Under pressure: Abies pinsapo Boiss, queen of the response to high temperature and water stress.

The Spanish fir (Abies pinsapo Boiss) is an ecologically and economically important conifer species, but little is known about its molecular responses to abiotic stresses related to climate change. The study of molecular responses in conifers faces challenges, including the lack of a complete genome and standardised protocols for handling of biological samples. Our group recently achieved the complete transcriptome assembly of A. pinsapo (Ortigosa et al. 2022), enabling functional genomic studies in this species. The objective of this work is to identify gene families related to the response to increased temperature and water stress in A. pinsapo. Initially, we focused our studies on LEA proteins (late embryogenesis abundant), dehydrins and HSPs (heat shock proteins) which are known to play important roles in stress responses in other species. We identified candidate genes and studied their differential expression patterns in various tissues of individuals from two geographical areas characterised by varying environmental conditions. Our results contribute to a better understanding of the molecular mechanisms that govern the response to abiotic stress in A. pinsapo and provide important information for the sustainability of natural and forest ecosystems in the south of the Iberian Peninsula which are vulnerable to the impact of climate change.Universidad de Málaga. Campus de Excelencia Internacional Andalucía Tech

Bajo estrés: búsqueda de genes relacionados con la respuesta al aumento de la temperatura y déficit hídrico en Abies pinsapo Boiss

El pinsapo (Abies pinsapo Boiss) es un árbol perteneciente a las coníferas, grupo que incluye especies de gran relevancia ecológica y económica. Actualmente, poco se conoce sobre su capacidad de resiliencia frente a los efectos del cambio climático, sin embargo, se sabe que las respuestas a nivel molecular ante un estrés ambiental involucran la expresión diferencial de numerosos genes en diferentes tipos celulares. El estudio de los mecanismos que rigen la adaptación y supervivencia de coníferas como el pinsapo se ha visto limitado por la falta de conocimientos básicos de sus genomas y por la baja disponibilidad de herramientas analíticas apropiadas. Recientemente, nuestro grupo ha conseguido el ensamblaje “de novo” del transcriptoma del pinsapo, proporcionando un amplio catálogo de genes (22.769) que se expresan en diferentes tejidos, de los cuales una elevada proporción (55%) son transcritos de longitud compleja (Ortigosa et al. 2022). Este recurso genómico ha permitido iniciar estudios de genómica funcional en esta especie para la caracterización de genes potencialmente implicados en la respuesta a estreses provocados por el cambio climático. En este trabajo se han realizado búsquedas de redes de genes involucrados en la respuesta al aumento de temperatura y el estrés hídrico. Entre los candidatos encontramos las proteínas LEA (late embryogenesis abundant) (Abdul et al. 2021), las deshidrinas (Sun et al. 2021) y las proteínas HSP (heat shock protein) (Jacob et al. 2017). Además, se han analizado los perfiles transcriptómicos de los genes de interés y se han establecido perfiles de expresión bajo diferentes condiciones ambientales. Esta información es de gran importancia para la sostenibilidad de ecosistemas naturales y forestales, y de relevancia ecológica para las montañas del sur de la península ibérica, vulnerables al impacto del cambio climático.Universidad de Málaga. Campus de Excelencia Internacional Andalucía Tech

Organizaciones Agrarias y Cooperativas: Transformaciones en trabajo, producción, y acceso a la tierra en Misiones. 16H351

Las actividades agropecuarias en Misiones, vienen sufriendo profundas transformaciones que impactan de manera diferencial sobre los trabajadores y sobre los productores agrarios, pero también en el proceso manufacturero y de comercialización. Con el objetivo de identificar y analizar éstas transformaciones recientes, intentaremos generar conocimiento sobre cambios productivos y en la organización del trabajo en encadenamientos agroindustriales del té y la yerba mate, relevar las estrategias económicas de las cooperativas agroindustriales, identificando sus particularidades respecto a la organización del trabajo, a las modalidades de incorporación de tecnologías y normas de calidad, y en relación con las políticas públicas. También investigaremos la incidencia de organizaciones de productores agrarios sobre los cambios en la implementación de políticas agropecuarias, en especial respecto a la producción, comercialización de alimentos y acceso a la tierra. Considerando las interacciones complejas en las transformaciones en curso, al mismo tiempo las limitaciones contextuales y las estrategias de los actores, exploraremos canales de circulación de insumos y de productos, mecanismos de fijación de precios, para analizar relaciones económicas y de poder, así como transferencias entre los distintos sectores. Desde una perspectiva metodológica cualitativa, tomaremos algunas experiencias de producción y comercialización, por parte de pequeños productores en forma asociativa, como referencia empírica para reflexionar sobre las posibilidades y dificultades de las organizaciones agrarias

