73 research outputs found
Scolding the child who threw the scissors:Shaping discourse expectations by restricting referents
Coherence relations are often assumed to hold between clauses, but restrictive relative clauses (RCs) are usually not granted discourse segment status because they are syntactically and conceptually integrated in their matrix clauses. This paper investigates whether coherence relations can be inferred between restrictive RCs and their matrix clauses. Three experiments provide converging evidence that restrictive RCs can indeed play a role at the discourse level and should not categorically be excluded from receiving discourse segment status in discourse annotation practices. At the same time, the studies provide new insights into implicit causality verb biases, specifically about next-mention biases in concessive coherence relations, and expectations about discourse structure, upcoming referents, and upcoming coherence relations
Designing Medical Technology for the Developing World
Our goal is to develop healthcare solutions that can be implemented in developing countries to reduce their dependence on donated medical equipment. We have focused on several devices: a monitor for premature babies, a bacterial sensor for infection diagnoses and water testing, and an infant automated breathing bag device to maintain breathing in newborns. Our designs minimize the use of consumables and provide better detection and/or treatment than currently available in-country. The baby monitor detects skin temperature and controls an electric warming blanket. The bacterial sensor quickly detects the bacteria in a sample without the need for lengthy culture times. The infant breathing device provides regular breathing support to newborns, relieving family from having to manually support breathing. All of our projects seek to answer critical medical needs in developing regions through reductions in costs, time, or both. Our group is partnering with local governments in Tanzania and Mexico to collaborate on our projects and work to accomplish the specific needs of these communities. These projects are partially supported by the Creative Inquiry program
I Don\u27t Belong with All the Really Smart Kids Here : Student Characterizations of Belonging in Engineering
This research paper is a qualitative study of how students with diverse demographics, mindsets, and identities describe what it means to belong in engineering. Engineering students’ sense of belonging has a significant impact on students’ decisions to leave engineering. Talented students who feel that they do not belong in engineering are more likely to leave than their peers. Previous studies have focused on belonging for underrepresented students in engineering (e.g., women or minorities) or specific factors contributing to student belonging (e.g., classroom performance). However, few have explored how students describe what it means for them to belong in engineering to understand how this attitude may be formed and internalized by diverse students. To address this gap, thirty-five interviews were conducted with first-year engineering students at four universities under a semi-structured interview protocol to learn about students’ experiences and perceptions of engineering. Interview transcripts were analyzed using inductive and deductive thematic coding to develop broader themes about how a diverse set of undergraduate students describe their sense of belonging in engineering. Student responses were compared to one another while being sensitive to potential differences in students’ demographic or latent diversity (i.e., mindsets, beliefs, and values). Emerging results show differences in how students evaluate belonging relative to their peers. This research can inform and influence engineering faculty to serve students holistically by understanding how students describe belongingness and provides actionable implications to develop and support their sense of belonging. These efforts may support student retention of diverse students across engineering
Standard Business Reporting (SBR) Adoption in Australia, Critically Acclaimed, Box Office Flop: Constructivist and Ecological Rationalities in Information Systems (IS) Adoption
IS enables organizations to improve their productivity, streamline their business processes, and better understand the challenges and opportunities facing their business. These benefits can further accrue to individuals and organizations when they adopt and use the systems. While the benefits of IS are multifarious, IS adoption remains challenging. The far-reaching consequences of IS motivate research examining the antecedents of successful IS adoption both at individual and organizational levels. To examine the complexity of IS adoption, we undertook an interpretive case study of SBR adoption in Australia. We contend that SBR's context in Australia offers distinctive perspectives on the complexity of IS adoption. We found that IS adoption decisions can be based on both constructivist and ecological rationalities. Our findings can provide insight in improving understanding of the benefits of SBR and have implications for companies, regulators, standard setters, and the accounting profession, more generally
Insecticide monitoring in cattle dip with an e-nose system and room temperature screen-printed ZnO gas sensors
DATA AVAILABILITY: The sensor readout data for the e-nose with commercial sensors and the screen printed ZnO sensors are available at Rohde, Archibald Wishard (2023), “Data for “Insecticide Monitoring in Cattle Dip with an E-Nose System and Room Temperature Screen-Printed ZnO Gas Sensors”.”, Mendeley Data, V2, doi: 10.17632/pfs488kjyg.2.Taktic, an Amitraz-based insecticide, is commonly used in sub-Saharan Africa to treat cattle for ticks. Due to misuse in rural dipping pools, some ticks are showing resistance to Taktic. This work presents a low-cost e-nose with commercial sensors to monitor Taktic levels in dipping pool water. The device shows distinctly different measurements for the odours of air, distilled water, farm water, and four levels of Taktic insecticide in farm water. A naive Bayes algorithm with a Gaussian distribution is trained on the data and a validation set achieves a 96.5% accuracy. This work also compares two sol-gel ZnO nanoparticle solutions with an off-the-shelf ZnO nanoparticle ink for use as active material in chemiresistive gas sensors to be employed in an e-nose array. The ZnO solutions are screen-printed onto gold electrodes, auto-sintered with a built in heater, and used with UV illumination to operate as low-power, room temperature gas sensors. All of the screen-printed ZnO sensors show distinct changes in resistance when exposed to Taktic vapours under room temperature and humidity conditions. The custom room temperature ZnO gas sensors fabricated via facile and low-cost processes are suitable for future integration in a point-of-need microsystem for the detection of Taktic in water.National Research Foundation,https://www.mdpi.com/journal/agricultureElectrical, Electronic and Computer EngineeringPhysic
Roles played by community cadres to support retention in PMTCT Option B+ in four African countries: a qualitative rapid appraisal
OBJECTIVES To explore the roles of community cadres
in improving access to and retention in care for PMTCT
(prevent mother-to-child transmission of HIV) services
in the context of PMTCT Option B+ treatment scale-up
in high burden low-income and lower-middle income
countries.
