178 research outputs found
Circulating microRNAs Reveal Time Course of Organ Injury in a Porcine Model of Acetaminophen-Induced Acute Liver Failure
- Author
- A O'Riordan
- A Turchinovich
- AB Imaeda
- AM Larson
- AM Reddy
- B Ekser
- Carolina Palacios Jimenez
- CD Williams
- CL Andersen
- D Mladinov
- Diego Calvisi
- DJ Antoine
- E Cholongitas
- F Martino
- Fausto Andreola
- G Szabo
- Hatim Alibhai
- HT Zhu
- J Hellemans
- J Vandesompele
- JG O'Grady
- JK Moore
- K John
- K Purins
- K Wang
- Karla C. L. Lee
- KC Lee
- Lewis PJ Starkey
- Luisa A. Baker
- M Karali
- M Lagos-Quintana
- M Weiland
- ML Bajt
- MR McGill
- MW Pfaffl
- N Silver
- Nathan A. Davies
- O Timoneda
- O Timoneda
- OF Laterza
- P Gilje
- P Landgraf
- Pamela J. Leckie
- PS Mitchell
- Q Ge
- R Bellomo
- Rajeshwar P. Mookerjee
- Rajiv Jalan
- RL Mehta
- RT Stravitz
- S Bala
- T Kawai
- W Bernal
- WE Hoffman
- WM Lee
- X Chen
- Y Sun
- Y Wang
- Y Zhang
- Yu-Mei Chang
- YW Kong
- Publication venue
- 'Public Library of Science (PLoS)'
- Publication date
- 27/05/2015
- Field of study
Acute liver failure is a rare but catastrophic condition which can progress rapidly to multi-organ failure. Studies investigating the onset of individual organ injury such as the liver, kidneys and brain during the evolution of acute liver failure, are lacking. MicroRNAs are short, non-coding strands of RNA that are released into the circulation following tissue injury. In this study, we have characterised the release of both global microRNA and specific microRNA species into the plasma using a porcine model of acetaminophen-induced acute liver failure. Pigs were induced to acute liver failure with oral acetaminophen over 19h±2h and death occurred 13h±3h thereafter. Global microRNA concentrations increased 4h prior to acute liver failure in plasma (P<0.0001) but not in isolated exosomes, and were associated with increasing plasma levels of the damage-associated molecular pattern molecule, genomic DNA (P<0.0001). MiR122 increased around the time of onset of acute liver failure (P<0.0001) and was associated with increasing international normalised ratio (P<0.0001). MiR192 increased 8h after acute liver failure (P<0.0001) and was associated with increasing creatinine (P<0.0001). The increase in miR124-1 occurred concurrent with the pre-terminal increase in intracranial pressure (P<0.0001) and was associated with decreasing cerebral perfusion pressure (P<0.002)
The definition and classification of pneumonia
- Author
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Measurement of the cross-section of high transverse momentum vector bosons reconstructed as single jets and studies of jet substructure in pp collisions at √s = 7 TeV with the ATLAS detector
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- Abajyan T
- Abbott B
- Abdallah J
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- Abramowicz H
- Abreu H
- Abulaitia Y
- Acharya BS
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- Zhemchugov A
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- Publication venue
- 'IOP Publishing'
- Publication date
- 01/01/2014
- Field of study
