10 research outputs found
Geometric instability of graph neural networks on large graphs
- Publication venue
- Publication date
- 19/08/2023
- Field of study
We analyse the geometric instability of embeddings produced by graph neural
networks (GNNs). Existing methods are only applicable for small graphs and lack
context in the graph domain. We propose a simple, efficient and graph-native
Graph Gram Index (GGI) to measure such instability which is invariant to
permutation, orthogonal transformation, translation and order of evaluation.
This allows us to study the varying instability behaviour of GNN embeddings on
large graphs for both node classification and link prediction
Histone Methylation
- Author
- Allfrey
- Allis
- Bannister
- Bedford
- Bernstein
- Boa
- Borun
- Byvoet
- Chang
- Chen
- Clissold
- Cloos
- Cloos
- Dillon
- Dou
- Ehrbrecht
- Falnes
- Flemming
- Fodor
- Fraga
- Ghosh
- Guccione
- Hamamoto
- HĂ©lias
- Iberg
- Iwase
- Jensen
- Jenuwein
- Kim
- Kirmizis
- Klose
- Klose
- Kornberg
- Kossel
- Kubicek
- Kwon
- Lan
- Lee
- Margueron
- Martin
- Mikkelsen
- Milne
- Murray
- Nakamura
- Nakayama
- Ng
- Nielsen
- Okada
- Olin
- Paik
- Paik
- Paik
- Paik
- Paik
- Pal
- Peters
- Rea
- Sanders
- Santos-Rosa
- Shi
- Shi
- Shi
- Smith
- Tachibana
- Tachibana
- Thomas
- Trewick
- Trewick
- Tsukada
- Vakoc
- van Ingen
- Vermeulen
- Wang
- Whetstine
- Wysocka
- Wysocka
- Yamane
- Yang
- Zhang
- Zhang
- Publication venue
- 'Elsevier BV'
- Publication date
- 01/01/2010
- Field of study
Catalytic Function of the PR-Set7 Histone H4 Lysine 20 Monomethyltransferase Is Essential for Mitotic Entry and Genomic Stability
- Author
- Annunziato
- Barski
- Borun
- Botuyan
- Bunz
- Camato
- Cheng
- Couture
- D'Assoro
- Delaval
- Fang
- Goto
- Hendzel
- Hendzel
- Huang
- Huen
- Jenuwein
- Jorgensen
- Karachentsev
- Kim
- Klose
- Lee
- Linger
- Martens
- McManus
- McManus
- Morgan
- Murray
- Nelson
- Nishioka
- Pesavento
- Peters
- Pines
- Rice
- Rice
- Ruthenburg
- Sakaguchi
- Sanders
- Sautel
- Schotta
- Shi
- Shinkai
- Sims
- Smith
- Tardat
- Thomas
- Tidwell
- Trievel
- Trojer
- Vakoc
- Wolffe
- Worcel
- Wu
- Xiao
- Yang
- Publication venue
- 'American Society for Biochemistry & Molecular Biology (ASBMB)'
- Publication date
- Field of study
Dynamic Changes in Histone H3 Lysine 9 Methylations
- Author
- Aagaard
- Ahmad
- Annunziato
- Bannister
- Bannister
- Bannister
- Bickar
- Biron
- Borun
- Bosch
- Brehm
- Byvoet
- Cavalli
- Cheutin
- Cuthbert
- Duerre