Antimicrobial resistance among migrants in Europe: a systematic review and meta-analysis

BACKGROUND: Rates of antimicrobial resistance (AMR) are rising globally and there is concern that increased migration is contributing to the burden of antibiotic resistance in Europe. However, the effect of migration on the burden of AMR in Europe has not yet been comprehensively examined. Therefore, we did a systematic review and meta-analysis to identify and synthesise data for AMR carriage or infection in migrants to Europe to examine differences in patterns of AMR across migrant groups and in different settings. METHODS: For this systematic review and meta-analysis, we searched MEDLINE, Embase, PubMed, and Scopus with no language restrictions from Jan 1, 2000, to Jan 18, 2017, for primary data from observational studies reporting antibacterial resistance in common bacterial pathogens among migrants to 21 European Union-15 and European Economic Area countries. To be eligible for inclusion, studies had to report data on carriage or infection with laboratory-confirmed antibiotic-resistant organisms in migrant populations. We extracted data from eligible studies and assessed quality using piloted, standardised forms. We did not examine drug resistance in tuberculosis and excluded articles solely reporting on this parameter. We also excluded articles in which migrant status was determined by ethnicity, country of birth of participants' parents, or was not defined, and articles in which data were not disaggregated by migrant status. Outcomes were carriage of or infection with antibiotic-resistant organisms. We used random-effects models to calculate the pooled prevalence of each outcome. The study protocol is registered with PROSPERO, number CRD42016043681. FINDINGS: We identified 2274 articles, of which 23 observational studies reporting on antibiotic resistance in 2319 migrants were included. The pooled prevalence of any AMR carriage or AMR infection in migrants was 25·4% (95% CI 19·1-31·8; I2 =98%), including meticillin-resistant Staphylococcus aureus (7·8%, 4·8-10·7; I2 =92%) and antibiotic-resistant Gram-negative bacteria (27·2%, 17·6-36·8; I2 =94%). The pooled prevalence of any AMR carriage or infection was higher in refugees and asylum seekers (33·0%, 18·3-47·6; I2 =98%) than in other migrant groups (6·6%, 1·8-11·3; I2 =92%). The pooled prevalence of antibiotic-resistant organisms was slightly higher in high-migrant community settings (33·1%, 11·1-55·1; I2 =96%) than in migrants in hospitals (24·3%, 16·1-32·6; I2 =98%). We did not find evidence of high rates of transmission of AMR from migrant to host populations. INTERPRETATION: Migrants are exposed to conditions favouring the emergence of drug resistance during transit and in host countries in Europe. Increased antibiotic resistance among refugees and asylum seekers and in high-migrant community settings (such as refugee camps and detention facilities) highlights the need for improved living conditions, access to health care, and initiatives to facilitate detection of and appropriate high-quality treatment for antibiotic-resistant infections during transit and in host countries. Protocols for the prevention and control of infection and for antibiotic surveillance need to be integrated in all aspects of health care, which should be accessible for all migrant groups, and should target determinants of AMR before, during, and after migration. FUNDING: UK National Institute for Health Research Imperial Biomedical Research Centre, Imperial College Healthcare Charity, the Wellcome Trust, and UK National Institute for Health Research Health Protection Research Unit in Healthcare-associated Infections and Antimictobial Resistance at Imperial College London

Surgical site infection after gastrointestinal surgery in high-income, middle-income, and low-income countries: a prospective, international, multicentre cohort study

Background: Surgical site infection (SSI) is one of the most common infections associated with health care, but its importance as a global health priority is not fully understood. We quantified the burden of SSI after gastrointestinal surgery in countries in all parts of the world. Methods: This international, prospective, multicentre cohort study included consecutive patients undergoing elective or emergency gastrointestinal resection within 2-week time periods at any health-care facility in any country. Countries with participating centres were stratified into high-income, middle-income, and low-income groups according to the UN's Human Development Index (HDI). Data variables from the GlobalSurg 1 study and other studies that have been found to affect the likelihood of SSI were entered into risk adjustment models. The primary outcome measure was the 30-day SSI incidence (defined by US Centers for Disease Control and Prevention criteria for superficial and deep incisional SSI). Relationships with explanatory variables were examined using Bayesian multilevel logistic regression models. This trial is registered with ClinicalTrials.gov, number NCT02662231. Findings: Between Jan 4, 2016, and July 31, 2016, 13 265 records were submitted for analysis. 12 539 patients from 343 hospitals in 66 countries were included. 7339 (58·5%) patient were from high-HDI countries (193 hospitals in 30 countries), 3918 (31·2%) patients were from middle-HDI countries (82 hospitals in 18 countries), and 1282 (10·2%) patients were from low-HDI countries (68 hospitals in 18 countries). In total, 1538 (12·3%) patients had SSI within 30 days of surgery. The incidence of SSI varied between countries with high (691 [9·4%] of 7339 patients), middle (549 [14·0%] of 3918 patients), and low (298 [23·2%] of 1282) HDI (p < 0·001). The highest SSI incidence in each HDI group was after dirty surgery (102 [17·8%] of 574 patients in high-HDI countries; 74 [31·4%] of 236 patients in middle-HDI countries; 72 [39·8%] of 181 patients in low-HDI countries). Following risk factor adjustment, patients in low-HDI countries were at greatest risk of SSI (adjusted odds ratio 1·60, 95% credible interval 1·05–2·37; p=0·030). 132 (21·6%) of 610 patients with an SSI and a microbiology culture result had an infection that was resistant to the prophylactic antibiotic used. Resistant infections were detected in 49 (16·6%) of 295 patients in high-HDI countries, in 37 (19·8%) of 187 patients in middle-HDI countries, and in 46 (35·9%) of 128 patients in low-HDI countries (p < 0·001). Interpretation: Countries with a low HDI carry a disproportionately greater burden of SSI than countries with a middle or high HDI and might have higher rates of antibiotic resistance. In view of WHO recommendations on SSI prevention that highlight the absence of high-quality interventional research, urgent, pragmatic, randomised trials based in LMICs are needed to assess measures aiming to reduce this preventable complication

