 2017 August 17 a binary neutron star coalescence candidate (later designated GW170817) with merger time 12:41:04 UTC was observed through gravitational waves by the Advanced LIGO and Advanced Virgo detectors. The Fermi Gamma-ray Burst Monitor independently detected a gamma-ray burst (GRB 170817A) with a time delay of ~1.7 s with respect to the merger time. From the gravitational-wave signal, the source was initially localized to a sky region of 31 deg2 at a luminosity distance of 40+8-8 Mpc and with component masses consistent with neutron stars. The component masses were later measured to be in the range 0.86 to 2.26 Mo. An extensive observing campaign was launched across the electromagnetic spectrum leading to the discovery of a bright optical transient (SSS17a, now with the IAU identification of AT 2017gfo) in NGC 4993 (at ~40 Mpc) less than 11 hours after the merger by the One- Meter, Two Hemisphere (1M2H) team using the 1 m Swope Telescope. The optical transient was independently detected by multiple teams within an hour. Subsequent observations targeted the object and its environment. Early ultraviolet observations revealed a blue transient that faded within 48 hours. Optical and infrared observations showed a redward evolution over ~10 days. Following early non-detections, X-ray and radio emission were discovered at the transient’s position ~9 and ~16 days, respectively, after the merger. Both the X-ray and radio emission likely arise from a physical process that is distinct from the one that generates the UV/optical/near-infrared emission. No ultra-high-energy gamma-rays and no neutrino candidates consistent with the source were found in follow-up searches. These observations support the hypothesis that GW170817 was produced by the merger of two neutron stars in NGC4993 followed by a short gamma-ray burst (GRB 170817A) and a kilonova/macronova powered by the radioactive decay of r-process nuclei synthesized in the ejecta
Localization and broadband follow-up of the gravitational-wave transient GW150914
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- Publication venue
- Astrophysical Journal Letters
- Publication date
- 01/01/2016
- Field of study
A gravitational-wave (GW) transient was identified in data recorded by the Advanced Laser Interferometer Gravitational-wave Observatory (LIGO) detectors on 2015 September 14. The event, initially designated G184098 and later given the name GW150914, is described in detail elsewhere. By prior arrangement, preliminary estimates of the time, significance, and sky location of the event were shared with 63 teams of observers covering radio, optical, near-infrared, X-ray, and gamma-ray wavelengths with ground- and space-based facilities. In this Letter we describe the low-latency analysis of the GW data and present the sky localization of the first observed compact binary merger. We summarize the follow-up observations reported by 25 teams via private Gamma-ray Coordinates Network circulars, giving an overview of the participating facilities, the GW sky localization coverage, the timeline, and depth of the observations. As this event turned out to be a binary black hole merger, there is little expectation of a detectable electromagnetic (EM) signature. Nevertheless, this first broadband campaign to search for a counterpart of an Advanced LIGO source represents a milestone and highlights the broad capabilities of the transient astronomy community and the observing strategies that have been developed to pursue neutron star binary merger events. Detailed investigations of the EM data and results of the EM follow-up campaign are being disseminated in papers by the individual teams
Diversidade genética de Cucurbita pepo, C. argyrosperma e C. ficifolia empregando marcadores microssatélites
- Author
- ADONINA IG
- Antonio C de Oliveira
- BUSSAD WO
- Caroline M Castro
- CHEN SY
- Claudete C Mistura
- Daniela Priori
- DANIN-POLEG Y
- DICE LR
- FERREIRA M
- FERREIRA MAJF
- GONG L
- GONZÁLEZ-MARTÍNEZ SC
- HEIDEN G
- HERNANDEZ P
- INAN N
- Juliana CB Vilela
- LEITE TL
- LORIEUX M
- OLIVEIRA MSP
- PALOP M
- PARIS HS
- PRIORI D
- RALLO P
- RAMOS SRR
- RITSCHEL PS
- ROHLF FJ
- Rosa Lía Barbieri
- SANTOS KL
- SCHUSTER I
- SHARMA PC
- SOKAL RR
- VALLS JFM
- WEIR BS
- WUENSCH A
- YAMAMOTO T
- YAP IV
- ZUCCHI MI
- Publication venue
- 'FapUNIFESP (SciELO)'
- Publication date
- Field of study
Measurements of Higgs bosons decaying to bottom quarks from vector boson fusion production with the ATLAS experiment at √=13TeV