- Eissenberg
- Fischle
- Fischle
- Goll
- Gonzalo
- Hendzel
- Hendzel
- Jackson
- Jacobs
- Janicki
- Julien
- Karachentsev
- Kiekhaefer
- Lachner
- Lachner
- Litt
- McManus
- McManus
- Melcher
- Metzger
- Murray
- Nakayama
- Ng
- Noma
- Paik
- Partridge
- Peters
- Rice
- Rice
- Russanova
- Santos-Rosa
- Schotta
- Shi
- Sims
- Thiriet
- Todaro
- Trewick
- van Leeuwen
- Volpe
- Wang
- Waterborg
- Zeng
- Zhang
- Publication venue
- 'American Society for Biochemistry & Molecular Biology (ASBMB)'
- Publication date
- Field of study
Tetrahymena thermophila JMJD3 Homolog Regulates H3K27 Methylation and Nuclear Differentiation
- Author
- Agger
- Agger
- Agger
- Aronica
- Austerberry
- Bannister
- Barradas
- Bednenko
- Borun
- Burgold
- Byvoet
- Callahan
- Campos
- Cao
- Chadee
- Chalker
- Chalker
- Chalker
- Cheng
- Chi
- Coyne
- Dahle
- Dambacher
- De Santa
- De Santa
- Dedon
- Duncan
- Hamilton
- Honda
- Hong
- Howard-Till
- Hubner
- Karrer
- Katoh
- Katz
- Kouzarides
- Kurth
- Lan
- Lee
- Lin
- Lin
- Liu
- Madireddi
- Malone
- Margueron
- Matsuda
- Meng-Chao Yao
- Miller
- Miura
- Mochizuki
- Mochizuki
- Mochizuki
- Mochizuki
- Nikiforov
- Nikiforov
- Noto
- Orias
- Pedersen
- Pei-Han Chung
- Rexer
- Rosendahl
- Seenundun
- Shaw
- Shi
- Sims
- Smothers
- Spivakov
- Tamaru
- Tamura
- Taverna
- Terashima
- Thompson
- Trewick
- Tsukada
- Upadhyay
- Wang
- Wells
- Yao
- Yao
- Yao
- Yun
- Publication venue
- 'American Society for Microbiology'
- Publication date
- Field of study
Chapter 4 Histone Demethylases and Cancer
- Author
- Abidi
- Abidi
- Agger
- Akahira
- Ancelin
- Annunziato
- Ayoub
- Bachmann
- Bachmann
- Balakrishnan
- Balciunas
- Bannister
- Bannister
- Barrett
- Barrett
- Bedford
- Benevolenskaya
- Berger
- Bernstein
- Bernstein
- Beyer
- Bhaumik
- Blackburn
- Bodnar
- Bolden
- Borges
- Borun
- Bracken
- Bres
- Bryant
- Bushman
- Byvoet
- Cao
- Cao
- Carling
- Carrozza
- Chen
- Chen
- Chen
- Chen
- Chen
- Cheung
- Cloos
- Collado
- Constantinides
- Couture
- Couture
- Croonquist
- Cuthbert
- D'Alessio
- Da
- Dacwag
- Daser
- DefeoâJones
- Deng
- Dodge
- Du
- Duerre
- Eilbracht
- Eilbracht
- Eissenberg
- El Messaoudi
- Falnes
- Fang
- Fischle
- Fischle
- Fodor
- Forneris
- Forneris
- Foster
- Frescas
- Frietze
- Fukahori
- Gearhart
- Gerber
- Glaser
- Gondek
- Guccione
- Guenther
- Gutierrez
- Hampsey
- Hansen
- Harper
- Hasegawa
- HasenpuschâTheil
- Hashimoto
- Hassig
- Hayakawa
- He
- Hediger
- Hirota
- Hoog
- Hu
- Huang
- Huang
- Huang