Impact of COVID-19 on cardiovascular testing in the United States versus the rest of the world

Objectives: This study sought to quantify and compare the decline in volumes of cardiovascular procedures between the United States and non-US institutions during the early phase of the coronavirus disease-2019 (COVID-19) pandemic. Background: The COVID-19 pandemic has disrupted the care of many non-COVID-19 illnesses. Reductions in diagnostic cardiovascular testing around the world have led to concerns over the implications of reduced testing for cardiovascular disease (CVD) morbidity and mortality. Methods: Data were submitted to the INCAPS-COVID (International Atomic Energy Agency Non-Invasive Cardiology Protocols Study of COVID-19), a multinational registry comprising 909 institutions in 108 countries (including 155 facilities in 40 U.S. states), assessing the impact of the COVID-19 pandemic on volumes of diagnostic cardiovascular procedures. Data were obtained for April 2020 and compared with volumes of baseline procedures from March 2019. We compared laboratory characteristics, practices, and procedure volumes between U.S. and non-U.S. facilities and between U.S. geographic regions and identified factors associated with volume reduction in the United States. Results: Reductions in the volumes of procedures in the United States were similar to those in non-U.S. facilities (68% vs. 63%, respectively; p = 0.237), although U.S. facilities reported greater reductions in invasive coronary angiography (69% vs. 53%, respectively; p < 0.001). Significantly more U.S. facilities reported increased use of telehealth and patient screening measures than non-U.S. facilities, such as temperature checks, symptom screenings, and COVID-19 testing. Reductions in volumes of procedures differed between U.S. regions, with larger declines observed in the Northeast (76%) and Midwest (74%) than in the South (62%) and West (44%). Prevalence of COVID-19, staff redeployments, outpatient centers, and urban centers were associated with greater reductions in volume in U.S. facilities in a multivariable analysis. Conclusions: We observed marked reductions in U.S. cardiovascular testing in the early phase of the pandemic and significant variability between U.S. regions. The association between reductions of volumes and COVID-19 prevalence in the United States highlighted the need for proactive efforts to maintain access to cardiovascular testing in areas most affected by outbreaks of COVID-19 infection

Mortality and pulmonary complications in patients undergoing surgery with perioperative SARS-CoV-2 infection: an international cohort study

