12 research outputs found
Mutations in Zebrafish lrp2 Result in Adult-Onset Ocular Pathogenesis That Models Myopia and Other Risk Factors for Glaucoma
The glaucomas comprise a genetically complex group of retinal neuropathies that typically occur late in life and are characterized by progressive pathology of the optic nerve head and degeneration of retinal ganglion cells. In addition to age and family history, other significant risk factors for glaucoma include elevated intraocular pressure (IOP) and myopia. The complexity of glaucoma has made it difficult to model in animals, but also challenging to identify responsible genes. We have used zebrafish to identify a genetically complex, recessive mutant that shows risk factors for glaucoma including adult onset severe myopia, elevated IOP, and progressive retinal ganglion cell pathology. Positional cloning and analysis of a non-complementing allele indicated that non-sense mutations in low density lipoprotein receptor-related protein 2 (lrp2) underlie the mutant phenotype. Lrp2, previously named Megalin, functions as an endocytic receptor for a wide-variety of bioactive molecules including Sonic hedgehog, Bone morphogenic protein 4, retinol-binding protein, vitamin D-binding protein, and apolipoprotein E, among others. Detailed phenotype analyses indicated that as lrp2 mutant fish age, many individuals—but not all—develop high IOP and severe myopia with obviously enlarged eye globes. This results in retinal stretch and prolonged stress to retinal ganglion cells, which ultimately show signs of pathogenesis. Our studies implicate altered Lrp2-mediated homeostasis as important for myopia and other risk factors for glaucoma in humans and establish a new genetic model for further study of phenotypes associated with this disease
DEVELOPMENT AND PERFORMANCE OF AN IN-WHEEL SUSPENSION CONCEPT WITH AN INTEGRATED E-DRIVE
In the presented paper the development of a suspension for electrically driven vehicles is shown. The suspension is developed through the application of a methodical procedure model that was previously developed at the German Aerospace Centre. The process model addresses the altered boundary conditions brought by electrification and the development of road vehicle suspensions suited to the requirements of electro mobility is enabled. One of those suspensions created with the help of the process model is the LEICHT, an innovative suspension for urban vehicles. LEICHT stands for the main characteristics of the in-wheel suspension: Lightweight, Energy-efficient, and Integrative Chassis with Hub-motor Technology
Optic nerve astrocyte reactivity protects function in experimental glaucoma and other nerve injuries
Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.13.1
0.13.1 (May 20, 2017)
FIX: Make release compatible with conda-forge build process (https://github.com/nipy/nipype/pull/2017)
ENH: Update some minimum versions in compliance with Debian Jessie (https://github.com/nipy/nipype/pull/2017)
ENH: Circle builds use cached docker layers (https://github.com/nipy/nipype/pull/2017)
ENH: Base docker to use FS6 and ANTS 2.2.0 (https://github.com/nipy/nipype/pull/2024)
FIX: Mailmap and contributor acknowledgment (https://github.com/nipy/nipype/pull/2017)
FIX: Preserve node properties in sub nodes of MapNode (https://github.com/nipy/nipype/pull/2019)
FIX: Fix interfaces 3DUnifize, ICA_AROMA, BinaryMaths, RegAverage, BBRegister, AffineInitializer (https://github.com/nipy/nipype/pull/2025, https://github.com/nipy/nipype/pull/2027, https://github.com/nipy/nipype/pull/2036, https://github.com/nipy/nipype/pull/2037, https://github.com/nipy/nipype/pull/2031, https://github.com/nipy/nipype/pull/2010)
ENH: Add Anisotropic Power interface (https://github.com/nipy/nipype/pull/2039)
FIX: Bayesian estimation in SPM (https://github.com/nipy/nipype/pull/2030)
0.13.0 (May 11, 2017)
ENH: Multi-stage recon-all directives (https://github.com/nipy/nipype/pull/1991)
