DNA i-motif Stabilization by Ligand Binding to Loop Regions

DNA i-motifs are a secondary structure of DNA that can be useful in a variety of ways, but this experiment investigates the maximum potential to stabilize i-motifs artificially with a small molecule binding to loop regions. DNA with different position and number of loops was tested to see to what extent the i-motif could be stabilized . A drug, Actinomycin D, was used for its known high affinity for a particular DNA sequence, which we used to make the loops of the i-motif. The binding constant for the drug to the DNA was determined through fluorescense spectroscopy while the presence of the i-motif structure was confirmed using Circular Dichroism spectra. The resulting dissociation constants showed that AMD had a higher affinity for the DNA strands when in the i-motif conformation at pH 5.4. The small molecule had the greatest binding constant when more than one binding site was present except in the case of L13HP due to steric hindrance by the nature of the i-motif structure

Lateglacial and Holocene climate and environmental change in the northeastern Mediterranean region: Diatom evidence from Lake Dojran (Republic of Macedonia/Greece)

The juncture between the west-east and north-south contrasting Holocene climatic domains across the Mediterranean is complex and poorly understood. Diatom analysis of Lake Dojran (Republic of Macedonia/Greece) provides a new insight into lake levels and trophic status during the Lateglacial and Holocene periods in the northeastern Mediterranean. Following a very shallow or even desiccated state at the core base at ca. 12,500 cal yr BP, indicated by sedimentological and hydro-acoustic data, diatoms indicate lake infilling, from a shallow state with abundant benthos to a plankton-dominated relatively high lake level and eutrophic state thereafter. Diatom-inferred shallowing between ca. 12,400 - 12,000 cal yr BP and a very low lake level and eutrophic, oligosaline state between ca. 12,000 - 11,500 cal yr BP provide strong evidence for Younger Dryas aridity. The earliest Holocene (ca. 11,500 - 10,700 cal yr BP) was characterised by a high lake level, followed by a lake-level reduction and increased trophic level between ca. 10,700-8,500 cal yr BP. The lake was relatively deep and exhibited peak Holocene trophic level between ca. 8,500-3,000 cal yr BP, becoming shallow thereafter. The diatom data provide more robust evidence and strengthen previous lake-level interpretation based on sedimentological and geochemical data during the earliest, mid and late Holocene, and also clarify previous uncertainty in interpretation of Lateglacial and early-Holocene lake-level change. Our results are also important in disentangling regional climate effects from local catchment dynamics during the Holocene, and to this end we exploit extant regional palynological evidence for vegetation change in the highlands and lowlands. The importance of seasonality in driving Holocene climate change is assessed by reference to the summer and winter latitudinal temperature gradient (LTG) model of Davis and Brewer (2009). We suggest that increased precipitation drove the high lake level during the earliest Holocene. The early- Holocene low lake level and relatively high trophic state may result climatically from high seasonality of precipitation and locally from limited, nutrient-rich catchment runoff. We argue that the mid- Holocene relatively deep and eutrophic state was driven mainly by local vegetation succession and associated changes in catchment processes, rather than showing a close relationship to climate change. The late-Holocene shallow state may have been influenced by a temperature-induced increase in evaporative concentration, but was coupled with clear evidence for intensified human impact. This study improves understanding of Lateglacial and Holocene climate change in the northeastern Mediterranean, suggests the important role of the LTG on moisture availability during the Holocene, and clarifies the influence of catchment processes on palaeohydrology

Concert recording 2022-11-14

[Track 1]. Solo de concours / André Messager -- [Track 2]. Concertino for clarinet and piano / Carl Maria von Weber -- [Track 3]. Concerto No. 2 in E-flat Major. III. Alla polacca / Carl Maria von Weber -- [Track 4]. Sonatina for clarinet and piano. III. Furioso / Malcolm Arnold -- [Track 5]. Promenade (Walking the dog) for clarinet & piano / George Gershwin / arr. Shieley Denwood -- [Track 6]. Fantasistykke for clarinet and piano / Carl Nielsen -- [Track 7]. Sonata for clarinet and piano. I. Mässig bewegt / Paul Hindemith -- [Track 8]. Premiere Rhapsody for clarinet and piano / Claude Debussy -- [Track 9]. Impromptu: Duo for Clarinet and Marimba / William A.R. May -- [Track 10]. Irish suite / arr. Elliot A. Del Borgo -- [Track 11]. Danse Macabre / Camille Saint-Saëns ; arr. Melanie Thorne -- [Track 12]. “Nimrod” from Enigma variations / Edward Elgar ; arr. Jeanie Murrow -- [Track 13]. Claribel / Roland Cardon