Background: The impact of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) on postoperative recovery needs to be understood to inform clinical decision making during and after the COVID-19 pandemic. This study reports 30-day mortality and pulmonary complication rates in patients with perioperative SARS-CoV-2 infection. Methods: This international, multicentre, cohort study at 235 hospitals in 24 countries included all patients undergoing surgery who had SARS-CoV-2 infection confirmed within 7 days before or 30 days after surgery. The primary outcome measure was 30-day postoperative mortality and was assessed in all enrolled patients. The main secondary outcome measure was pulmonary complications, defined as pneumonia, acute respiratory distress syndrome, or unexpected postoperative ventilation. Findings: This analysis includes 1128 patients who had surgery between Jan 1 and March 31, 2020, of whom 835 (74·0%) had emergency surgery and 280 (24·8%) had elective surgery. SARS-CoV-2 infection was confirmed preoperatively in 294 (26·1%) patients. 30-day mortality was 23·8% (268 of 1128). Pulmonary complications occurred in 577 (51·2%) of 1128 patients; 30-day mortality in these patients was 38·0% (219 of 577), accounting for 81·7% (219 of 268) of all deaths. In adjusted analyses, 30-day mortality was associated with male sex (odds ratio 1·75 [95% CI 1·28–2·40], p\textless0·0001), age 70 years or older versus younger than 70 years (2·30 [1·65–3·22], p\textless0·0001), American Society of Anesthesiologists grades 3–5 versus grades 1–2 (2·35 [1·57–3·53], p\textless0·0001), malignant versus benign or obstetric diagnosis (1·55 [1·01–2·39], p=0·046), emergency versus elective surgery (1·67 [1·06–2·63], p=0·026), and major versus minor surgery (1·52 [1·01–2·31], p=0·047). Interpretation: Postoperative pulmonary complications occur in half of patients with perioperative SARS-CoV-2 infection and are associated with high mortality. Thresholds for surgery during the COVID-19 pandemic should be higher than during normal practice, particularly in men aged 70 years and older. Consideration should be given for postponing non-urgent procedures and promoting non-operative treatment to delay or avoid the need for surgery. Funding: National Institute for Health Research (NIHR), Association of Coloproctology of Great Britain and Ireland, Bowel and Cancer Research, Bowel Disease Research Foundation, Association of Upper Gastrointestinal Surgeons, British Association of Surgical Oncology, British Gynaecological Cancer Society, European Society of Coloproctology, NIHR Academy, Sarcoma UK, Vascular Society for Great Britain and Ireland, and Yorkshire Cancer Research

25th annual computational neuroscience meeting: CNS-2016

The same neuron may play different functional roles in the neural circuits to which it belongs. For example, neurons in the Tritonia pedal ganglia may participate in variable phases of the swim motor rhythms [1]. While such neuronal functional variability is likely to play a major role the delivery of the functionality of neural systems, it is difficult to study it in most nervous systems. We work on the pyloric rhythm network of the crustacean stomatogastric ganglion (STG) [2]. Typically network models of the STG treat neurons of the same functional type as a single model neuron (e.g. PD neurons), assuming the same conductance parameters for these neurons and implying their synchronous firing [3, 4]. However, simultaneous recording of PD neurons shows differences between the timings of spikes of these neurons. This may indicate functional variability of these neurons. Here we modelled separately the two PD neurons of the STG in a multi-neuron model of the pyloric network. Our neuron models comply with known correlations between conductance parameters of ionic currents. Our results reproduce the experimental finding of increasing spike time distance between spikes originating from the two model PD neurons during their synchronised burst phase. The PD neuron with the larger calcium conductance generates its spikes before the other PD neuron. Larger potassium conductance values in the follower neuron imply longer delays between spikes, see Fig. 17.Neuromodulators change the conductance parameters of neurons and maintain the ratios of these parameters [5]. Our results show that such changes may shift the individual contribution of two PD neurons to the PD-phase of the pyloric rhythm altering their functionality within this rhythm. Our work paves the way towards an accessible experimental and computational framework for the analysis of the mechanisms and impact of functional variability of neurons within the neural circuits to which they belong

Biotecnología del metabolismo del nitrógeno en plantas de interés forestal: implicaciones en bioeconomía

El concepto de bioeconomía tiene un papel cada vez más importante dentro del marco económico y ecológico global, considerándose hoy en día un pilar fundamental para un crecimiento sostenible. Un elemento esencial del desarrollo bioeconómico es la disponibilidad de una gran fuente renovable de biomasa y su conversión posteriormente en derivados de interés de diversa índole como materiales y energía. El Grupo de Biología Molecular y Biotecnología de la Universidad de Málaga desarrolla actividades encaminadas a conocer cómo el uso eficiente de los nutrientes nitrogenados determina el desarrollo vascular y la acumulación de biomasa en árboles. Los esfuerzos de investigación se han dirigido a estudiar la regulación molecular de la adquisición, asimilación y reciclaje de nitrógeno (N) para la biosíntesis de aminoácidos. Los estudios se han realizado en pino marítimo (Pinus pinaster Aiton), especie arbórea de gran importancia económica y ecológica en el área mediterránea y modelo relevante para la investigación genómica de coníferas. En el marco de varios proyectos europeos se han generado recursos genómicos y se ha establecido una plataforma tecnológica para la realización de estudios funcionales de genes en coníferas mediante embriogénesis somática. Se han producido líneas transgénicas (sobreexpresión y silenciamiento) para genes reguladores implicados en el metabolismo del N. Actualmente se exploran las propiedades moleculares y la regulación de genes implicados en la biosíntesis y el destino metabólico de la fenilalanina y la arginina, aminoácidos clave para la economía del N y la producción de biomasa en las coníferas. Se presenta una descripción general del programa de investigación y el papel de la biotecnología en el mismo.Universidad de Málaga. Campus de Excelencia Internacional Andalucía Tech