Dust Modeling with GEOS-Chem: Evidence for Acidic Uptake on Dust Surfaces during INTEX-B

We use measurements of aerosol ion composition and size made from the DC8 aircraft during the 2006 INTEX-B airborne campaign to identify mineral dust signatures, and look for evidence for interaction of dust with acidic components. Coating of dust with sulfate or nitrate favors the role of dust particles as cloud condensation nucleii, can promote further uptake of SO2 and N2O5, can impact NOx/HNO3 partitioning, and can shift sulfate or nitrate towards larger sizes, affecting atmospheric lifetimes for both aerosol and gas components. Mineral dust had a pervasive presence on flights made during the Northern Pacific deployment of the INTEX-B mission. We use scatter plots of ion mixing ratios with Na+ and Ca(2+) to distinguish sea salt and mineral components of the aerosol distribution, respectively. Positive correlations of non-sea-salt sulfate and nitrate with calcium indicate that the dusty air stream is associated with polluted air masses. Sulfate-ammonium scatter plots indicate sulfate to be primarily in the form of (NH4)2SO4. A positive correlation between Ca(2+) and NO-, but little evidence of NH4NO3, suggests that NO3- may be associated with mineral dust surfaces. 3-d model simulations conducted with the GEOS-Chem chemical transport model indicate that transpacific transport from East Asia was principally responsible for the dust observed from the aircraft over the Pacific. We compare the aerosol component relationships in the model with those observed. Uptake of sulfate and nitrate on the dust is not yet represented in the model

Filling the Gaps: The Synergistic Application of Satellite Data for the Volcanic Ash Threat to Aviation

Although significant progress has been made in recent years, estimating volcanic ash concentration for the full extent of the airspace affected by volcanic ash remains a challenge. No single satellite, airborne or ground observing system currently exists which can sufficiently inform dispersion models to provide the degree of accuracy required to use them with a high degree of confidence for routing aircraft in and near volcanic ash. Toward this end, the detection and characterization of volcanic ash in the atmosphere may be substantially improved by integrating a wider array of observing systems and advancements in trajectory and dispersion modeling to help solve this problem. The qualitative aspect of this effort has advanced significantly in the past decade due to the increase of highly complementary observational and model data currently available. Satellite observations, especially when coupled with trajectory and dispersion models can provide a very accurate picture of the 3-dimensional location of ash clouds. The accurate estimate of the mass loading at various locations throughout the entire plume, however improving, remains elusive. This paper examines the capabilities of various satellite observation systems and postulates that model-based volcanic ash concentration maps and forecasts might be significantly improved if the various extant satellite capabilities are used together with independent, accurate mass loading data from other observing systems available to calibrate (tune) ash concentration retrievals from the satellite systems

Transpacific Transport of Asian Anthropogenic Aerosols and its Impact on Surface Air Quality in the United States

We use satellite (MODIS) observations of aerosol optical depths (AODs) over the North Pacific, together with surface aerosol measurements at a network of remote U.S. sites (IMPROVE), to improve understanding of the transpacific transport of Asian aerosol pollution and assess the ability of a global 3-D chemical transport model (GEOS-Chem CTM) to quantify Asian aerosol enhancements in U.S. surface air. The MODIS observations show the strongest transpacific transport occurring in spring at 40–55°N. This transport in the model takes place mainly in the lower free troposphere (900–700 hPa) because of scavenging during transport either in the boundary layer or during lifting to the upper troposphere. The preferential altitude of aerosol transpacific transport results in direct impact on the elevated terrain of the NW United States. Sulfate observations in the NW United States in spring 2001 show higher concentrations on the days of model-predicted maximum Asian influence (1.04 μg m−3) than seasonal mean values (0.69 μg m−3). No such Asian enhancements are observed for nitrate or for organic carbon (OC) aerosol. Distinct Asian sulfate episodes correlated with dust events are observed in the NW United States and simulated with the model. The mean Asian pollution enhancement in that region in spring is 0.16 μg m−3 with a 50% estimated uncertainty. This is higher than the estimated natural concentration of 0.09 μg m−3 presently used as objective for regulation of visibility in U.S. wilderness areas.Earth and Planetary SciencesEngineering and Applied Science

Intercomparison of Martian Lower Atmosphere Simulated Using Different Planetary Boundary Layer Parameterization Schemes

We use the mesoscale modeling capability of Mars Weather Research and Forecasting (MarsWRF) model to study the sensitivity of the simulated Martian lower atmosphere to differences in the parameterization of the planetary boundary layer (PBL). Characterization of the Martian atmosphere and realistic representation of processes such as mixing of tracers like dust depend on how well the model reproduces the evolution of the PBL structure. MarsWRF is based on the NCAR WRF model and it retains some of the PBL schemes available in the earth version. Published studies have examined the performance of different PBL schemes in NCAR WRF with the help of observations. Currently such assessments are not feasible for Martian atmospheric models due to lack of observations. It is of interest though to study the sensitivity of the model to PBL parameterization. Typically, for standard Martian atmospheric simulations, we have used the Medium Range Forecast (MRF) PBL scheme, which considers a correction term to the vertical gradients to incorporate nonlocal effects. For this study, we have also used two other parameterizations, a non-local closure scheme called Yonsei University (YSU) PBL scheme and a turbulent kinetic energy closure scheme called Mellor- Yamada-Janjic (MYJ) PBL scheme. We will present intercomparisons of the near surface temperature profiles, boundary layer heights, and wind obtained from the different simulations. We plan to use available temperature observations from Mini TES instrument onboard the rovers Spirit and Opportunity in evaluating the model results