FIX: FEAT "folder does not exist" error (https://github.com/nipy/nipype/pull/2000)
ENH: Niftyfit interfaces (https://github.com/nipy/nipype/pull/1910)
FIX: Define ANTSPATH for BrainExtraction automatically (https://github.com/nipy/nipype/pull/1986)
ENH: New trait for imaging files (https://github.com/nipy/nipype/pull/1949)
ENH: Niftyseg interfaces (https://github.com/nipy/nipype/pull/1911)
ENH: Niftyreg interfaces (https://github.com/nipy/nipype/pull/1913)
MRG: Allow more support for CLI (https://github.com/nipy/nipype/pull/1908)
ENH: 3dQwarpPlusMinus interface (https://github.com/nipy/nipype/pull/1974)
FIX: PY3.6 support (https://github.com/nipy/nipype/pull/1977)
FIX: PY3 and stream fixes for MRTrix2TrackVis (https://github.com/nipy/nipype/pull/1804)
ENH: More mask options for CompCor interfaces (https://github.com/nipy/nipype/pull/1968 + https://github.com/nipy/nipype/pull/1992)
ENH: Additional TOPUP outputs (https://github.com/nipy/nipype/pull/1976)
ENH: Additional Eddy flags (https://github.com/nipy/nipype/pull/1967)
ENH: ReconAll handlers for less common cases (https://github.com/nipy/nipype/pull/1966)
ENH: FreeSurferSource now finds graymid/midthickness surfs (https://github.com/nipy/nipype/pull/1972)
ENH: Additional fslmaths dimensional reduction operations (https://github.com/nipy/nipype/pull/1956)
ENH: More options for RobustFOV interface (https://github.com/nipy/nipype/pull/1923)
ENH: Add MRIsCombine to FreeSurfer utils (https://github.com/nipy/nipype/pull/1948)
FIX: Level1Design EV parameter substitution (https://github.com/nipy/nipype/pull/1953)
FIX: Dcm2niix outputs can be uncompressed (https://github.com/nipy/nipype/pull/1951)
FIX: Ensure build fails in Circle when tests fail (https://github.com/nipy/nipype/pull/1981)
ENH: Add interface to antsAffineInitializer (https://github.com/nipy/nipype/pull/1980)
ENH: AFNI motion parameter support for FrameWiseDisplacement (https://github.com/nipy/nipype/pull/1840)
ENH: Add ANTs KellyKapowski interface (https://github.com/nipy/nipype/pull/1845)
FIX: AFNI interface bug setting OMP_NUM_THREADS to 1 (https://github.com/nipy/nipype/pull/1728)
FIX: Select Eddy run command at runtime (https://github.com/nipy/nipype/pull/1871)
FIX: Increase FLIRT's flexibility with apply_xfm (https://github.com/nipy/nipype/pull/1875)
DOC: Update FSL preprocess docstrings (https://github.com/nipy/nipype/pull/1881)
ENH: Support GIFTI outputs in SampleToSurface (https://github.com/nipy/nipype/pull/1886)
FIX: Configparser differences between PY2 and PY3 (https://github.com/nipy/nipype/pull/1890)
ENH: Add mris_expand interface (https://github.com/nipy/nipype/pull/1893)
FIX: Split over-eager globs in FreeSurferSource (https://github.com/nipy/nipype/pull/1894)
FIX: Store undefined by default so that xor checks don't trip (https://github.com/nipy/nipype/pull/1903)
FIX: Gantt chart generator PY3 compatibility (https://github.com/nipy/nipype/pull/1907)
FIX: Add DOF and --fsl-dof options to BBRegister (https://github.com/nipy/nipype/pull/1917)
ENH: Auto-derive input_names in Function (https://github.com/nipy/nipype/pull/1918)
FIX: Minor fixes for NonSteadyStateDetector (https://github.com/nipy/nipype/pull/1926)
DOC: Add duecredit references for AFNI and FSL (https://github.com/nipy/nipype/pull/1930)
ENH: Added zenodo (https://zenodo.org/) file (https://github.com/nipy/nipype/pull/1924)
ENH: Disable symlinks on CIFS filesystems (https://github.com/nipy/nipype/pull/1941)
ENH: Sphinx extension to plot workflows (https://github.com/nipy/nipype/pull/1896)
ENH: Added non-steady state detector for EPI data (https://github.com/nipy/nipype/pull/1839)
ENH: Enable new BBRegister init options for FSv6+ (https://github.com/nipy/nipype/pull/1811)
REF: Splits nipype.interfaces.utility into base, csv, and wrappers (https://github.com/nipy/nipype/pull/1828)
FIX: Makespec now runs with nipype in current directory (https://github.com/nipy/nipype/pull/1813)