Concert recording 2022-11-14

[Track 1]. Solo de concours / André Messager -- [Track 2]. Concertino for clarinet and piano / Carl Maria von Weber -- [Track 3]. Concerto No. 2 in E-flat Major. III. Alla polacca / Carl Maria von Weber -- [Track 4]. Sonatina for clarinet and piano. III. Furioso / Malcolm Arnold -- [Track 5]. Promenade (Walking the dog) for clarinet & piano / George Gershwin / arr. Shieley Denwood -- [Track 6]. Fantasistykke for clarinet and piano / Carl Nielsen -- [Track 7]. Sonata for clarinet and piano. I. Mässig bewegt / Paul Hindemith -- [Track 8]. Premiere Rhapsody for clarinet and piano / Claude Debussy -- [Track 9]. Impromptu: Duo for Clarinet and Marimba / William A.R. May -- [Track 10]. Irish suite / arr. Elliot A. Del Borgo -- [Track 11]. Danse Macabre / Camille Saint-Saëns ; arr. Melanie Thorne -- [Track 12]. “Nimrod” from Enigma variations / Edward Elgar ; arr. Jeanie Murrow -- [Track 13]. Claribel / Roland Cardon

Statistics of extreme objects in the Juropa Hubble Volume simulation

We present the first results from the JUropa huBbLE volumE (Jubilee) project, based a large N-body, dark matter-only cosmological simulation with a volume of $V=(6 h^{-1}\mathrm{Gpc})^3$, containing 6000$^3$ particles, performed within the concordance $\Lambda$CDM cosmological model. The simulation volume is sufficient to probe extremely large length scales in the universe, whilst at the same time the particle count is high enough so that dark matter haloes down to $1.5\times10^{12} h^{-1}\mathrm{M}_\odot$ can be resolved. At $z = 0$ we identify over 400 million haloes. The cluster mass function is derived using three different halofinders and compared to fitting functions in the literature. The distribution of clusters of maximal mass across redshifts agrees well with predicted masses of extreme objects, and we explicitly confirm that the Poisson distribution is very good at describing the distribution of rare clusters. The Poisson distribution also matches well the level to which cosmic variance can be expected to affect number counts of high mass clusters. We find that objects like the Bullet cluster exist in the far-tail of the distribution of mergers in terms of relative collisional speed. We also derive the number counts of voids in the simulation box for $z = 0$, $0.5$ and $1$.Comment: Version 2. 12 pages, 9 figures. Accepted by MNRA

Winter territory prospecting is associated with life-history stage but not activity in a passerine

Finding a high quality territory is essential for many animals to reproduce successfully. Despite its importance for fitness, we know little about the process of territory prospecting in wild birds, and whether individual traits and behaviours, such as personality, co-vary with territory prospecting. Here, we use long-term data from a wild, insular house sparrow Passer domesticus population to test three hypotheses about territory fidelity and prospecting: (1) House sparrows show high territory fidelity between years and also during winter. (2) Individuals will prospect for a breeding territory during their first winter whereas older, more experienced individuals will keep a territory from previous years and will, therefore, show no or reduced winter territory prospecting. (3) More active behavioural types will prospect more than less active behavioural types. We use data from four winters from automatically, daily recorded nest-box visits of 188 birds of known age. The number of nest-boxes that each individual visited within each winter was used as a proxy of winter territory prospecting. We show that house sparrows visit multiple nest-boxes during their first winter, whereas older individuals keep territories year-round and, potentially because of this, indeed show reduced winter territory prospecting. Activity was not associated with the number of nest-boxes visited. Further research is needed to investigate whether time of territory and mate acquisition differs among individuals and the possible effect on lifetime fitness

Learning to work together: designing a multi-user virtual reality game for social collaboration and perspective-taking for children with autism

Children with Autism Spectrum Disorders (ASD) find it difficult to engage in reciprocal, shared behaviours and technology could be particularly helpful in supporting children’s motivations and skills in this area. Designing educational technologies for children with ASD requires the integration of a complex range of factors including pedagogical and cognitive theories; the affordances of the technology; and the real-world contexts of use. This paper illustrates how these factors informed the design of a novel collaborative virtual reality environment (CVE) for supporting communicative perspective-taking skills for high-functioning children with ASD. Findings from a small-scale study involving eight typically developing (TD) children (aged 8 years) and six children with ASD (verbal mental age 9 years) are also reported. Children with ASD were supported to be reciprocal and collaborative in their responses, suggesting that this CVE could form the basis for a useful technology-based educational intervention

Design and methods for a randomized clinical trial comparing three outreach efforts to improve screening mammography adherence

<p>Abstract</p> <p>Background</p> <p>Despite the demonstrated need to increase screening mammography utilization and strong evidence that mail and telephone outreach to women can increase screening, most managed care organizations have not adopted comprehensive outreach programs. The uncertainty about optimum strategies and cost effectiveness have retarded widespread acceptance. While 70% of women report getting a mammogram within the prior 2 years, repeat mammography rates are less than 50%. This 5-year study is conducted though a Central Massachusetts healthcare plan and affiliated clinic. All womenhave adequate health insurance to cover the test.</p> <p>Methods/Design</p> <p>This randomized study compares 3 arms: reminder letter alone; reminder letter plus reminder call; reminder letter plus a second reminder and booklet plus a counselor call. All calls provide women with the opportunity to schedule a mammogram in a reasonable time. The invention period will span 4 years and include repeat attempts. The counselor arm is designed to educate, motivate and counsel women in an effort to alleviate PCP burden.</p> <p>All women who have been in the healthcare plan for 24 months and who have a current primary care provider (PCP) and who are aged 51-84 are randomized to 1 of 3 arms. Interventions are limited to women who become ≥18 months from a prior mammogram. Women and their physicians may opt out of the intervention study.</p> <p>Measurement of completed mammograms will use plan billing records and clinic electronic records. The primary outcome is the proportion of women continuously enrolled for ≥24 months who have had ≥1 mammogram in the last 24 months. Secondary outcomes include the number of women who need repeat interventions. The cost effectiveness analysis will measure all costs from the provider perspective.</p> <p>Discussion</p> <p>So far, 18,509 women aged 51-84 have been enrolled into our tracking database and were randomized into one of three arms. At baseline, 5,223 women were eligible for an intervention. We anticipate that the outcome will provide firm data about the maximal effectiveness as well as the cost effectiveness of the interventions both for increasing the mammography rate and the repeat mammography rate.</p> <p>Trial registration</p> <p><url>http://clinicaltrials.gov/</url><a href="http://www.clinicaltrials.gov/ct2/show/NCT01332032">NCT01332032</a></p

Conceptualising fields of action for sustainable intensification A systematic literature review and application to regional case studies

[EN] After two decades of research on sustainable intensification (SI), namely securing food production on less environmental cost, heterogeneous understandings and perspectives prevail in a broad and partly fragmented scientific literature. Structuring and consolidating contributions to provide practice-oriented guidelines are lacking. The objectives of this study are to (1) comprehensively explore the academic SI literature, (2) propose an implementation-oriented conceptual framework, and (3) demonstrate its applicability for region-specific problem settings. In a systematic literature review of 349 papers covering the international literature of 20 years of SI research, we identified SI practices and analysed temporal, spatial and disciplinary trends and foci. Based on key SI practices, a conceptual framework was developed differentiating four fields of action from farm to regional and landscape scale and from land use to structural optimisation. Its applicability to derive region specific SI solutions was successfully tested through stakeholder processes in four European case studies. Disciplinary boundaries and the separation of the temporal and spatial strands in the literature prevent a holistic address of SI. This leads to the dominance of research describing SI practices in isolation, mainly on the farm scale. Coordinated actions on the regional scale and the coupling of multiple practices are comparatively un-derrepresented. Results from the case studies demonstrate that implementation is extremely context-sensitive and thus crucially depends on the situational knowledge of farmers and stakeholders. Although, there is no 'one size fits all' solution, practitioners in all regions identified the need for integrated solutions and common action to implement suitable SI strategies at the regional landscape level and in local ecosystems.This research was financially supported by the European Commission under grant agreement 652615 and conducted in the context of the ERA-Net FACCE SURPLUS project VITAL, with the national funders NWO (Netherlands), BMBF (Germany), INIA (Spain), ANR (France).Weltin, M.; Zasada, I.; Piorr, A.; Debolini, M.; Geniaux, G.; Moreno-Pérez, OM.; Scherer, L.... (2018). Conceptualising fields of action for sustainable intensification A systematic literature review and application to regional case studies. Agriculture Ecosystems & Environment. 257:68-80. https://doi.org/10.1016/j.agee.2018.01.023S688025