Scattering Expansion for Localization in One Dimension: from Disordered Wires to Quantum Walks

We present a perturbative approach to a broad class of disordered systems in one spatial dimension. Considering a long chain of identically disordered scatterers, we expand in the reflection strength of any individual scatterer. This expansion accesses the full range of phase disorder from weak to strong. We apply this expansion to several examples, including the Anderson model, a general class of periodic-on-average-random potentials, and a two-component discrete-time quantum walk, showing analytically in the latter case that the localization length can depend non-monotonically on the strength of phase disorder (whereas expanding in weak disorder yields monotonic decrease). Returning to the general case, we extend the perturbative derivation of single-parameter scaling to another order and obtain to all orders a particular non-separable form for the joint probability distribution of the log-transmission and reflection phase. Furthermore, we show that for weak local reflection strength, a version of the scaling theory of localization holds: the joint distribution is determined by just three parameters.Comment: 23+15 pages, 10 figures. Longer version of arXiv:2210.0799

Universal localization-delocalization transition in chirally-symmetric Floquet drives

Periodically driven systems often exhibit behavior distinct from static systems. In single-particle, static systems, any amount of disorder generically localizes all eigenstates in one dimension. In contrast, we show that in topologically non-trivial, single-particle Floquet loop drives with chiral symmetry in one dimension, a localization-delocalization transition occurs as the time $t$ is varied within the driving period ($0 \le t \le T_\text{drive}$). We find that the time-dependent localization length $L_\text{loc}(t)$ diverges with a universal exponent as $t$ approaches the midpoint of the drive: $L_\text{loc}(t) \sim (t - T_\text{drive}/2)^{-\nu}$ with $\nu=2$. We provide analytical and numerical evidence for the universality of this exponent within the AIII symmetry class.Comment: 17 + 5 pages, 7 figure

Manipulating the electronic polarization in a magnetoelectric antiferromagnet via the two-photon Stark effect

When intense light is shone through a transparent medium, the strong, time-periodic potential from the radiation field reshapes the many-body Hamiltonian. Crucially, this interaction does not involve light absorption and, in principle, does not generate any heat. The incident radiation can nonetheless be used to optically tailor various degrees of freedom, leading to the possibility of photo-controlling macroscopic properties of matter. Here, we show that when inversion symmetry is broken by the antiferromganetic spin arrangement in Cr$_2$O$_3$, transmitting linearly polarized light through the crystal gives rise to a purely electronic dipole moment by way of a two-photon Stark effect. Using interferometric time-resolved second harmonic generation, we show that the threefold rotational symmetry of the crystal is broken only while the pump pulse is present; the timescale indicates that an electronic response is generated without affecting the magnetic or crystal structures. The orientation of the induced moment depends on the incident light polarization, which allows for contact-free control of the dipole moment vector. Our results establish a dissipationless optical protocol by which to selectively polarize the electronic subsystem and provides a method to manipulate electronic symmetries in noncentrosymmetric insulators

Anatomy of the recurrent coastal sediment plume in Lake Michigan and its impacts on light climate, nutrients, and plankton

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/94624/1/jgrc9664.pd

Cryo Electron Tomography of Herpes Simplex Virus during Axonal Transport and Secondary Envelopment in Primary Neurons

During herpes simplex virus 1 (HSV1) egress in neurons, viral particles travel from the neuronal cell body along the axon towards the synapse. Whether HSV1 particles are transported as enveloped virions as proposed by the ‘married’ model or as non-enveloped capsids suggested by the ‘separate’ model is controversial. Specific viral proteins may form a recruitment platform for microtubule motors that catalyze such transport. However, their subviral location has remained elusive. Here we established a system to analyze herpesvirus egress by cryo electron tomography. At 16 h post infection, we observed intra-axonal transport of progeny HSV1 viral particles in dissociated hippocampal neurons by live-cell fluorescence microscopy. Cryo electron tomography of frozen-hydrated neurons revealed that most egressing capsids were transported independently of the viral envelope. Unexpectedly, we found not only DNA-containing capsids (cytosolic C-capsids), but also capsids lacking DNA (cytosolic A-/B-capsids) in mid-axon regions. Subvolume averaging revealed lower amounts of tegument on cytosolic A-/B-capsids than on C-capsids. Nevertheless, all capsid types underwent active axonal transport. Therefore, even few tegument proteins on the capsid vertices seemed to suffice for transport. Secondary envelopment of capsids was observed at axon terminals. On their luminal face, the enveloping vesicles were studded with typical glycoprotein-like spikes. Furthermore, we noted an accretion of tegument density at the concave cytosolic face of the vesicle membrane in close proximity to the capsids. Three-dimensional analysis revealed that these assembly sites lacked cytoskeletal elements, but that filamentous actin surrounded them and formed an assembly compartment. Our data support the ‘separate model’ for HSV1 egress, i.e. progeny herpes viruses being transported along axons as subassemblies and not as complete virions within transport vesicles