This paper presents a measurement of the cross-section for high transverse momentum W and Z bosons produced in pp collisions and decaying to all-hadronic final states. The data used in the analysis were recorded by the ATLAS detector at the CERN Large Hadron Collider at a centre-of-mass energy of √s = 7 TeV;{\rm Te}{\rm V}andcorrespondtoanintegratedluminosityof4.6\;{\rm f}{{{\rm b}}^{-1}}.ThemeasurementisperformedbyreconstructingtheboostedWorZbosonsinsinglejets.ThereconstructedjetmassisusedtoidentifytheWandZbosons,andajetsubstructuremethodbasedonenergyclusterinformationinthejetcentre−of−massframeisusedtosuppressthelargemulti−jetbackground.Thecross−sectionforeventswithahadronicallydecayingWorZboson,withtransversemomentum{{p}_{{\rm T}}}\gt 320\;{\rm Ge}{\rm V}andpseudorapidity|\eta |\lt 1.9,ismeasuredtobe{{\sigma }_{W+Z}}=8.5\pm 1.7$ pb and is compared to next-to-leading-order calculations. The selected events are further used to study jet grooming techniques
Search for direct pair production of the top squark in all-hadronic final states in proton-proton collisions at s√=8 TeV with the ATLAS detector
- Author
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- Abbott B
- Abdallah J
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- Wosiek BK
- Wotschack J
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- Yusuff I
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- Zaidan R
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- Zanzi D
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- Zeman M
- Zemla A
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- Zenin O
- Zenis T
- Zerwas D
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- Zhang Z
- Zhao Z
- Zhemchugov A
- Zhong J
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- Zhukov K
- Zibell A
- Zieminska D
- Zimine NI
- Zimmermann C
- Zimmermann R
- Zimmermann S
- Zimmermann S
- Zinonos Z
- Ziolkowski M
- Zobernig G
- Zoccoli A
- zur Nedden M
- Zurzolo G
- Zutshi V
- Zwalinski L
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 01/01/2014
- Field of study
The results of a search for direct pair production of the scalar partner to the top quark using an integrated luminosity of 20.1fb−1 of proton–proton collision data at √s = 8 TeV recorded with the ATLAS detector at the LHC are reported. The top squark is assumed to decay via t˜→tχ˜01 or t˜→ bχ˜±1 →bW(∗)χ˜01 , where χ˜01 (χ˜±1 ) denotes the lightest neutralino (chargino) in supersymmetric models. The search targets a fully-hadronic final state in events with four or more jets and large missing transverse momentum. No significant excess over the Standard Model background prediction is observed, and exclusion limits are reported in terms of the top squark and neutralino masses and as a function of the branching fraction of t˜ → tχ˜01 . For a branching fraction of 100%, top squark masses in the range 270–645 GeV are excluded for χ˜01 masses below 30 GeV. For a branching fraction of 50% to either t˜ → tχ˜01 or t˜ → bχ˜±1 , and assuming the χ˜±1 mass to be twice the χ˜01 mass, top squark masses in the range 250–550 GeV are excluded for χ˜01 masses below 60 GeV
Search for pair-produced long-lived neutral particles decaying to jets in the ATLAS hadronic calorimeter in ppcollisions at √s=8TeV
- Author
- Aad G
- Abbott B
- Abdallah J
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- Aben R
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- Seuster R
- Severini H
- Sfiligoj T
- Sforza F
- Sfyrla A
- Shabalina E
- Shamim M
- Shan LY
- Shang R
- Shank JT
- Shapiro M
- Shatalov PB
- Shaw K
- Shehu CY
- Sherwood P
- Shi L
- Shimizu S
- Shimmin CO
- Shimojima M
- Shiyakova M
- Shmeleva A
- Shochet MJ
- Short D
- Shrestha S
- Shulga E
- Shupe MA
- Shushkevich S
- Sicho P
- Sidiropoulou O
- Sidorov D
- Sidoti A
- Siegert F
- Sijacki D
- Silva J
- Silver Y
- Silverstein D
- Silverstein SB
- Simak V
- Simard O
- Simic L
- Simion S
- Simioni E
- Simmons B
- Simoniello R
- Simonyan M