DESIGN/METHODS Qualitative rapid appraisal study
design using semistructured in-depth interviews and
focus group discussions (FGDs) between 8 June and 31
July 2015.
SETTING AND PARTICIPANTS Interviews were conducted
in the offices of Ministry of Health Staff, Implementing
partners, district offices and health facility sites across
four low-income and lower-middle income countries: Cote
D’Ivoire, Democratic Republic of Congo (DRC), Malawi and
Uganda. A range of individual interviews and FGDs with
key stakeholders including Ministry of Health employees,
Implementation partners, district management teams,
facility-based health workers and community cadres. A
total number of 18, 28, 31 and 83 individual interviews
were conducted in Malawi, Cote d’Ivoire, DRC and Uganda,
respectively. A total number of 15, 9, 10 and 16 mixed
gender FGDs were undertaken in Malawi, Cote d’Ivoire,
DRC and Uganda, respectively.
RESULTS Community cadres either operated solely
in the community, worked from health centres or in
combination and their mandates were PMTCT-specific
or included general HIV support and other health issues.
Community cadres included volunteers, those supported
by implementing partners or employed directly by the
Ministry of Health. Their complimentary roles along the
continuum of HIV care and treatment include demand
creation, household mapping of pregnant and lactating
women, linkage to care, infant follow-up and adherence
and retention support.
CONCLUSIONS Community cadres provide an integral link
between communities and health facilities, supporting
overstretched health workers in HIV client support and
follow-up. However, their role in health systems is neither
standardised nor systematic and there is an urgent need to
invest in the standardisation of and support to community
cadres to maximise potential health impacts
Genomic epidemiology of a protracted hospital outbreak caused by multidrug-resistant Acinetobacter baumannii in Birmingham, England
BACKGROUND: Multidrug-resistant Acinetobacter baumannii commonly causes hospital outbreaks. However, within an outbreak, it can be difficult to identify the routes of cross-infection rapidly and accurately enough to inform infection control. Here, we describe a protracted hospital outbreak of multidrug-resistant A. baumannii, in which whole-genome sequencing (WGS) was used to obtain a high-resolution view of the relationships between isolates. METHODS: To delineate and investigate the outbreak, we attempted to genome-sequence 114 isolates that had been assigned to the A. baumannii complex by the Vitek2 system and obtained informative draft genome sequences from 102 of them. Genomes were mapped against an outbreak reference sequence to identify single nucleotide variants (SNVs). RESULTS: We found that the pulsotype 27 outbreak strain was distinct from all other genome-sequenced strains. Seventy-four isolates from 49 patients could be assigned to the pulsotype 27 outbreak on the basis of genomic similarity, while WGS allowed 18 isolates to be ruled out of the outbreak. Among the pulsotype 27 outbreak isolates, we identified 31 SNVs and seven major genotypic clusters. In two patients, we documented within-host diversity, including mixtures of unrelated strains and within-strain clouds of SNV diversity. By combining WGS and epidemiological data, we reconstructed potential transmission events that linked all but 10 of the patients and confirmed links between clinical and environmental isolates. Identification of a contaminated bed and a burns theatre as sources of transmission led to enhanced environmental decontamination procedures. CONCLUSIONS: WGS is now poised to make an impact on hospital infection prevention and control, delivering cost-effective identification of routes of infection within a clinically relevant timeframe and allowing infection control teams to track, and even prevent, the spread of drug-resistant hospital pathogens
A Bovine Model of Respiratory Chlamydia psittaci Infection: Challenge Dose Titration
This study aimed to establish and evaluate a bovine respiratory model of experimentally induced acute C. psittaci infection. Calves are natural hosts and pathogenesis may resemble the situation in humans. Intrabronchial inoculation of C. psittaci strain DC15 was performed in calves aged 2–3 months via bronchoscope at four different challenge doses from 106 to 109 inclusion-forming units (ifu) per animal. Control groups received either UV-inactivated C. psittaci or cell culture medium. While 106 ifu/calf resulted in a mild respiratory infection only, the doses of 107 and 108 induced fever, tachypnea, dry cough, and tachycardia that became apparent 2–3 days post inoculation (dpi) and lasted for about one week. In calves exposed to 109 ifu C. psittaci, the respiratory disease was accompanied by severe systemic illness (apathy, tremor, markedly reduced appetite). At the time point of most pronounced clinical signs (3 dpi) the extent of lung lesions was below 10% of pulmonary tissue in calves inoculated with 106 and 107 ifu, about 15% in calves inoculated with 108 and more than 30% in calves inoculated with 109 ifu C. psittaci. Beside clinical signs and pathologic lesions, the bacterial load of lung tissue and markers of pulmonary inflammation (i.e., cell counts, concentration of proteins and eicosanoids in broncho-alveolar lavage fluid) were positively associated with ifu of viable C. psittaci. While any effect of endotoxin has been ruled out, all effects could be attributed to infection by the replicating bacteria. In conclusion, the calf represents a suitable model of respiratory chlamydial infection. Dose titration revealed that both clinically latent and clinically manifest infection can be reproduced experimentally by either 106 or 108 ifu/calf of C. psittaci DC15 while doses above 108 ifu C. psittaci cannot be recommended for further studies for ethical reasons. This defined model of different clinical expressions of chlamydial infection allows studying host-pathogen interactions
