Reconstruction of bacterial transcription-coupled repair at single-molecule resolution

International audienc

The presence of two UvrB subunits in the UvrAB complex ensures damage detection in both DNA strands

It is generally accepted that the damage recognition complex of nucleotide excision repair in Escherichia coli consists of two UvrA and one UvrB molecule, and that in the preincision complex UvrB binds to the damage as a monomer. Using scanning force microscopy, we show here that the damage recognition complex consists of two UvrA and two UvrB subunits, with the DNA wrapped around one of the UvrB monomers. Upon binding the damage and release of the UvrA subunits, UvrB remains a dimer in the preincision complex. After association with the UvrC protein, one of the UvrB monomers is released. We propose a model in which the presence of two UvrB subunits ensures damage recognition in both DNA strands. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one of the UvrB monomers, which will subsequently probe one of the DNA strands for the presence of a lesion. When no damage is found, the DNA will wrap around the second UvrB subunit, which will check the other strand for aberrations

Ecological Restoration as a Means of Managing Inland Flood Hazards

Many streams and rivers experience major floods. Historically, human societies have responded to such floods by moving away from them or by abating them, the latter with large negative impacts on stream and river ecology. Societies are currently implementing a strategy of “living with floods,” which may involve ecological restoration. It further involves flood mapping, forecasting, and warning systems. We evaluate 14 different stream- and river-restoration measures, which differ in their capacity to modify water retention and runoff. We discuss these restoration measures in the light of predicted changes in climate and flooding and discuss future restoration needs. We focus on the Nordic countries, where substantial changes in the water cycle are foreseen. We conclude that sustainable solutions require researchers to monitor the effect of flood management and study the relative importance of individual restoration measures, as well as the side effects of flood attenuation