FIX: Flexible nifti opening with mmap if Numpy < 1.12.0 (https://github.com/nipy/nipype/pull/1796 + https://github.com/nipy/nipype/pull/1831)
ENH: DVARS includes intensity normalization feature - turned on by default (https://github.com/nipy/nipype/pull/1827)
FIX: DVARS is correctly using sum of squares instead of standard deviation (https://github.com/nipy/nipype/pull/1827)
ENH: Refactoring of nipype.interfaces.utility (https://github.com/nipy/nipype/pull/1828)
FIX: CircleCI were failing silently. Some fixes to tests (https://github.com/nipy/nipype/pull/1833)
FIX: Issues in Docker image permissions, and docker documentation (https://github.com/nipy/nipype/pull/1825)
ENH: Revised all Dockerfiles and automated deployment to Docker Hub from CircleCI (https://github.com/nipy/nipype/pull/1815)
ENH: Update ReconAll interface for FreeSurfer v6.0.0 (https://github.com/nipy/nipype/pull/1790)
FIX: Cast DVARS float outputs to avoid memmap error (https://github.com/nipy/nipype/pull/1777)
FIX: FSL FNIRT intensity mapping files (https://github.com/nipy/nipype/pull/1799)
ENH: Additional outputs generated by FSL EDDY (https://github.com/nipy/nipype/pull/1793)
TST: Parallelize CircleCI build across 4 containers (https://github.com/nipy/nipype/pull/1769)
0.13.0-rc1 (January 4, 2017)
FIX: Compatibility with traits 4.6 (https://github.com/nipy/nipype/pull/1770)
FIX: Multiproc deadlock (https://github.com/nipy/nipype/pull/1756)
TST: Replace nose and unittest with pytest (https://github.com/nipy/nipype/pull/1722, https://github.com/nipy/nipype/pull/1751)
FIX: Semaphore capture using MultiProc plugin (https://github.com/nipy/nipype/pull/1689)
REF: Refactor AFNI interfaces (https://github.com/nipy/nipype/pull/1678, https://github.com/nipy/nipype/pull/1680)
ENH: Move nipype commands to group command using click (https://github.com/nipy/nipype/pull/1608)
FIX: AFNI Retroicor interface fixes (https://github.com/nipy/nipype/pull/1669)
FIX: Minor errors after migration to setuptools (https://github.com/nipy/nipype/pull/1671)
ENH: Add AFNI 3dNote interface (https://github.com/nipy/nipype/pull/1637)
ENH: Abandon distutils, only use setuptools (https://github.com/nipy/nipype/pull/1627)
FIX: Minor bugfixes related to unicode literals (https://github.com/nipy/nipype/pull/1656)
TST: Automatic retries in travis (https://github.com/nipy/nipype/pull/1659/files)
ENH: Add signal extraction interface (https://github.com/nipy/nipype/pull/1647)
ENH: Add a DVARS calculation interface (https://github.com/nipy/nipype/pull/1606)
ENH: New interface to b0calc of FSL-POSSUM (https://github.com/nipy/nipype/pull/1399)
ENH: Add CompCor (https://github.com/nipy/nipype/pull/1599)
ENH: Add duecredit entries (https://github.com/nipy/nipype/pull/1466)
FIX: Python 3 compatibility fixes (https://github.com/nipy/nipype/pull/1572)
REF: Improved PEP8 compliance for fsl interfaces (https://github.com/nipy/nipype/pull/1597)
REF: Improved PEP8 compliance for spm interfaces (https://github.com/nipy/nipype/pull/1593)
TST: Replaced coveralls with codecov (https://github.com/nipy/nipype/pull/1609)
ENH: More BrainSuite interfaces (https://github.com/nipy/nipype/pull/1554)
ENH: Convenient load/save of interface inputs (https://github.com/nipy/nipype/pull/1591)
ENH: Add a Framewise Displacement calculation interface (https://github.com/nipy/nipype/pull/1604)
FIX: Use builtins open and unicode literals for py3 compatibility (https://github.com/nipy/nipype/pull/1572)
TST: reduce the size of docker images & use tags for images (https://github.com/nipy/nipype/pull/1564)
ENH: Implement missing inputs/outputs in FSL AvScale (https://github.com/nipy/nipype/pull/1563)
FIX: Fix symlink test in copyfile (https://github.com/nipy/nipype/pull/1570, https://github.com/nipy/nipype/pull/1586)
ENH: Added support for custom job submission check in SLURM (https://github.com/nipy/nipype/pull/1582)
ENH: Added ANTs interface CreateJacobianDeterminantImage; replaces deprecated JacobianDeterminant (https://github.com/nipy/nipype/pull/1654