Minimal information for studies of extracellular vesicles 2018 (MISEV2018):a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines
The last decade has seen a sharp increase in the number of scientific publications describing physiological and pathological functions of extracellular vesicles (EVs), a collective term covering various subtypes of cell-released, membranous structures, called exosomes, microvesicles, microparticles, ectosomes, oncosomes, apoptotic bodies, and many other names. However, specific issues arise when working with these entities, whose size and amount often make them difficult to obtain as relatively pure preparations, and to characterize properly. The International Society for Extracellular Vesicles (ISEV) proposed Minimal Information for Studies of Extracellular Vesicles (“MISEV”) guidelines for the field in 2014. We now update these “MISEV2014” guidelines based on evolution of the collective knowledge in the last four years. An important point to consider is that ascribing a specific function to EVs in general, or to subtypes of EVs, requires reporting of specific information beyond mere description of function in a crude, potentially contaminated, and heterogeneous preparation. For example, claims that exosomes are endowed with exquisite and specific activities remain difficult to support experimentally, given our still limited knowledge of their specific molecular machineries of biogenesis and release, as compared with other biophysically similar EVs. The MISEV2018 guidelines include tables and outlines of suggested protocols and steps to follow to document specific EV-associated functional activities. Finally, a checklist is provided with summaries of key points
Shifting the limits in wheat research and breeding using a fully annotated reference genome
Introduction:
Wheat (Triticum aestivum L.) is the most widely cultivated crop on Earth, contributing about a fifth of the total calories consumed by humans. Consequently, wheat yields and production affect the global economy, and failed harvests can lead to social unrest. Breeders continuously strive to develop improved varieties by fine-tuning genetically complex yield and end-use quality parameters while maintaining stable yields and adapting the crop to regionally specific biotic and abiotic stresses.
Rationale:
Breeding efforts are limited by insufficient knowledge and understanding of wheat biology and the molecular basis of central agronomic traits. To meet the demands of human population growth, there is an urgent need for wheat research and breeding to accelerate genetic gain as well as to increase and protect wheat yield and quality traits. In other plant and animal species, access to a fully annotated and ordered genome sequence, including regulatory sequences and genome-diversity information, has promoted the development of systematic and more time-efficient approaches for the selection and understanding of important traits. Wheat has lagged behind, primarily owing to the challenges of assembling a genome that is more than five times as large as the human genome, polyploid, and complex, containing more than 85% repetitive DNA. To provide a foundation for improvement through molecular breeding, in 2005, the International Wheat Genome Sequencing Consortium set out to deliver a high-quality annotated reference genome sequence of bread wheat.
Results:
An annotated reference sequence representing the hexaploid bread wheat genome in the form of 21 chromosome-like sequence assemblies has now been delivered, giving access to 107,891 high-confidence genes, including their genomic context of regulatory sequences. This assembly enabled the discovery of tissue- and developmental stage–related gene coexpression networks using a transcriptome atlas representing all stages of wheat development. The dynamics of change in complex gene families involved in environmental adaptation and end-use quality were revealed at subgenome resolution and contextualized to known agronomic single-gene or quantitative trait loci. Aspects of the future value of the annotated assembly for molecular breeding and research were exemplarily illustrated by resolving the genetic basis of a quantitative trait locus conferring resistance to abiotic stress and insect damage as well as by serving as the basis for genome editing of the flowering-time trait.
Conclusion:
This annotated reference sequence of wheat is a resource that can now drive disruptive innovation in wheat improvement, as this community resource establishes the foundation for accelerating wheat research and application through improved understanding of wheat biology and genomics-assisted breeding. Importantly, the bioinformatics capacity developed for model-organism genomes will facilitate a better understanding of the wheat genome as a result of the high-quality chromosome-based genome assembly. By necessity, breeders work with the genome at the whole chromosome level, as each new cross involves the modification of genome-wide gene networks that control the expression of complex traits such as yield. With the annotated and ordered reference genome sequence in place, researchers and breeders can now easily access sequence-level information to precisely define the necessary changes in the genomes for breeding programs. This will be realized through the implementation of new DNA marker platforms and targeted breeding technologies, including genome editing
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