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe

A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers

Breast cancer (BC) risk for BRCA1 and BRCA2 mutation carriers varies by genetic and familial factors. About 50 common variants have been shown to modify BC risk for mutation carriers. All but three, were identified in general population studies. Other mutation carrier-specific susceptibility variants may exist but studies of mutation carriers have so far been underpowered. We conduct a novel case-only genome-wide association study comparing genotype frequencies between 60,212 general population BC cases and 13,007 cases with BRCA1 or BRCA2 mutations. We identify robust novel associations for 2 variants with BC for BRCA1 and 3 for BRCA2 mutation carriers, P < 10−8, at 5 loci, which are not associated with risk in the general population. They include rs60882887 at 11p11.2 where MADD, SP11 and EIF1, genes previously implicated in BC biology, are predicted as potential targets. These findings will contribute towards customising BC polygenic risk scores for BRCA1 and BRCA2 mutation carriers

Síntese de trans-resveratrol e controle de podridão em maçãs com uso de elicitores em pós-colheita Synthesis of trans-resveratrol and rotting control in apples with use of elicitors in post-harvest

O objetivo deste trabalho foi avaliar o efeito da aplicação de elicitores abióticos na biossíntese de resveratrol e na indução de resistência à podridão póscolheita de maçãs 'Gala' e 'Fuji'. Foram realizados os tratamentos: radiação ultravioleta, fosfito e acibenzolar-Smetil - aplicados antes do armazenamento - e ozônio - aplicado intermitente durante o armazenamento. As condições de armazenamento foram: 'Gala', 1,5 kPa de O2 e 2,5 kPa de CO2, a 0,5±0,1ºC, por oito meses, e 'Fuji', 1,0 kPa de O2 e <0,5 kPa de CO2, a 0,5±0,1ºC, por sete meses. O delineamento experimental foi inteiramente ao acaso, com oito repetições de 25 frutos. Na casca dos frutos, determinou-se: trans-resveratrol, polifenóis totais, antocianinas totais e diâmetro de lesão, após inoculação de Penicillium sp. no ferimento. Analisou-se na polpa: firmeza de polpa, acidez titulável, sólidos solúveis totais, açúcares redutores e nãoredutores. Os elicitores não alteram a concentração de polifenóis totais e antocianinas, com exceção do acibenzolar-Smetil que reduz o conteúdo de antocianinas na maçã 'Gala'. Os elicitores induzem, na 'Fuji', mas não na maçã 'Gala', a síntese de trans-resveratrol na seqüência: acibenzolar-Smetil> fosfito> irradiação UV-C> ozônio. Na maçã 'Gala', o fosfito reduz a ocorrência de podridão, porém, em ambas as cultivares, não há correlação entre síntese de trans-resveratrol e controle de podridão.<br>The objective of this study was evaluate the effect of the application of abiotic elicitors of resveratrol in 'Gala' and 'Fuji' apples, and rotting control. The treatment was with ultraviolet irradiation, phosphite and acibenzolar-Smethyl, applied before controlled atmosphere storage and ozone, applied so intermittently during storage. The storage conditions were: 'Gala' (1.5 kPa O2 and 2.5 kPa CO2, at 0.5±0.1°C by eight months) and 'Fuji' (1.0 kPa O2 and <0.5 kPa CO2, at 0.5±0.1°C for seven months). The experimental design was a completely randomized with eight repetitions of 25 fruits. In the skin of fruit trans-resveratrol were analyzed by high performance liquid chromatography; total polyphenols and anthocyanins by spectrophotometry and diameter of injury after inoculation by Penicillium sp. Firmness, acidity, total soluble solids, and reducing and nonreducing sugars were analyzed in the flesh. The elicitores do not change the concentration of phenols and anthocyanins, with the exception of the loss of total anthocyanins with acibenzolar-Smethyl in 'Gala' apple. The elicitors induce in 'Fuji' apples the synthesis of trans-resveratrol in the sequence: acibenzolar-Smethyl>phosphite>UV-C irradiation>ozone. There isn't correlation between synthesis of trans-resveratrol and rotting control, but the phosphite controlled rot in 'Gala'