- Sinervo P
- Sinev NB
- Sipica V
- Siragusa G
- Sircar A
- Sisakyan AN
- Sivoklokov SY
- Sjoelin J
- Sjursen TB
- Skottowe HP
- Skovpen KY
- Skubic P
- Slater M
- Slavicek T
- Sliwa K
- Smakhtin V
- Smart BH
- Smestad L
- Smirnov SY
- Smirnov Y
- Smirnova LN
- Smirnova O
- Smith KM
- Smizanska M
- Smolek K
- Snesarev AA
- Snidero G
- Snyder S
- Sobie R
- Socher F
- Soffer A
- Soh DA
- Solans CA
- Solar M
- Solc J
- Soldatov EY
- Soldevila U
- Solodkov AA
- Soloshenko A
- Solovyanov OV
- Solovyev V
- Sommer P
- Song HY
- Soni N
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- Sopczak A
- Sopko B
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- Spettel F
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- Spousta M
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- Spurlock B
- St Denis RD
- Staerz S
- Stahlman J
- Stamen R
- Stamm S
- Stanecka E
- Stanek RW
- Stanescu C
- Stanescu-Bellu M
- Stanitzki MM
- Stapnes S
- Starchenko EA
- Stark J
- Staroba P
- Starovoitov P
- Staszewski R
- Stavina P
- Steinberg P
- Stelzer B
- Stelzer HJ
- Stelzer-Chilton O
- Stenzel H
- Stern S
- Stewart GA
- Stillings JA
- Stockton MC
- Stoebe M
- Stoicea G
- Stolte P
- Stonjek S
- Stradling AR
- Straessner A
- Stramaglia ME
- Strandberg J
- Strandberg S
- Strandlie A
- Strauss E
- Strauss M
- Strizenec P
- Stroehmer R
- Strom DM
- Stroynowski R
- Strubig A
- Stucci SA
- Stugu B
- Styles NA
- Su D
- Su J
- Subramaniam R
- Succurro A
- Sugaya Y
- Suhr C
- Suk M
- Sulin VV
- Sultansoy S
- Sumida T
- Sun S
- Sun X
- Sundermann JE
- Suruliz K
- Susinno G
- Sutton MR
- Suzuki Y
- Svatos M
- Swedish S
- Swiatlowski M
- Sykora I
- Sykora T
- Ta D
- Taccini C
- Tackmann K
- Taenzer J
- Taffard A
- Tafirout R
- Taiblum N
- Takai H
- Takashima R
- Takeda H
- Takeshita T
- Takubo Y
- Talby M
- Talyshev AA
- Tam JYC
- Tan KG
- Tanaka J
- Tanaka R
- Tanaka S
- Tanaka S
- Tanasijczuk AJ
- Tannenwald BB
- Tannoury N
- Tapprogge S
- Tarem S
- Tarrade F
- Tartarelli GF
- Tas P
- Tasevsky M
- Tashiro T
- Tassi E
- Tayalati Y
- Taylor FE
- Taylor GN
- Taylor W
- Tehrani FS
- Teischinger FA
- Teixeira-Dias P
- Temming KK
- Ten Kate H
- Teng PK
- Teoh JJ
- Terada S
- Terashi K
- Terron J
- Terzo S
- Testa M
- Teuscher RJ
- Therhaag J
- Theveneaux-Pelzer T
- Thomas JP
- Thomas-Wilsker J
- Thompson AS
- Thompson EN
- Thompson PD
- Thompson PD
- Thompson RJ
- Thomsen LA
- Thomson E
- Thomson M
- Thong WM
- Thun RP
- Tian F
- Tibbetts MJ
- Tikhomirov VO
- Tikhonov YA
- Timoshenko S
- Tiouchichine E
- Tipton P
- Tisserant S
- Todorov T
- Todorova-Nova S
- Toggerson B
- Tojo J
- Tokar S
- Tokushuku K
- Tollefson K
- Tolley E
- Tomlinson L
- Tomoto M
- Tompkins L
- Toms K
- Topilin ND
- Toro RC
- Torregrosa EF
- Torrence E
- Torres H
- Torro Pastor E
- Toth J
- Touchard F
- Tovey DR
- Tran HL
- Trefzger T
- Tremblet L
- Tricoli A
- Trigger IM
- Trincaz-Duvoid S
- Tripiana MF
- Trischuk W
- Trocme B
- Troncon C
- Trottier-McDonald M
- Trovatelli M
- True P
- Trzebinski M
- Trzupek A
- Tsarouchas C
- Tseng JC-L
- Tsiareshka PV
- Tsionou D
- Tsipolitis G
- Tsirintanis N
- Tsiskaridze S
- Tsiskaridze V
- Tskhadadze EG
- Tsukerman I
- Tsulaia V
- Tsuno S
- Tsybychev D
- Tudorache A
- Tudorache V
- Tuna AN
- Tupputi SA
- Turchikhin S
- Turecek D
- Turra R
- Tuts PM
- Tykhonov A
- Tylmad M
- Tyndel M
- Uchida K
- Ueda I
- Ueno R
- Ughetto M
- Ugland M
- Uhlenbrock M
- Ukegawa F
- Unal G
- Undrus A
- Unel G
- Ungaro FC
- Unno Y
- Unverdorben C
- Urbaniec D
- Urquijo P
- Usai G
- Usanova A
- Vacavant L
- Vacek V
- Vachon B
- Valencic N