- Huang
- Huntsman
- Ishizaki
- Ito
- Iwase
- Jensen
- Jenuwein
- Jones
- Joshi
- Kahl
- Kamijo
- Keogh
- Kim
- Kim
- Kim
- Kim
- Kipreos
- Kirmizis
- Kleer
- Klose
- Klose
- Klose
- Koivisto
- Kondo
- Kornberg
- Kortschak
- Kouzarides
- KoyamaâNasu
- Krimpenfort
- Krivtsov
- Kubicek
- Kurash
- Kuratomi
- Kuzmichev
- La Starza
- Lachner
- Lagarou
- Lakshmikuttyamma
- Lal
- Lan
- Latres
- Laumonnier
- Lee
- Lee
- Lee
- Lee
- Lee
- Li
- Linnoila
- Loh
- LopezâBigas
- Lu
- Lubitz
- Luger
- Majumder
- Margueron
- Matthews
- Metzger
- Metzger
- Mikkelsen
- Minucci
- MohdâSarip
- MohdâSarip
- MohdâSarip
- Mulligan
- Nekrasov
- Nelson
- Ng
- Ng
- Nishioka
- Okada
- Okada
- Ooi
- Ozer
- Paik
- Paik
- Pal
- Pan
- Pasini
- Perillo
- Pfau
- Piao
- Pietersen
- Pollard
- Polytarchou
- Pothof
- Qian
- Qiao
- Raman
- Rosati
- Rowley
- Rozovskaia
- Sanchez
- Santi
- Santos
- Saramaki
- Sarma
- Schmidt
- Schotta
- Schuettengruber
- Schurter
- Schwartz
- Scibetta
- Scoumanne
- Scoumanne
- Secombe
- Sellers
- Sharpless
- Shi
- Shi
- Shi
- Shi
- Shi
- Shilatifard
- Shin
- Shirato
- Simon
- Sims
- Singer
- Sinha
- Smothers
- Sparmann
- Spivakov
- Stallcup
- Stavropoulos
- SteeleâPerkins
- Steger
- Strahl
- Strahl
- Subramanian
- Surani
- Suzuki
- Suzuki
- Suzuki
- Tachibana
- Tahiliani
- Tan
- TattonâBrown
- Taverna
- Tenney
- Teye
- Teye
- Tong
- TorresâPadilla
- Tremethick
- Trewick
- Trewick
- Trojer
- Trojer
- Tsai
- Tsichlis
- Tsukada
- Tsuneoka
- Tsuneoka
- Tu
- Tzatsos
- Tzschach
- Uren
- Vakoc
- van Leeuwen
- van Oevelen
- Varambally
- Varambally
- Vermeulen
- Vire
- Wang
- Wang
- Wang
- Wang
- Wang
- Wang
- Wang
- Wellmann
- Whetstine
- Wilsker
- Wissmann
- Wysocka
- Wysocka
- Xiang
- Xiao
- Yagi
- Yamagishi
- Yamane
- Yamane
- Yang
- Yang
- Yang
- Yoon
- You
- Yu
- Zeitlinger
- Zhang
- Zhang
- Zhao
- Zhu
- Zilberman
- Publication venue
- 'Elsevier BV'
- Publication date
- 01/01/2009
- Field of study
Secretion expression of SOD1 and its overlapping function with GSH in brewing yeast strain for better flavor and anti-aging ability
- Author
- A Karachitos
- Borun Zhang
- CH Orna
- CM Grant
- CT Duong
- DL Wang
- DW Russell
- F Lu
- H Ito
- H Sone
- J Fierro-Risco
- J Hansen
- J Sambrook
- J St-Pierre
- J Wang
- J Wawryn
- JH Grigsby
- JH Swiegers
- JJ Wang
- JN Zhang
- K Blomqvist
- K Jiang
- KD Villa
- KD Villanueba
- KM OâBrien
- KT Douglas
- LA Sturtz
- M Fratelli
- O Yasuyuki
- P Jezek
- P Storz
- Q Mu
- R Akada
- RH Schiestl
- S Yamano
- S Yoshida
