A new Neocalamites (Sphenophyta) with prickles and attached cones from the Upper Triassic of China

Remains of the extinct sphenophyte (horsetail) . Neocalamites are most widespread in the Middle-Upper Triassic and are typically represented by stem and leaf fragments. Here we report on spectacular new finds of . Neocalamites from the Late Triassic Yangcaogou Formation in Liaoning Province, China that include bedding surfaces dominated by nearly complete aerial stems with attached leaf whorls and rare bractless cones. They reveal a monopodial growth habit for the stems, which are covered with downward projecting prickles that probably provided protection against herbivores. These features provide the basis for a new proposed species, . Neocalamites horridus. The nodes bear whorls of very long leaves mainly free to their bases, and one specimen bears an attached cone on a long peduncle. Identical dispersed cones have also been recovered. The leaves of adjacent monopodial stems most likely interlocked to support growth in large stands akin to the role now played by branches in large modern . Equisetum species. The new Chinese . Neocalamites is among the most confidently reconstructed species, and indicates a greater diversity of sphenophyte morphology during the Mesozoic than previously realized.Fil: Zan, Shuqin. Geological Museum Of China; ChinaFil: Axsmith, Brian J.. University of Alabama at Birmingahm; Estados UnidosFil: Escapa, Ignacio Hernán. Museo Paleontológico Egidio Feruglio; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Fraser, Nicholas. National Museum Of Scotland; Reino UnidoFil: Liu, Feng Xiang. Geological Museum Of China; ChinaFil: Xing, De-He. Shenyang Institute Of Geology And Mineral Resources; Chin

Effects of three different probiotics of Tibetan sheep origin and their complex probiotics on intestinal damage, immunity, and immune signaling pathways of mice infected with Clostridium perfringens type C

Tibetan sheep have unique intestinal microorganisms in their intestines that are adapted to the highland alpine and anoxic environment. To further clarify the probiotic properties of Tibetan sheep-derived probiotics, we selected three Tibetan sheep-derived probiotic isolates (Enterococcus faecalis EF1-mh, Bacillus subtilis BS1-ql, and Lactobacillus sakei LS-ql) to investigate the protective mechanisms of monocultures and their complex strains against Clostridium perfringens type C infection in mice. We established a model of C. perfringens type C infection and used histology and molecular biology to analyze the effects and mechanisms of different probiotic treatments on mice after C. perfringens type C infection. After supplementation with either probiotics or complex probiotics, mice were improved in terms of weight reduction and reduced the levels of cytokines in serum and increased the levels of intestinal sIgA, and supplementation with complex probiotics was effective. In addition, both probiotic and complex probiotic supplementation effectively improved the damage of intestinal mucosa and spleen tissue. The relative expressions of Muc 2, Claudin-1, and Occludin genes were increased in the ileum. The three probiotics and the compound probiotics treatment significantly reduced the relative mRNA expression of toll-like/MyD88/NF-κB/MAPK. The effect of probiotic treatment was similar to the results of engramycin treatment, but the effect of engramycin treatment on intestinal sIgA was not significant. Our results clarify the immunomodulatory effects of the three probiotic isolates and the complex probiotics on C. perfringens infection, and the repair of the intestinal mucosal barrier

Chemically functionalised suspended-core fibre for ammonia gas detection

An optical fibre ammonia gas sensor utilising a functionalised four-leaf-clover-shaped suspended-core fibre (SCF) is demonstrated. The fibre is functionalised by depositing a thin layer of an ammonia sensitive dye (tetraphenylporphyrin tetrasulfonic acid hydrate) on the wall of the inner cavities of the SCF through capillary action. An in-line fibre sensing structure is designed for light transmission through the SCF and also allows gas exchange with the atmosphere through two porous polyethylene housings. The sensing structure exhibits a temperature-dependent transmission due to the thermal expansion of the housings. A ratiometric method is applied for signal processing which is demonstrated to reduce significantly the effect of temperature change in the tested range (20-30 C). The sensor is tested in ammonia concentration ranges from 0-10 ppm and demonstrates capability of detecting ammonia at ppb levels. The minimum tested concentration is 150 ppb in the experiment with a calculated limit of detection of 20 ppb. The sensor response time (T10-90%) is 160 s and it is demonstrated to be reusable after treatment with hydrogen chloride vapour. Numerical simulation of evanescent absorption features of such an SCF indicates that approximately 0.02% of the optical power exists in the air holes for the fundamental propagation mode. Distinctive absorption bands observed in the transmission spectrum of the fabricated sensor can also be observed in the simulated model after adding the TPPS absorption layer in the holes

Powdery Mildews Are Characterized by Contracted Carbohydrate Metabolism and Diverse Effectors to Adapt to Obligate Biotrophic Lifestyle

Powdery mildew is a widespread plant disease caused by obligate biotrophic fungal pathogens involving species-specific interactions between host and parasite. To gain genomic insights into the underlying obligate biotrophic mechanisms, we analyzed 15 microbial genomes covering powdery and downy mildews and rusts. We observed a genome-wide, massive contraction of multiple gene families in powdery mildews, such as enzymes in the carbohydrate metabolism pathway, when compared with ascomycete phytopathogens, while the fatty acid metabolism pathway maintained its integrity. We also observed significant differences in candidate secreted effector protein (CSEP) families between monocot and dicot powdery mildews, perhaps due to different selection forces. While CSEPs in monocot mildews are likely subject to positive selection causing rapid expansion, CSEP families in dicot mildews are shrinking under strong purifying selection. Our results not only illustrate obligate biotrophic mechanisms of powdery mildews driven by gene family evolution in nutrient metabolism, but also demonstrate how the divergence of CSEPs between monocot and dicot lineages might contribute to species-specific adaption

Thyroid function and associated mood changes after COVID-19 vaccines in patients with Hashimoto thyroiditis

ContextSevere acute respiratory syndrome-coronavirus 2 (COVID-19) vaccines may incur changes in thyroid functions followed by mood changes, and patients with Hashimoto thyroiditis (HT) were suggested to bear a higher risk.ObjectivesWe primarily aim to find whether COVID-19 vaccination could induce potential subsequent thyroid function and mood changes. The secondary aim was to find inflammatory biomarkers associated with risk.MethodsThe retrospective, multi-center study recruited patients with HT receiving COVID-19–inactivated vaccines. C-reactive proteins (CRPs), thyroid-stimulating hormones (TSHs), and mood changes were studied before and after vaccination during a follow-up of a 6-month period. Independent association was investigated between incidence of mood state, thyroid functions, and inflammatory markers. Propensity score–matched comparisons between the vaccine and control groups were carried out to investigate the difference.ResultsFinal analysis included 2,765 patients with HT in the vaccine group and 1,288 patients in the control group. In the matched analysis, TSH increase and mood change incidence were both significantly higher in the vaccine group (11.9% versus 6.1% for TSH increase and 12.7% versus 8.4% for mood change incidence). An increase in CRP was associated with mood change (p< 0.01 by the Kaplan–Meier method) and severity (r = 0.75) after vaccination. Baseline CRP, TSH, and antibodies of thyroid peroxidase (anti-TPO) were found to predict incidence of mood changes.ConclusionCOVID-19 vaccination seemed to induce increased levels and incidence of TSH surge followed by mood changes in patients with HT. Higher levels of pre-vaccine serum TSH, CRP, and anti-TPO values were associated with higher incidence in the early post-vaccine phase

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe

The effect of tea plantation age on soil water-stable aggregates and aggregate-associated carbohydrate in southwestern China

Soil carbohydrates constitute an important component of soil organic matter (SOM), and substantially contribute to the stabilization of soil aggregates. Here, we aimed to investigate the distribution of water-stable aggregates and carbohydrates within water-stable aggregates of soil in tea plantations located in Zhongfeng Township of Mingshan County, Sichuan, which is in southwest China. Samples were collected from tea plantations of different ages (18, 25, 33, and 55 years old) and an area of abandoned land was used as a control(CK). We also examined correlations between soil carbohydrates fractions and aggregate stability. The results showed that the mean weight diameter (MWD) of soil aggregates in the tea plantations was significantly higher than that the control. Furthermore, the soil aggregate stability was significantly enhanced in tea plantations, with the 25-year-old plantation showing the most pronounced effect. Soils in the plantations were also characterized by higher concentrated acid-extracted carbohydrate content, and carbohydrate content in both surface and sub-surface layers were higher in the 25-year-old plantation. We also detected a significant positive correlation between the carbohydrate content of soil and MWD after tea plantation (P < 0.01). Notably, the association between dilute-acid extracted carbohydrate and the aggregate stability showed the highest correlation, indicating this carbohydrate fraction could be used as an index to reflect changes in soil quality during tea plantation development. We should develop a potential fertilisation programme to maintain SOM- Carbohydrates within aggregates and the appropriate pH for preventing soil structure degradation after 25 years of tea planting