Characterization of radiotherapy component impact on MR imaging quality for an MRgRT system

Radiotherapy components of an magnetic resonnace-guided radiotherapy (MRgRT) system can alter the magnetic fields, causing spatial distortion and image deformation, altering imaging and radiation isocenter coincidence and the accuracy of dose calculations. This work presents a characterization of radiotherapy component impact on MR imaging quality in terms of imaging isocenter variation and spatial integrity changes on a 0.35T MRgRT system, pre- and postupgrade of the system. The impact of gantry position, MLC field size, and treatment table power state on imaging isocenter and spatial integrity were investigated. A spatial integrity phantom was used for all tests. Images were acquired for gantry angles 0-330° at 30° increments to assess the impact of gantry position. For MLC and table power state tests all images were acquired at the home gantry position (330°). MLC field sizes ranged from 1.66 to 27.4 cm edge length square fields. Imaging isocenter shift caused by gantry position was reduced from 1.7 mm at gantry 150° preupgrade to 0.9 mm at gantry 120° postupgrade. Maximum spatial integrity errors were 0.5 mm or less pre- and postupgrade for all gantry angles, MLC field sizes, and treatment table power states. However, when the treatment table was powered on, there was significant reduction in SNR. This study showed that gantry position can impact imaging isocenter, but spatial integrity errors were not dependent on gantry position, MLC field size, or treatment table power state. Significant isocenter variation, while reduced postupgrade, is cause for further investigation

Do fall additions of salmon carcasses benefit food webs in experimental streams?

This is the postprint version of the article. The printed version of the article can be found here: http://www.springerlink.com/content/jl0122219v283124/Research showing that salmon carcasses support the productivity and biodiversity of aquatic and riparian ecosystems has been conducted over a variety of spatial and temporal scales. In some studies, carcasses were manipulated in a single pulse or loading rate or manipulations occurred during summer and early fall, rather than simulating the natural dynamic of an extended spawning period, a gradient of loading rates, or testing carcass effects in late fall-early winter when some salmon stocks in the US Pacific Northwest spawn. To address these discrepancies, we manipulated salmon carcass biomass in 16 experimental channels located in the sunlit floodplain of the Cedar River, WA, USA between mid-September and mid-December, 2006. Total carcass loads ranged from 0–4.0 kg/m2 (0, 0.001, 0.01, 0.1, 0.5, 1.0, 2.0 and 4.0 kg/m2, n = 2 per treatment) and were added to mimic the temporal dynamic of an extended spawning period. We found little evidence that carcasses influenced primary producer biomass or fish growth; however, nutrients and some primary consumer populations increased with loading rate. These effects varied through time, however. We hypothesize that the variable effects of carcasses were a result of ambient abiotic condition, such as light, temperature and disturbance that constrained trophic response. There was some evidence to suggest peak responses for primary producers and consumers occurred at a loading rate of *1.0–2.0 kg/m2, which was similar to other experimental studies conducted during summer

Jack Voltaic 3.0 Cyber Research Report

The Jack Voltaic (JV) Cyber Research project is an innovative, bottom-up approach to critical infrastructure resilience that informs our understanding of existing cybersecurity capabilities and identifies gaps. JV 3.0 contributed to a repeatable framework cities and municipalities nationwide can use to prepare. This report on JV 3.0 provides findings and recommendations for the military, federal agencies, and policy makers

Implications of extinction due to meteoritic smoke in the upper stratosphere

Recent optical observations of aerosols in the upper stratosphere and mesosphere show significant amounts of extinction at altitudes above about 40 km where the stratospheric sulfate aerosol layer ends. Recent modeling of this region reveals that meteoritic smoke settling from the mesosphere and its interaction with the upper part of the sulfate aerosol layer is the origin of the observed extinction. Extinction in this region has major implications for the interpretation and analysis of several kinds of aerosol data (satellite and lidar). We compare observations from the SAGE II satellite and from NOAA's lidar located at Mauna Loa, Hawaii to extinction profiles derived from the Whole Atmosphere Community Climate Model (WACCM) coupled with the Community Aerosol and Radiation Model for Atmospheres (CARMA). Our results show that a major source of extinction exists in the region above about 30 km that must be addressed by all remote sensing instruments that have traditionally used the stratosphere above about 30 km as an aerosol free region to estimate the molecular component of their total extinction. It is also shown that meteoritic smoke not only contributes to but also becomes the dominant source of aerosol extinction above 35 km and poleward of 30 degrees in latitude, as well as above 40 km in the tropics. After addressing the concerns described here, current and past observations of this region could be reanalyzed to further our understanding of meteoritic dust in the upper stratosphere

Doppler lidar measurements of oriented planar ice crystals falling from supercooled and glaciated layer clouds

The properties of planar ice crystals settling horizontally have been investigated using a vertically-pointing Doppler lidar. Strong specular reflections were observed from their oriented basal facets, identified by comparison with a second lidar pointing 4deg from zenith. Analysis of 17 months of continuous high-resolution observations reveal that these pristine crystals are frequently observed in ice falling from mid-level mixed-phase layer clouds (85% of the time for layers at -15C). Detailed analysis of a case study indicates that the crystals are nucleated and grow rapidly within the supercooled layer, then fall out, forming well-defined layers of specular reflection. From the lidar alone the fraction of oriented crystals cannot be quantified, but polarimetric radar measurements confirmed that a substantial fraction of the crystal population was well oriented. As the crystals fall into subsaturated air, specular reflection is observed to switch off as the crystal faces become rounded and lose their faceted structure. Specular reflection in ice falling from supercooled layers colder than -22C was also observed, but was much less pronounced than at warmer temperatures: we suggest that in cold clouds it is the small droplets in the distribution that freeze into plates and produce specular reflection, whilst larger droplets freeze into complex polycrystals. The lidar Doppler measurements show that typical fall speeds for the oriented crystals are 0.3m/s, with a weak temperature correlation; the corresponding Reynolds number is Re~10, in agreement with light-pillar measurements. Coincident Doppler radar observations show no correlation between the specular enhancement and eddy dissipation rate, indicating that turbulence does not control crystal orientation in these clouds.Comment: revised manuscript for Q. J. Royal Met So

Stratospheric aerosol - Observations, processes, and impact on climate

Interest in stratospheric aerosol and its role in climate have increased over the last decade due to the observed increase in stratospheric aerosol since 2000 and the potential for changes in the sulfur cycle induced by climate change. This review provides an overview about the advances in stratospheric aerosol research since the last comprehensive assessment of stratospheric aerosol was published in 2006. A crucial development since 2006 is the substantial improvement in the agreement between in situ and space-based inferences of stratospheric aerosol properties during volcanically quiescent periods. Furthermore, new measurement systems and techniques, both in situ and space based, have been developed for measuring physical aerosol properties with greater accuracy and for characterizing aerosol composition. However, these changes induce challenges to constructing a long-term stratospheric aerosol climatology. Currently, changes in stratospheric aerosol levels less than 20% cannot be confidently quantified. The volcanic signals tend to mask any nonvolcanically driven change, making them difficult to understand. While the role of carbonyl sulfide as a substantial and relatively constant source of stratospheric sulfur has been confirmed by new observations and model simulations, large uncertainties remain with respect to the contribution from anthropogenic sulfur dioxide emissions. New evidence has been provided that stratospheric aerosol can also contain small amounts of nonsulfate matter such as black carbon and organics. Chemistry-climate models have substantially increased in quantity and sophistication. In many models the implementation of stratospheric aerosol processes is coupled to radiation and/or stratospheric chemistry modules to account for relevant feedback processes

Noisy neighbourhoods: quorum sensing in fungal-polymicrobial infections

Quorum sensing was once considered a way in which a species was able to sense its cell density and regulate gene expression accordingly. However, it is now becoming apparent that multiple microbes can sense particular quorum-sensing molecules, enabling them to sense and respond to other microbes in their neighbourhood. Such interactions are significant within the context of polymicrobial disease, in which the competition or cooperation of microbes can alter disease progression. Fungi comprise a small but important component of the human microbiome and are in constant contact with bacteria and viruses. The discovery of quorum-sensing pathways in fungi has led to the characterization of a number of interkingdom quorum-sensing interactions. Here, we review the recent developments in quorum sensing in medically important fungi, and the implications these interactions have on the host's innate immune response

Do fall additions of salmon carcasses benefit food webs in experimental streams?

Research showing that salmon carcasses support the productivity and biodiversity of aquatic and riparian ecosystems has been conducted over a variety of spatial and temporal scales. In some studies, carcasses were manipulated in a single pulse or loading rate or manipulations occurred during summer and early fall, rather than simulating the natural dynamic of an extended spawning period, a gradient of loading rates, or testing carcass effects in late fall-early winter when some salmon stocks in the US Pacific Northwest spawn. To address these discrepancies, we manipulated salmon carcass biomass in 16 experimental channels located in the sunlit floodplain of the Cedar River, WA, USA between mid-September and mid-December, 2006. Total carcass loads ranged from 0–4.0 kg/m2 (0, 0.001, 0.01, 0.1, 0.5, 1.0, 2.0 and 4.0 kg/m2, n = 2 per treatment) and were added to mimic the temporal dynamic of an extended spawning period. We found little evidence that carcasses influenced primary producer biomass or fish growth; however, nutrients and some primary consumer populations increased with loading rate. These effects varied through time, however. We hypothesize that the variable effects of carcasses were a result of ambient abiotic condition, such as light, temperature and disturbance that constrained trophic response. There was some evidence to suggest peak responses for primary producers and consumers occurred at a loading rate of *1.0–2.0 kg/m2, which was similar to other experimental studies conducted during summer