- Valentinetti S
- Valero A
- Valery L
- Valkar S
- Vallecorsa S
- Van Den Wollenberg W
- Van Der Deijl PC
- van der Geer R
- van der Graaf H
- Van Der Leeuw R
- van der Ster D
- Van Eldik N
- Van Gemmeren P
- van Huysduynen LH
- Van Nieuwkoop J
- van Vulpen I
- Van Woerden MC
- Vanadia M
- Vandelli W
- Vanguri R
- Vaniachine A
- Vankov P
- Vannucci F
- Vaque FV
- Vardanyan G
- Vari R
- Varnes EW
- Varol T
- Varouchas D
- Vartapetian A
- Varvell KE
- Vazeille F
- Vazquez JGP
- Veatch J
- Veloso F
- Velz T
- Veneziano S
- Ventura A
- Ventura D
- Venturi M
- Venturi N
- Venturini A
- Vercesi V
- Verducci M
- Verkerke W
- Vermeulen JC
- Verzini MJA
- Vest A
- Vetterli MC
- Viazlo O
- Vichou I
- Vickey T
- Viehhauser GHA
- Viel S
- Vigne R
- Villa M
- Vilucchi E
- Vincter MG
- Vinogradov VB
- Virzi J
- Vivarelli I
- Vlachos S
- Vladoiu D
- Vlasak M
- Vogel A
- Vokac P
- Volpi G
- Volpi M
- von der Schmitt H
- von Radziewski H
- von Toerne E
- Vorobel V
- Vorobev K
- Vos M
- Voss R
- Vossebeld JH
- Vranjes N
- Vrba V
- Vreeswijk M
- Vuanh T
- Vuillermet R
- Vukotic I
- Vykydal Z
- Wagner P
- Wagner W
- Wahlberg H
- Wahrmund S
- Wakabayashi J
- Walder J
- Walker R
- Walkowiak W
- Wall R
- Waller P
- Walls FMG
- Walsh B
- Wang C
- Wang C
- Wang F
- Wang H
- Wang H
- Wang J
- Wang J
- Wang K
- Wang R
- Wang SM
- Wang T
- Wang X
- Wanotayaroj C
- Warburton A
- Ward CP
- Wardrope DR
- Warsinsky M
- Washbrook A
- Wasicki C
- Watkins PM
- Watson AT
- Watson IJ
- Watson MF
- Watts G
- Watts S
- Waugh BM
- Webb S
- Weber MS
- Weber SW
- Webster JS
- Weidberg AR
- Weigell P
- Weinert B
- Weingarten J
- Weiser C
- Weits H
- Wells PS
- Wemans ADV
- Wenaus T
- Wendland D
- Weng Z
- Wengler T
- Wenig S
- Wermes N
- Werner M
- Werner P
- Wessels M
- Wetter J
- Whalen K
- White A
- White MJ
- White R
- White S
- Whiteson D
- Wicke D
- Wickens FJ
- Wiedenmann W
- Wielers M
- Wienemann P
- Wiglesworth C
- Wiik-Fuchs LAM
- Wijeratne PA
- Wildauer A
- Wildt MA
- Wilkens HG
- Will JZ
- Williams HH
- Williams S
- Willis C
- Willocq S
- Wilson A
- Wilson JA
- Wingerter-Seez I
- Winklmeier F
- Winter BT
- Wittgen M
- Wittig T
- Wittkowski J
- Wollstadt SJ
- Wolter MW
- Wolters H
- Wong KHY
- Wosiek BK
- Wotschack J
- Woudstra MJ
- Wozniak KW
- Wright M
- Wu M
- Wu SL
- Wu X
- Wu Y
- Wulf E
- Wyatt TR
- Wynne BM
- Xella S
- Xiao M
- Xu D
- Xu L
- Yabsley B
- Yacoob S
- Yakabe R
- Yamada M
- Yamaguchi H
- Yamaguchi Y
- Yamamoto A
- Yamamoto K
- Yamamoto S
- Yamamura T
- Yamanaka T
- Yamauchi K
- Yamazaki Y
- Yan Z
- Yang H
- Yang H
- Yang UK
- Yang Y
- Yanush S
- Yao L
- Yao W-M
- Yasu Y
- Yatsenko E
- Ye J
- Ye S
- Yeletskikh I
- Yen AL
- Yildirim E
- Yildiz HD
- Yilmaz M
- Yoosoofmiya R
- Yorita K
- Yoshida R
- Yoshihara K
- Young C
- Young CJS
- Youssef S
- Yu DR
- Yu J
- Yu J
- Yu JM
- Yuan L
- Yurkewicz A
- Yusuff I
- Zabinski B
- Zaidan R
- Zaitsev AM
- Zaman A
- Zambito S
- Zanello L
- Zanzi D
- Zeitnitz C
- Zeman M
- Zemla A
- Zengel K
- Zenin O
- Zenis T
- Zerwas D
- Zhang D
- Zhang F
- Zhang H
- Zhang J
- Zhang L
- Zhang X
- Zhang Z
- Zhao Z
- Zhemchugov A
- Zhong J
- Zhou B
- Zhou L
- Zhou N
- Zhu CG
- Zhu H
- Zhu J
- Zhu Y
- Zhuang X
- Zhukov K
- Zibell A
- Zieminska D
- Zimine NI
- Zimmermann C
- Zimmermann R
- Zimmermann S
- Zimmermann S
- Zinonos Z
- Ziolkowski M
- Zobernig G
- Zoccoli A
- zur Nedden M
- Zurzolo G
- Zutshi V
- Zwalinski L
- Publication venue
- 'Elsevier BV'
- Publication date
- 01/01/2014
- Field of study