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- Cairo VMM
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- Zhu CG
- Zhu H
- Zhu HL
- Zhu J
- Zhu Y
- Zhuang X
- Zhukov K
- Zhulanov V
- Zieminska D
- Zimine NI
- Zimmermann S
- Zinonos Z
- Ziolkowski M
- Zoccoli A
- Zoch K
- Zorbas TG
- Zou R
- Zwalinski L
- Åkesson TPA
- Öncel ÖO
- Ženiš T
- Živković L
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 23/06/2021
- Field of study
The paper presents a measurement of the Standard Model Higgs Boson decaying to b-quark pairs in the vector boson fusion (VBF) production mode. A sample corresponding to 126 fb−1 of s√=13TeV proton–proton collision data, collected with the ATLAS experiment at the Large Hadron Collider, is analyzed utilizing an adversarial neural network for event classification. The signal strength, defined as the ratio of the measured signal yield to that predicted by the Standard Model for VBF Higgs production, is measured to be 0.95+0.38−0.36 , corresponding to an observed (expected) significance of 2.6 (2.8) standard deviations from the background only hypothesis. The results are additionally combined with an analysis of Higgs bosons decaying to b-quarks, produced via VBF in association with a photon
Search for excited electrons singly produced in proton–proton collisions at \sqrt{s} = 13 TeV with the ALAS experiment at the LHC
- Author
- Aaboud M
- Aad G
- Abbott B
- Abbott DC
- Abdinov O
- Abeloos B
- Abhayasinghe DK
- Abidi SH
- AbouZeid OS
- Abraham NL
- Abramowicz H
- Abreu H
- Abulaiti Y
- Acharya BS
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- Adelman J
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- Zhemchugov A
- Zheng Z
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- Zhulanov V
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- Zinonos Z
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- Zobernig G
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- Åkesson TPA
- Šfiligoj T
- Ženiš T
- Živković L
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 01/09/2019
- Field of study
A search for excited electrons produced in pp collisions at s√ = 13 TeV via a contact interaction qq¯→ee∗ is presented. The search uses 36.1 fb −1 of data collected in 2015 and 2016 by the ATLAS experiment at the Large Hadron Collider. Decays of the excited electron into an electron and a pair of quarks ( eqq¯ ) are targeted in final states with two electrons and two hadronic jets, and decays via a gauge interaction into a neutrino and a W boson ( νW ) are probed in final states with an electron, missing transverse momentum, and a large-radius jet consistent with a hadronically decaying W boson. No significant excess is observed over the expected backgrounds. Upper limits are calculated for the pp→ee∗→eeqq¯ and pp→ee∗→eνW production cross sections as a function of the excited electron mass me∗ at 95% confidence level. The limits are translated into lower bounds on the compositeness scale parameter Λ of the model as a function of me∗ . For me∗<0.5 TeV , the lower bound for Λ is 11 TeV . In the special case of me∗=Λ , the values of me∗<4.8 TeV are excluded. The presented limits on Λ are more stringent than those obtained in previous searches
The ATLAS inner detector trigger performance in pp collisions at 13 TeV during LHC Run 2
- Author
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- Publication venue
- Publication date
- 01/01/2022
- Field of study
The design and performance of the inner detector trigger for the high level trigger of the ATLAS experiment at the Large Hadron Collider during the 2016-2018 data taking period is discussed. In 2016, 2017, and 2018 the ATLAS detector recorded 35.6 fb(-1), 46.9 fb(-1), and 60.6 fb(-1) respectively of proton-proton collision data at a centre-of-mass energy of 13TeV. In order to deal with the very high interaction multiplicities per bunch crossing expected with the 13TeV collisions the inner detector trigger was redesigned during the long shutdown of the Large Hadron Collider from 2013 until 2015. An overview of these developments is provided and the performance of the tracking in the trigger for the muon, electron, tau and b-jet signatures is discussed. The high performance of the inner detector trigger with these extreme interaction multiplicities demonstrates how the inner detector tracking continues to lie at the heart of the trigger performance and is essential in enabling the ATLAS physics programme
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