Frugivores At Higher Risk Of Extinction Are The Key Elements Of A Mutualistic Network

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Most tree species rely on vertebrates for seed dispersal, and many vertebrates use fruits as food resources in tropical forests. Therefore, plant-frugivore interactions affect population dynamics and persistence in ecological communities. Plant-frugivore interactions often involve many species, forming networks of interacting plants and animals that play different roles in determining network organization. The network organization is the way interactions are structured in the community, which may have consequences for its ecological and evolutionary dynamics. Some species have greater influences on network organization and may be particularly important to species persistence. We identified the frugivores most important to the organization of networks of plants and frugivorous birds in three contiguous Atlantic forest sites in southeastern Brazil. We found that the species that contributed most to network organization were at higher risk of extinction. Among the main contributors to network organization were two cotingas and a toucan, large-bodied species that disperse seeds from many plants and are particularly vulnerable to habitat loss and hunting. As a consequence, ongoing extinctions may significantly affect the organization of plant-frugivore interactions in the studied system. We hypothesize that the crucial role of some threatened frugivores may occur in other seed dispersal systems in tropical communities, although the association between structural importance and degree of threat may be contingent on peculiarities of local communities and disturbances.951234403447CAPES; São Paulo Research Foundation; #2009/54422-8; FAPESP; São Paulo Research Foundation; #2010/11633-6; FAPESP; São Paulo Research FoundationFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Allesina, S., Tang, S., Stability criteria for complex ecosystems (2012) Nature, 483, pp. 205-208Almeida-Neto, M., Guimarães, P., Guimarães, P.R., Jr., Loyola, R.D., Ulrich, W., A consistent metric for nestedness analysis in ecological systems: Reconciling concept and measurement (2008) Oikos, 117, pp. 1227-1239Banks-Leite, C., Ewers, R.M., Metzger, J.P., Unraveling the drivers of community dissimilarity and species extinction in fragmented landscapes (2012) Ecology, 93, pp. 2560-2569Bascompte, J., Jordano, P., Plant-animal mutualistic networks: The architecture of biodiversity (2007) Annual Review of Ecology, Evolution, and Systematics, 38, pp. 567-593Bascompte, J., Jordano, P., Melián, C.J., Olesen, J.M., The nested assembly of plant-animal mutualistic networks (2003) Proceedings of the National Academy of Sciences USA, 100, pp. 9383-9387Carlo, T.A., Yang, S., Network models of frugivory and seed dispersal: Challenges and opportunities (2011) Acta Oecologica, 37, pp. 619-624Da Silva, J.M.C., Tabarelli, M., Tree species impoverishment and the future flora of the atlantic forest of Northeast Brazil (2000) Nature, 404, pp. 72-74(2008) Plano de Manejo Do Parque Estadual Intervales. 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GEANT4 : a simulation toolkit

Abstract Geant4 is a toolkit for simulating the passage of particles through matter. It includes a complete range of functionality including tracking, geometry, physics models and hits. The physics processes offered cover a comprehensive range, including electromagnetic, hadronic and optical processes, a large set of long-lived particles, materials and elements, over a wide energy range starting, in some cases, from 250 eV and extending in others to the TeV energy range. It has been designed and constructed to expose the physics models utilised, to handle complex geometries, and to enable its easy adaptation for optimal use in different sets of applications. The toolkit is the result of a worldwide collaboration of physicists and software engineers. It has been created exploiting software engineering and object-oriented technology and implemented in the C++ programming language. It has been used in applications in particle physics, nuclear physics, accelerator design, space engineering and medical physics. PACS: 07.05.Tp; 13; 2

Strontium isotopic geochemistry of Pan-African/Brasiliano rocks, Chapada copper deposit, Goiás, Brazil