- TB Yang
- UEB Donalies
- VC Culotta
- W-H Xie
- WH Shi
- X Fan
- Xiuping He
- Xuejing Bai
- XX Guo
- Y Li
- Y Ohtake
- Y Zhang
- Zhaoyue Wang
- ZY Wang
- ZY Wang
- ZY Wang
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Histone demethylases in physiology and cancer: a tale of two enzymes, JMJD3 and UTX
- Author
- Agger
- Agger
- Allis
- Anderton
- Annunziato
- Bannister
- Benyoucef
- Bernstein
- Borun
- Bracken
- Burgold
- Burgold
- Byvoet
- Cao
- Carlos Alberto Martinez
- Chang
- Cloos
- Copur
- Dahle
- Dai
- De Santa
- De Santa
- Denton
- Dobenecker
- Duerre
- Ene
- Ezponda
- Feng
- Fodor
- Greenfield
- Hamada
- Hashizume
- Heinemann
- Herz
- Hojfeldt
- Hong
- Hopkinson
- Horton
- Huang
- Hubner
- Issaeva
- Jacobs
- Jankowska
- Jenuwein
- Jenuwein
- Jepsen
- Jin
- Kelly Marie Arcipowski
- Kim
- Kim
- Klose
- Kooistra
- Kornberg
- Kotake
- Kruidenier
- Lan
- Lee
- Lee
- Li
- Li
- Liu
- Liu
- Luger
- Manna
- Mansour
- Mar
- Martin
- Maures
- Messer
- Muller
- Nickerson
- Nielsen
- Nigro
- Ntziachristos
- Pan
- Panagiotis Ntziachristos
- Park
- Parsons
- Peters
- Qi
- Ringrose
- Rose
- Rose
- Santos-Rosa
- Satoh
- Schmitz
- Schneider
- Schuettengruber
- Schwartz
- Seenundun
- Sen
- Sengoku
- Shaw
- Shi
- Shpargel
- Shpargel
- Shpargel
- Smith
- Svotelis
- Tan
- Tarayrah
- Thieme
- Thinnes
- Tie
- Tsukada
- Van der Meulen
- van Haaften
- Vandamme
- Voigt
- Walport
- Wang
- Wang
- Wang
- Welstead
- Whetstine
- Williams
- Xie
- Yokoyama
- Zhang
- Zhang
- Zhang
- Zhao
- Publication venue
- 'Elsevier BV'
- Publication date
- Field of study
Small-molecular modulators of cancer-associated epigenetic mechanisms
- Author
- Abu-Farha
- Albert
- Anglin
- Arrowsmith
- Avan
- Bailey
- Bamborough
- Bannister
- Bantscheff
- Barneda-Zahonero
- Barski
- Bartke
- Baylin
- Baylin
- Bedford
- Bedford
- Belkina
- Benelkebir
- Bertino
- Bestor
- Bhutani
- Binda
- Bissinger
- Bjorkman
- Blum
- Blumenschein Jr.
- Bodor
- Borun
- Bottomley
- Boumber
- Bourc'his
- Boxer
- Bradley
- Bradner
- Braig
- Brandl
- Bressi
- Brown
- Brueckner
- Byun
- Candelaria
- Carafa
- Cashen
- Cedar
- Chang
- Chang
- Chang
- Chang
- Chase
- Chen
- Chen
- Chen
- Chen
- Cheng
- Cheng
- Cherrier
- Chi
- Cho
- Choudhary
- Chowdhury
- Chuang
- Chung
- Chung
- Ciro
- Cloos
- Clouaire
- Cole
- Collins
- Connolly
- Copeland
- Cortez
- Crea
- Crea
- Culhane
- Curtis
- Daigle
- Datta
- Dawson
- Dawson
- Dawson
- Daze
- de Ruijter
- Deardorff
- Dell'Aversana
- Delmore
- Denis
- Deshpande
- Dey