Trans-Pacific Transport of Saharan Dust to Western North America: A Case Study

The first documented case of long range transport of Saharan dust over a pathway spanning Asia and the Pacific to Western North America is described. Crustal material generated by North African dust storms during the period 28 February - 3 March 2005 reached western Canada on 13-14 March 2005 and was observed by lidar and sunphotometer in the Vancouver region and by high altitude aerosol instrumentation at Whistler Peak. Global chemical models (GEOS-CHEM and NRL NAAPS) confirm the transport pathway and suggest source attribution was simplified in this case by the distinct, and somewhat unusual, lack of dust activity over Eurasia (Gobi and Takla Makan deserts) at this time. Over western North America, the dust layer, although subsiding close to the boundary layer, did not appear to contribute to boundary layer particulate matter concentrations. Furthermore, sunphotometer observations (and associated inversion products) suggest that the dust layer had only subtle optical impact (Aerosol Optical Thickness (Tau(sub a500)) and Angstrom exponent (Alpha(sub 440-870) were 0.1 and 1.2 respectively) and was dominated by fine particulate matter (modes in aerodynamic diameter at 0.3 and 2.5microns). High Altitude observations at Whistler BC, confirm the crustal origin of the layer (rich in Ca(++) ions) and the bi-modal size distribution. Although a weak event compared to the Asian Trans-Pacific dust events of 1998 and 2001, this novel case highlights the possibility that Saharan sources may contribute episodically to the aerosol burden in western North America

Toward an Integrated Solution to Mitigate the Impact of Volcanic Ash to Aviation

The science community is making a concerted effort to improve the reliability of dispersion models for the forecasting of volcanic ash plumes. Toward this end, it has been observed that the assimilation of diverse, accurate and frequent surface, airborne and satellite observations of the source and distal ash plumes may hold the key. Various international research organizations and operational agencies make these observations using a variety of active and passive remote sensing systems and use them to initialize atmospheric trajectory and dispersion models. These observation systems range from surface LIDAR and ceilometers, to airborne radiometers and nephelometers, to satellite radiometers, multi-spectral imagers, LIDAR and UV-photometers. None of these systems alone is a panacea, however, their synergistic application holds great promise toward solving this complex problem. Additionally, the aeronautical and science communities are working to better understand the quantitative thresholds and tolerances of aviation systems to volcanic ash to better inform scientists of the accuracy requirements for dispersion model forecasts. A number of the most recent and promising efforts in all of these area are discussed in this presentation

Chemical Data Assimilation Estimates of Continental US Ozone and Nitrogen Budgets during INTEX-A

Global ozone analyses, based on assimilation of stratospheric profile and ozone column measurements, and NOy predictions from the Real-time Air Quality Modeling System (RAQMS) are used to estimate the ozone and NOy budget over the Continental US during the July-August 2004 Intercontinental Chemical Transport Experiment-North America (INTEX-A). Comparison with aircraft, satellite, surface, and ozonesonde measurements collected during the INTEX-A show that RAQMS captures the main features of the global and Continental US distribution of tropospheric ozone, carbon monoxide, and NOy with reasonable fidelity. Assimilation of stratospheric profile and column ozone measurements is shown to have a positive impact on the RAQMS upper tropospheric/lower stratosphere ozone analyses, particularly during the period when SAGE III limb scattering measurements were available. Eulerian ozone and NOy budgets during INTEX-A show that the majority of the Continental US export occurs in the upper troposphere/lower stratosphere poleward of the tropopause break, a consequence of convergence of tropospheric and stratospheric air in this region. Continental US photochemically produced ozone was found to be a minor component of the total ozone export, which was dominated by stratospheric ozone during INTEX-A. The unusually low photochemical ozone export is attributed to anomalously cold surface temperatures during the latter half of the INTEX-A mission, which resulted in net ozone loss during the first 2 weeks of August. Eulerian NOy budgets are shown to be very consistent with previously published estimates. The NOy export efficiency was estimated to be 24 percent, with NOx+PAN accounting for 54 percent of the total NOy export during INTEX-A

Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)

In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. For example, a key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process versus those that measure fl ux through the autophagy pathway (i.e., the complete process including the amount and rate of cargo sequestered and degraded). In particular, a block in macroautophagy that results in autophagosome accumulation must be differentiated from stimuli that increase autophagic activity, defi ned as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (inmost higher eukaryotes and some protists such as Dictyostelium ) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the fi eld understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. It is worth emphasizing here that lysosomal digestion is a stage of autophagy and evaluating its competence is a crucial part of the evaluation of autophagic flux, or complete autophagy. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. Along these lines, because of the potential for pleiotropic effects due to blocking autophagy through genetic manipulation it is imperative to delete or knock down more than one autophagy-related gene. In addition, some individual Atg proteins, or groups of proteins, are involved in other cellular pathways so not all Atg proteins can be used as a specific marker for an autophagic process. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field