The ATLAS detector at the Large Hadron Collider at CERN is used to search for the decay of a scalar boson to a pair of long-lived particles, neutral under the Standard Model gauge group, in 20.3fb−1of data collected in proton–proton collisions at √s=8TeV. This search is sensitive to long-lived particles that decay to Standard Model particles producing jets at the outer edge of the ATLAS electromagnetic calorimeter or inside the hadronic calorimeter. No significant excess of events is observed. Limits are reported on the product of the scalar boson production cross section times branching ratio into long-lived neutral particles as a function of the proper lifetime of the particles. Limits are reported for boson masses from 100 GeVto 900 GeV, and a long-lived neutral particle mass from 10 GeVto 150 GeV
Neighbourhood perceptions of physical activity: a qualitative study
- Author
- A Bandura
- A Bandura
- A Strauss
- A Vuillemin
- AP Ribera
- B Duvekot Latham
- B Giles-Corti
- BE Saelens
- C Foster
- C Foster
- Catherine Woods
- CJ Armitage
- CJ Armitage
- D Carless
- D Crone
- D Lupton
- D Lupton
- DR Weiss
- DW Brown
- G Bozionelos
- GC Kloek
- I Ajzen
- I Ajzen
- I De Bourdeaudhuij
- Ivan J Perry
- J Salmon
- J Seaton
- JF Sallis
- JF Sallis
- JM Kearney
- K Ball
- K Biddle
- K Kelley
- K Tones
- KJ Calfas
- KJ Fisher
- KS Courneya
- L Burgoyne
- LH McNeill
- Louise N Burgoyne
- M Duncan
- M O'Brien
- M O'Grady
- M Siegal
- MS Hagger
- N Owen
- NL Chatzisarantis
- P Kotler
- PC Hallal
- RJ Shepard
- RK Dishman
- Rosarie Coleman
- RR Suminiski
- RS Barbour
- RT Anderson
- S Allender
- S Nettleton
- S Wilcox
- SG Brown
- T Fahey
- T Pilkora
- T Stahl
- VS Conn
- WC Taylor
- WC Taylor
- Publication venue
- BioMed Central
- Publication date
- 01/01/2008
- Field of study
Background: Effective promotion of physical activity in low income communities is essential given the high prevalence of inactivity in this sector. Methods: This study explored determinants of engaging in physical activity in two Irish city based neighbourhoods using a series of six focus groups and twenty five interviews with adult residents. Data were analysed using constant comparison methods with a grounded theory approach. Results: Study findings centred on the concept of 'community contentment'. Physical activity was related to the degree of contentment/comfort within the 'self' and how the 'self' interacts within the neighbourhood. Contemporary focus on outer bodily appearance and pressure to comply with societal expectations influenced participants' sense of confidence and competence. Social interaction, involvement, and provision of adequate social supports were viewed as positive and motivating. However normative expectations appeared to affect participants' ability to engage in physical activity, which may reflect the 'close knit' culture of the study neighbourhoods. Access to suitable local facilities and amenities such as structured and pleasant walking routes was regarded as essential. Indeed participants considered walking to be their preferred form of physical activity which may relate to the minimal skill requirement, ease of access and low financial costs incurred. Conclusion: In the context of physical activity, health promoters need to be conscious of the difficulties that individuals feel in relation to bodily appearance and the pressure to comply with societal standards. This may be particularly relevant in low income settings where insufficient allocation of resources and social supports means that individuals have less opportunity to attend to physical activity than individuals living in higher income settings