- Dialynas
- Du
- Duvic
- Easwaran
- El-Osta
- Esteller
- Fang
- Feng
- Feng
- Ferguson
- Ferlay
- Figueroa
- Filippakopoulos
- Filippakopoulos
- Filippakopoulos
- Finnin
- Fiskus
- Florence
- French
- Fujita
- Furumai
- Gabbara
- Galanis
- Gershey
- Ghoshal
- Glazer
- Glozak
- Gooden
- Gore
- Gottlicher
- Greer
- Greiner
- Guenther
- Gui
- Hamada
- Hamada
- Hansen
- Hansen
- Harris
- Hashimoto
- Hashimshony
- Hauser
- Hayakawa
- Hayami
- Haynes
- Hazeldine
- Heinke
- Heintzman
- Herold
- Herold
- Hess-Stumpp
- Hewings
- Hewings
- Hillringhaus
- Hitchins
- Hodawadekar
- Holemon
- Holm
- Hong
- Horton
- Horton
- Huang
- Huang
- Huang
- Huang
- Huang
- Huang
- Huynh
- Ito
- Ito
- Itoh
- Iwasa
- Jemal
- Jones
- Juan
- Jurkin
- Kantarjian
- Karytinos
- Kauffman
- Kelly
- Khan
- Khan
- Khan
- Kikuchi
- King
- Klisovic
- Klose
- Knutson
- Krivtsov
- Krivtsov
- Kruidenier
- Kubicek
- Kubicek
- Kuppuswamy
- Lagger
- Lakshmikuttyamma
- Lavelle
- Lee
- Lee
- Lee
- Li
- Li
- Liu
- Liu
- Liu
- Liu
- Liu
- Liu
- Lock
- Loenarz
- Lohrum
- Lokken
- Lopes
- Luo
- Luu
- Lynch
- Mai
- Majumder
- Mallen-St Clair
- Margueron
- Marks
- Maruyama
- Matzuk
- Mertz
- Meyer
- Miller
- Mimasu
- Mimasu
- Min
- Min
- Mirguet
- Molife
- Morin
- Mosammaparast
- Mujtaba
- Naoki Miyata
- Ng
- Nicodeme
- Noushmehr
- Ogasawara
- Ohki
- Ohki
- Ohm
- Okada
- Okada
- Okano
- Okano
- Olsen
- Paliwal
- Peserico
- Peters
- Pfaffeneder
- Phiel
- Pontiki
- Popp
- Portela
- Pradhan
- Prokhortchouk
- Purandare
- Ragno
- Rayman
- Rea
- Richon
- Rideout 3rd
- Rosato
- Rose
- Rose
- Rose
- Rountree
- Rui
- Ruthenburg
- Saldana-Meyer
- Sambucetti
- Sanchez
- Sasaki
- Sauve
- Sauve
- Schenk
- Schirrmacher
- Schmidt
- Schuetz
- Schulte
- Schurter
- Scoumanne
- Segura-Pacheco
- Selvi
- Sengoku
- Seoane
- Shi
- Shi
- Shi
- Shinkai
- Siarheyeva
- Silverman
- Sinha
- Skillman
- Smith
- Somoza
- Song
- Spannhoff
- Spannhoff
- Sprangers
- Sterner
- Strahl
- Stresemann
- Suzuki
- Suzuki
- Suzuki
- Suzuki
- Tachibana
- Tachibana
- Tahiliani
- Takayoshi Suzuki
- Tan
- Tateishi
- Taverna
- Teng
- Trapp
- Trojer
- Tsai
- Tsuji
- Ueda
- Ueda
- Uemura
- Upadhyay
- Vaghefi
- van Kemenade
- Vanhaecke
- Vannini
- Vedadi
- Venolia
- Wang
- Wang
- Wang
- Wang
- Wang
- Wang
- Watson
- Webby
- Wen
- Whetstine
- Whittaker
- Willmann
- Wissmann
- Witt
- Wu
- Wu
- Xie
- Yamaguchi
- Yamane
- Yang
- Yang
- Yang
- Yang
- Yang
- Yao
- Yap
- Yoder
- Yoshida
- Yu
- Yuan
- Yukihiro Itoh
- Yun
- Zeng
- Zhang
- Zuber
- Publication venue
- 'Royal Society of Chemistry (RSC)'
- Publication date
- 01/01/2013
- Field of study
Histone methylation: a dynamic mark in health, disease and inheritance
- Author
- A Dhayalan
- A Grishok
- A Kirmizis
- A Nottke
- A Verdel
- AA Serandour
- AC Nottke
- AD Goldberg
- AJ Bannister
- AJ Bannister
- AP Siebold
- B Chang
- B Li
- B Sarg
- BD Strahl
- BE Bernstein
- BE Bernstein
- BM Zee
- C Bonne-Andrea
- C Fritsch
- C Jin
- C Martin
- CG Kleer
- CJ Webby
- CJ Woo
- CS Chan
- D Karachentsev
- D Kleine-Kohlbrecher
- D Moazed
- D Ng
- D Zilberman
- DJ Katz
- DK Shumaker
- E Guccione
- E Guccione
- E Rajakumara
- E Rajakumara
- EA Pollina
- EL Gershey
- EL Greer
- EL Greer
- Eric L. Greer
- F Fuks
- F Lan
- F Lan
- FM Cernilogar
- G McColl
- G van Haaften
- GA Blobel
- GG Wang
- GG Wang
- GL Cuthbert
- H Santos-Rosa
- HH Qi
- HP Visser
- IM Hall
- J Dekker
- J Huang
- J Kim
- J Kim
- J Wysocka
- JC Eissenberg
- JF Flanagan
- JL Rinn
- JM Schulze
- JM Sogo
- JR Horton
- JR Whetstine
- JS Lee
- K Haempel
- K Murray
- K Noma
- K Noma
- KA McMahon
- KC Wang
- KH Seong
- KM Lower
- L Li
- L Zhu
- LA Cirillo
- LJ van Zutven
- LM Johnson
- M Albert
- M Field
- M Guttman
- M Lachner
- M Lange
- M Mitson
- M Mohan
- M Shogren-Knaak
- M Tahiliani
- M Tan
- M Vermeulen
- M Vermeulen
- M Xu
- MC Balemans
- MC Tsai
- MG Lee
- MG Lee
- MG Pray-Grant
- MJ Koziol
- MR Rountree
- MT Pedersen
- MV Botuyan
- N Cerveira
- N Kurotaki
- NA Youngson
- ND Heintzman
- NJ Francis
- NJ Fuda
- NJ Krogan
- NL Vastenhouw
- NL Young
- O Bell
- O Rechavi
- P Byvoet
- P Chi
- P Drane
- P Hajkova
- P Kolasinska-Zwierz
- P Scaffidi
- P Scaffidi
- P Schorderet
- P Zhang
- PA Cloos
- PJ Skene
- PR Nielsen
- PW Lewis
- Q Feng
- R Magnani
- R Margueron
- R Margueron
- R Sprangers
- RA Greenberg
- RA Gupta
- RE Amir
- RE Collins
- RF Luco
- RF Luco
- RJ Sims
- RJ Sims
- RR Pandey
- S Eustermann
- S Honda
- S Iwase
- S Iwase
- S Iwase
- S Kim
- S Rea
- S Seenundun
- S Tillib
- S Varambally
- SA Miller
- SA Miller
- SD Taverna
- SF de Almeida
- SG Gu
- T Bartke
- T Ernst
- T Fukagawa
- T Kleefstra
- T Kouzarides
- T Muramoto
- T Nagano
- T Suganuma
- T Sugiyama
- TA Milne
- TG Kahn
- TJ Maures
- TW Borun
- V Hoppmann
- VJ Simpson
- W Deng
- W Fischle
- W Fischle
- W Liu
- WK Paik
- WW Tsai
- X Shi
- Y Huang
- Y Katan-Khaykovich
- Y Ogawa
- Y Shi
- Y Tsukada
- Y Wang
- Y Wang
- Y Yang
- Yang Shi
- Zhuoyu Ni
- ZW Sun
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study