Das Trägergestein der Chapada Kupferlagerstätte in Goiás ist in metamorpher Hoch-Amphibolitfazies ausgebildet. Gesamtgesteins- und individuelle Mineral Rb-Sr-Isochronen mit einem 87 Sr/ 86 Sr-Initialwert (I) von 0,70414±0.00005 ergeben für die Kristallisation der Vulkanite und Magmatite, die die Metamorphose vordatieren, ein Alter von 561±9 Mio Jahre. Die Datierung der Metamorphose während der panafrikanisch/brasilianischen Orogenese (700 bis 450 Mio Jahre) ergibt 532±1 Mio Jahre. Das Mineral-Isochronenalter eines Dioritkörpers porphyrischen Gefüges, der in die Schiefer intrudierte, beträgt 534±16 Mio Jahre (I=0,70415 ±0,00004). Das Ergebnis niedriger Initial-Werte dieser Isochronen ergibt für die Schiefer bei Chapada ein Ausgangs-Material im Bereich des oberen Mantels oder der tieferen Kruste; diese Ausgangswerte sind charakteristisch für magmatische Tätigkeit in Verbindung mit Inselbögen. Das unterkambrische Alter des Trägergesteins bei Chapada steht im Widerspruch zu dem bisher angenommenen mittelproterozoischen Alter und ist ein Hinweis auf eine mögliche Phase intensiverer pan-afrikanisch/brasilianischer magmatischer Aktivität in Zentral-Brasilien als ursprünglich angenommen wurde. Whole rock and mineral Rb-Sr isochrons from the upper amphibolite grade metamorphic host rocks of the Chapada copper deposit in Goiás, Brazil, yield an age of 561±9 Ma, with a 87 Sr/ 86 Sr initial (I) of 0.70414±0.00005, for the crystallization of pre-metamorphic volcanic and igneous rocks and 532 ±1 Ma for their metamorphism during the Pan-African/Brasiliano orogeny (700-450 Ma). A porphyritic diorite stock which intruded the host schists yields a mineral isochron age of 534±16 Ma (I=0.70415±0.00004). The low I values determined from these isochrons suggest that the host schists at Chapada were derived from upper mantle or lower crust material and are characteristic of magmatic products associated with island arcs. The Early Cambrian age of the host rocks at Chapada contradicts the previously assigned mid-Proterozoic age and suggests that Pan-African/Brasiliano magmatic activity may have been more extensive in central Brazil than previously thought. Les roches qui contiennent le gisement de cuivre de Chapada (Goias, Brésil) sont des schistes cristallins appartenent au facies dupérieur des amphibolites. Dans des volcanites et des roches orthomagmatiques appartenant à cet ensemble, des isochrones Rb-Sr sur roches totales et sur minéraux donnent un âge de 561±9 Ma avec un rapport initial de 0,70414±0,00005 pour la cristallisation pré-métamorphique et un âge de 532±1 Ma pour le métamorphisme, lié à l'orogenèse pan-africaine / brésilienne. Un pluton de diorite porphyrique, qui intrude les schistes cristallins donne, par isochrone sur minéraux, un âge de 534±16 Ma (rapport initial de 0,70415±0,00004). Les valeurs basses des rapports initiaux de ces diverses roches suggèrent que les schistes de Chapada sont dérivés de matériaux mantelliques ou crustaux profonds et présentent les caractères des produits magmatiques associés aux arcs insulaires. Leur âge éo-cambrien, en contradiction avec l'âge mésoprotérozoïque admis jusqu'ici, permet de penser que l'activité magmatique pan-africaine/brésilienne dans le centre du Brésil a été plus intense que ce qu'on croyait jusqu'ici. Вмещающие породы зал ежи меди Chapada в Goiбs представляют собой а мфиболитовую фацию в ысшей степени метаморфизм а. Цельная порода и отд ельные минералы дают для кри сталлизации вулкани тов и магматитов до метаморфизма нача льное значение соотн ошения стронция в 0,70414±0,00005, что раз решает принять их возраст в 561± 9 Мио лет, а возраст мет аморфизма в 532±1 Мио, т. е. отнести его к периоду панафриканского -бра зильского орогенеза / 700 до 450 Мио /. При определении в озраста минералов из диоритных тел порфиритовых тек стур, интрудированны х в сланец, получили дат ы в 534±16 Мио лет / 1 = 0,70415 = 0,00004 /. Такое низкое значе ние исходных величин соотношения изотопов разрешает п редполагать, что материал для Chapada при несен был из мантии, или глубинных регион ов коры. Эти исходные з начения характерны для магма тической деятельнос ти типа островных дуг. Во зраст вмещающих поро д считают средне-протерозойск им; это стоит в противо речии с новейшими данными, п о которым он может быт ь только нижнекембрий ским. Это также указыв ает на то, что фаза пан-африка нско-бразильской маг матической активности в централ ьной Бразилии протек ала, возможно, гораздо инт енсивнее, чем принима ли это до сих пор.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/47849/1/531_2005_Article_BF01830182.pd

Zebrafish Kidney Phagocytes Utilize Macropinocytosis and Ca2+-Dependent Endocytic Mechanisms

Background: The innate immune response constitutes the first line of defense against invading pathogens and consists of a variety of immune defense mechanisms including active endocytosis by macrophages and granulocytes. Endocytosis can be used as a reliable measure of selective and non-selective mechanisms of antigen uptake in the early phase of an immune response. Numerous assays have been developed to measure this response in a variety of mammalian and fish species. The small size of the zebrafish has prevented the large-scale collection of monocytes/macrophages and granulocytes for these endocytic assays. Methodology/Principal Findings: Pooled zebrafish kidney hematopoietic tissues were used as a source of phagocytic cells for flow-cytometry based endocytic assays. FITC-Dextran, Lucifer Yellow and FITC-Edwardsiella ictaluri were used to evaluate selective and non-selective mechanisms of uptake in zebrafish phagocytes. Conclusions/Significance: Zebrafish kidney phagocytes characterized as monocytes/macrophages, neutrophils and lymphocytes utilize macropinocytosis and Ca 2+-dependant endocytosis mechanisms of antigen uptake. These cells do not appear to utilize a mannose receptor. Heat-killed Edwardsiella ictaluri induces cytoskeletal interactions for internalization in zebrafish kidney monocytes/macrophages and granulocytes. The proposed method is easy to implement and should prove especially useful in immunological, toxicological and epidemiological research

GEANT4--a simulation toolkikt

Geant4 is a toolkit for simulating the passage of particles through matter. It includes a complete range of functionality including tracking, geometry, physics models and hits. The physics processes offered cover a comprehensive range, including electromagnetic, hadronic and optical processes, a large set of long-lived particles, materials and elements, over a wide energy range starting, in some cases, from 250 eV and extending in others to the TeV energy range. It has been designed and constructed to expose the physics models utilised, to handle complex geometries, and to enable its easy adaptation for optimal use in different sets of applications. The toolkit is the result of a worldwide collaboration of physicists and software engineers. It has been created exploiting software engineering and object-oriented technology and implemented in the C++ programming language. It has been used in applications in particle physics, nuclear physics, accelerator design, space engineering and medical physics

Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)

In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. For example, a key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process versus those that measure fl ux through the autophagy pathway (i.e., the complete process including the amount and rate of cargo sequestered and degraded). In particular, a block in macroautophagy that results in autophagosome accumulation must be differentiated from stimuli that increase autophagic activity, defi ned as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (inmost higher eukaryotes and some protists such as Dictyostelium ) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the fi eld understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. It is worth emphasizing here that lysosomal digestion is a stage of autophagy and evaluating its competence is a crucial part of the evaluation of autophagic flux, or complete autophagy. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. Along these lines, because of the potential for pleiotropic effects due to blocking autophagy through genetic manipulation it is imperative to delete or knock down more than one autophagy-related gene. In addition, some individual Atg proteins, or groups of proteins, are involved in other cellular pathways so not all Atg proteins can be used as a specific marker for an autophagic process. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field