High school drinking mediates the relationship between parental monitoring and college drinking: A longitudinal analysis
- Author
- A Reifman
- Amelia M Arria
- BB Brown
- CM Arata
- CW Metzler
- DA Cohen
- DM Capaldi
- DV Ary
- E Bernstein
- ER Weitzman
- Eric D Wish
- GM Barnes
- HD Chilcoat
- HS Chilcoat
- J Cohen
- J Guo
- J Jung
- J Schulenberg
- J Yu
- JA Patock-Peckham
- JJ Lloyd
- JP Read
- JS Baer
- KA Kerns
- Kathryn B Vincent
- Kevin E O'Grady
- KG Hill
- KH Beck
- Kimberly M Caldeira
- KJ Sher
- KL Kumpfer
- KW Griffin
- LD Johnston
- LD Johnston
- LT Wu
- MD Resnick
- MT French
- National Center for Addiction and Substance Abuse at Columbia University
- National Institute on Alcohol Abuse and Alcoholism
- PJ Cook
- R Turrisi
- RJ Williams
- RT Brown
- RW Hingson
- SA Brown
- SE Foster
- SG Nash
- Substance Abuse and Mental Health Services Administration
- T Jacob
- Task Force of the National Advisory Council on Alcohol Abuse and Alcoholism
- V Guilamo-Ramos
- Vanessa Kuhn
- WS Slutske
- Publication venue
- BioMed Central
- Publication date
- 01/03/2008
- Field of study
<p>Abstract</p> <p>Background</p> <p>College drinking is a significant public health problem. Although parental monitoring and supervision reduces the risk for alcohol consumption among younger adolescents, few studies have investigated the impact of earlier parental monitoring on later college drinking. This study examined whether parental monitoring indirectly exerts a protective effect on college drinking by reducing high school alcohol consumption.</p> <p>Methods</p> <p>A longitudinal cohort of 1,253 male and female students, ages 17 to 19, attending a large, public, mid-Atlantic university was studied at two time points. First, data on high school parental monitoring and alcohol consumption were gathered via questionnaire during the summer prior to college entry. Second, during the first year of college, past-year alcohol consumption was measured via a personal interview. Multiple regression models tested the relationship between parental monitoring and past year alcohol use (i.e., number of drinks per drinking day).</p> <p>Results</p> <p>Holding constant demographics, SAT score, and religiosity, parental monitoring had a significant protective effect on both high school and college drinking level. However, the association between parental monitoring and college drinking level became non-significant once high school drinking level was held constant.</p> <p>Conclusion</p> <p>While parental monitoring did not directly influence college alcohol consumption, evidence for mediation was observed, whereby parental monitoring had an indirect influence on college drinking through reductions in high school drinking. Initiatives that promote effective parenting might be an important strategy to curb high-risk drinking among older adolescents. More research is needed to understand the nature and degree of parent-child communication that is necessary to extend the protective influence of parents into the college years.</p
Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer
- Author
- Aanensen DM
- Aggarwal D
- Amato R
- Ariani CV
- Barrett JC
- Bashton M
- Beckett AH
- Beckwith SM
- Bonsall D
- Bucca G
- Bull M
- Burns PJ
- Byott M
- Carabelli AM
- Carabelli AM
- Colquhoun R
- Connor TR
- Corden S
- Cortes N
- Cottrell S
- Cox M
- Curran MD
- de Silva TI
- Eastick K
- Fairley DJ
- Frampton D
- Glaysher S
- Golubchik T
- Gonçalves S
- Goodfellow IG
- Gunson RN
- Hamilton WL
- Harrison EM
- Harrison EM
- Harvey WT
- Hassan-Ibrahim MO
- Holden MTG
- Houlihan C
- Hsu NS
- Hughes J
- Jackson B
- Jackson DK
- Jackson LM
- Johnston I
- Kwiatkowski D
- Langford CF
- Levett LJ
- Liggett S
- Lillie PJ
- Livett R
- Loman NJ
- Loose MW
- Loveson KF
- Ludden C
- Lythgoe K
- Mahungu TW
- Martinez Nunez RT
- Moore C
- Moore N
- Moses S
- Murray A
- Nastouli E
- Nebbia G
- Nicholls S
- Nielsen M
- O'Grady J
- Orton R
- Osman H
- Pacchiarini N
- Parker MD
- Parmar S
- Peacock SJ
- Peacock TP
- Pope CF
- Prieto JA
- Rambaut A
- Rambaut A
- Randell P
- Robertson DL
- Robson SC
- Rogan F
- Saeed K
- Shepherd JG
- Sheridan LA
- Sillitoe J
- Singleton D
- Smith CP
- Smith DL
- Snell LB
- Templeton KE
- Thomas C
- Thomson EC
- Torok ME
- Underwood AP
- Wang D
- Watkins J
- Williams C
- Witney AA
- Wright DW
- Publication venue
- 'Oxford University Press (OUP)'
- Publication date
- 01/01/2022
- Field of study
COG-UK Mutation Explorer (COG-UK-ME, http://sars2.cvr.gla.ac.uk/cog-uk/-last accessed date 16 March 2022) is a web resource that displays knowledge and analyses on SARS-CoV-2 virus genome mutations and variants circulating in the UK, with a focus on the observed amino acid replacements that have an antigenic role in the context of the human humoral and cellular immune response. This analysis is based on more than 2 million genome sequences (as of March 2022) for UK SARS-CoV-2 data held in the CLIMB-COVID centralised data environment. COG-UK-ME curates these data and displays analyses that are cross-referenced to experimental data collated from the primary literature. The aim is to track mutations of immunological importance that are accumulating in current variants of concern and variants of interest that could alter the neutralising activity of monoclonal antibodies (mAbs), convalescent sera, and vaccines. Changes in epitopes recognised by T cells, including those where reduced T cell binding has been demonstrated, are reported. Mutations that have been shown to confer SARS-CoV-2 resistance to antiviral drugs are also included. Using visualisation tools, COG-UK-ME also allows users to identify the emergence of variants carrying mutations that could decrease the neutralising activity of both mAbs present in therapeutic cocktails, e.g. Ronapreve. COG-UK-ME tracks changes in the frequency of combinations of mutations and brings together the curated literature on the impact of those mutations on various functional aspects of the virus and therapeutics. Given the unpredictable nature of SARS-CoV-2 as exemplified by yet another variant of concern, Omicron, continued surveillance of SARS-CoV-2 remains imperative to monitor virus evolution linked to the efficacy of therapeutics
Spatial growth rate of emerging SARS-CoV-2 lineages in England, September 2020-December 2021
- Author
- Aanensen DM
- Aggarwal D
- Aigrain L
- Amato R
- Ariani CV
- Barrett JC
- Bashton M
- Bassett AR
- Beckett AH
- Beckwith SM
- Bonsall D
- Bucca G
- Bull M
- Burns PJ
- Byott M
- Carabelli AM
- Chand M
- Cliff AD
- Connor TR
- Corden S
- Cortes N
- Cottrell S
- Curran MD
- Darby AC
- de Angelis D
- de Silva TI
- Eastick K
- Fairley DJ
- Frampton D
- Glaysher S
- Golubchik T
- Gonçalves S
- Goodfellow IG
- Gunson RN
- Gupta RK
- Hamilton WL
- Harrison EM
- Hassan-Ibrahim MO
- Holden MTG
- Houlihan C
- Jackson DK
- Jackson LM
- Johnston I
- Kwiatkowski D
- Langford CF
- Levett LJ
- Liggett S
- Lillie PJ
- Livett R
- Loman NJ
- Loose MW
- Loveson KF
- Ludden C
- Lythgoe K
- Mahungu TW
- Martincorena I
- Martinez Nunez RT
- Moore C
- Moore N
- Moses S
- