Tirisporella gen. nov., an ascomycete from the mangrove palm Nypa fruticans

Tirisporella beccariana comb.nov. is redescribed from decomposing leaf petiole (or rachis) bases of Nypa fruticans recently collected in Malaysia and the Philippiines. The superficial ascomata bear bitunicate asci with (3-)5(-7)-septate ascospores that are brown and verrucose, except for the prominent hyaline basal cell, and furnished with a distinctive apical appendage that arises from the spore wall. Te ultrastructure of the fungus is contrasted with that of species of Corollospora and Corallicola, with particular reference to the mode of ascospore appendage formation. The species was originally described from a Sarawak collection as Sphaeria becariana and later transferred to Melanomma and given the new name Melanomma cesatianum. Gibberidea nipae is a synonym. The recent collections were compared with type specimens. The fungus is not properly placed in Melanomma or Gibberidea or other known genera and a new genus Tiriporella is described.published_or_final_versio

A RIPE3b1-like factor binds to a novel site in the human insulin promoter in a redox-dependent manner

AbstractIn the human insulin gene, a regulatory sequence upstream of the transcription start site at −229 to −258 (the E2 element) binds a ubiquitous factor USF. The present study led to the identification of a second factor, D0, that binds to an adjacent upstream site, the C2 element, that has previously not been described. The results demonstrate that D0 exhibits similar properties to RIPE3b1, a factor shown to be an important determinant of insulin gene β-cell-specific expression. Binding of D0 to the C2 element was abolished by the oxidising agent diamide, and the alkylating agent N-ethylmaleimide. The results indicate that expression of the insulin gene may be regulated by a redox-dependent pathway involving RIPE3b1 or a RIPE3b1-like factor

Point-Spread-Function-Aware Slice-to-Volume Registration: Application to Upper Abdominal MRI Super-Resolution

MR image acquisition of moving organs remains challenging despite the advances in ultra-fast 2D MRI sequences. Post-acquisition techniques have been proposed to increase spatial resolution a posteriori by combining acquired orthogonal stacks into a single, high-resolution (HR) volume. Current super-resolution techniques classically rely on a two-step procedure. The volumetric reconstruction step leverages a physical slice acquisition model. However, the motion correction step typically neglects the point spread function (PSF) information. In this paper, we propose a PSF-aware slice-to-volume registration approach and, for the first time, demonstrate the potential benefit of Super-Resolution for upper abdominal imaging. Our novel reconstruction pipeline takes advantage of different MR acquisitions clinically used in routine MR cholangiopancreatography studies to guide the registration. On evaluation of clinically relevant image information, our approach outperforms state-of-the-art reconstruction toolkits in terms of visual clarity and preservation of raw data information. Overall, we achieve promising results towards replacing currently required CT scans

Development and simultaneous application of multiple care protocols in critical care: amulticenter feasibility study

Objective: To test the feasibility of and interactions among three software-driven critical care protocols. Design: Prospective cohort study. Setting: Intensive care units in six European and American university hospitals. Patients: 174 cardiac surgery and 41 septic patients. Interventions: Application of software-driven protocols for cardiovascular management, sedation, and weaning during the first 7days of intensive care. Measurements and results: All protocols were used simultaneously in 85% of the cardiac surgery and 44% of the septic patients, and any one of the protocols was used for 73 and 44% of study duration, respectively. Protocol use was discontinued in 12% of patients by the treating clinician and in 6% for technical/administrative reasons. The number of protocol steps per unit of time was similar in the two diagnostic groups (n.s. for all protocols). Initial hemodynamic stability (a protocol target) was achieved in 26 ± 18 min (mean ± SD) in cardiac surgery and in 24 ± 18 min in septic patients. Sedation targets were reached in 2.4 ± 0.2 h in cardiac surgery and in 3.6 ± 0.2 h in septic patients. Weaning protocol was started in 164 (94%; 154 extubated) cardiac surgery and in 25 (60%; 9 extubated) septic patients. The median (interquartile range) time from starting weaning to extubation (a protocol target) was 89 min (range 44-154 min) for the cardiac surgery patients and 96 min (range 56-205 min) for the septic patients. Conclusions: Multiple software-driven treatment protocols can be simultaneously applied with high acceptance and rapid achievement of primary treatment goals. Time to reach these primary goals may provide aperformance indicato

Topological Entanglement Entropy of a Bose-Hubbard Spin Liquid

The Landau paradigm of classifying phases by broken symmetries was demonstrated to be incomplete when it was realized that different quantum Hall states could only be distinguished by more subtle, topological properties. Today, the role of topology as an underlying description of order has branched out to include topological band insulators, and certain featureless gapped Mott insulators with a topological degeneracy in the groundstate wavefunction. Despite intense focus, very few candidates for these topologically ordered "spin liquids" exist. The main difficulty in finding systems that harbour spin liquid states is the very fact that they violate the Landau paradigm, making conventional order parameters non-existent. Here, we uncover a spin liquid phase in a Bose-Hubbard model on the kagome lattice, and measure its topological order directly via the topological entanglement entropy. This is the first smoking-gun demonstration of a non-trivial spin liquid, identified through its entanglement entropy as a gapped groundstate with emergent Z2 gauge symmetry.Comment: 4+ pages, 3 figure

Impact of UV Radiation from Giant Spirals on the Evolution of Dwarf Galaxies

We show that ultraviolet radiation, with wavelengths shorter than 2000 A, escaping from the disks of giant spirals could be one of the principal factors affecting the evolution of low mass satellite galaxies. We demonstrate, using a semi-qualitative model, that the Lyman continuum part of the radiation field can lead to ionization of the ISM of the dwarf galaxies through the process of photoevaporation, making the ISM virtually unobservable. The FUV part (912 < lambda < 2000 A) is shown to dominate over the internal sources of radiation for most of the Galactic dwarf spheroidals. The proposed environmental factor could be at least partially responsible for the bifurcation of the low mass proto-galaxies into two sequences - dwarf irregulars and dwarf spheroidals. We discuss many peculiarities of the Local Group early-type dwarfs which can be accounted for by the impact of the UV radiation from the host spiral galaxy (Milky Way or M31).Comment: 15 pages, 12 figures. Accepted for publication in MNRAS. More consistent photoionization model is used in Sect. 2. All main results stay unchange

Fundamental oxidation processes in the remote marine atmosphere investigated using the NO–NO₂–O₃ photostationary state

The photostationary state (PSS) equilibrium between NO and NO₂ is reached within minutes in the atmosphere and can be described by the PSS parameter, φ. Deviations from expected values of φ have previously been used to infer missing oxidants in diverse locations, from highly polluted regions to the extremely clean conditions observed in the remote marine boundary layer (MBL), and have been interpreted as missing understanding of fundamental photochemistry. Here, contrary to these previous observations, we observe good agreement between PSS-derived NO₂ ([NO₂]PSS ext.), calculated from measured NO, O₃, and jNO₂ and photochemical box model predictions of peroxy radicals (RO₂ and Hv), and observed NO₂ ([NO₂]Obs.) in extremely clean air containing low levels of CO ( 100 ppbV), we observed higher levels of NO₂ than inferred from the PSS, with [NO₂]Obs.  [NO₂]PSS ext. of 1.12–1.68 (25th–75th percentile), implying underestimation of RO₂ radicals by 18.5–104 pptV. Potential NO₂measurement artefacts have to be carefully considered when comparing PSS-derived NO₂ to observed NO₂, but we show that the NO₂ artefact required to explain the deviation would have to be ∼ 4 times greater than the maximum calculated from known interferences. If the additional RO2 radicals inferred from the PSS convert NO to NO₂ with a reaction rate equivalent to that of methyl peroxy radicals (CH₃O₂), then the calculated net ozone production rate (NOPR, ppbV h¯¹) including these additional oxidants is similar to the average change in O₃ observed, within estimated uncertainties, once halogen oxide chemistry is accounted for. This implies that such additional peroxy radicals cannot be excluded as a missing oxidant in clean marine air containing aged pollution and that modelled RO₂ concentrations are significantly underestimated under these conditions

Identification and phylogenetic comparison of p53 in two distinct mussel species (Mytilus)

Author Posting. © The Authors, 2005. This is the author's version of the work. It is posted here by permission of Elsevier B. V. for personal use, not for redistribution. The definitive version was published in Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology 140 (2005): 237-250, doi:10.1016/j.cca.2005.02.011.The extent to which humans and wildlife are exposed to anthropogenic challenges is an important focus of environmental research. Potential use of p53 gene family marker(s) for aquatic environmental effects monitoring is the long-term goal of this research. The p53 gene is a tumor suppressor gene that is fundamental in cell cycle control and apoptosis. It is mutated or differentially expressed in about 50% of all human cancers and p53 family members are differentially expressed in leukemic clams. Here, we report the identification and characterization of the p53 gene in two species of Mytilus, Mytilus edulis and Mytilus trossulus, using RT-PCR with degenerate and specific primers to conserved regions of the gene. The Mytilus p53 proteins are 99.8% identical and closely related to clam (Mya) p53. In particular, the 3′ untranslated regions were examined to gain understanding of potential post-transcriptional regulatory pathways of p53 expression. We found nuclear and cytoplasmic polyadenylation elements, adenylate/uridylate-rich elements, and a K-box motif previously identified in other, unrelated genes. We also identified a new motif in the p53 3′UTR which is highly conserved across vertebrate and invertebrate species. Differences between the p53 genes of the two Mytilus species may be part of genetic determinants underlying variation in leukemia prevalence and/or development, but this requires further investigation. In conclusion, the conserved regions in these p53 paralogues may represent potential control points in gene expression. This information provides a critical first step in the evaluation of p53 expression as a potential marker for environmental assessment.AFM was supported by the Greater Vancouver Regional District, BC, Canada, and RLC was supported by STAR grant R82935901 from the Environmental Protection Agency (USA)

Development and simultaneous application of multiple care protocols in critical care: a multicenter feasibility study

OBJECTIVE: To test the feasibility of and interactions among three software-driven critical care protocols. DESIGN: Prospective cohort study. SETTING: Intensive care units in six European and American university hospitals. PATIENTS: 174 cardiac surgery and 41 septic patients. INTERVENTIONS: Application of software-driven protocols for cardiovascular management, sedation, and weaning during the first 7 days of intensive care. MEASUREMENTS AND RESULTS: All protocols were used simultaneously in 85% of the cardiac surgery and 44% of the septic patients, and any one of the protocols was used for 73 and 44% of study duration, respectively. Protocol use was discontinued in 12% of patients by the treating clinician and in 6% for technical/administrative reasons. The number of protocol steps per unit of time was similar in the two diagnostic groups (n.s. for all protocols). Initial hemodynamic stability (a protocol target) was achieved in 26+/-18 min (mean+/-SD) in cardiac surgery and in 24+/-18 min in septic patients. Sedation targets were reached in 2.4+/-0.2h in cardiac surgery and in 3.6 +/-0.2h in septic patients. Weaning protocol was started in 164 (94%; 154 extubated) cardiac surgery and in 25 (60%; 9 extubated) septic patients. The median (interquartile range) time from starting weaning to extubation (a protocol target) was 89 min (range 44-154 min) for the cardiac surgery patients and 96 min (range 56-205 min) for the septic patients. CONCLUSIONS: Multiple software-driven treatment protocols can be simultaneously applied with high acceptance and rapid achievement of primary treatment goals. Time to reach these primary goals may provide a performance indicator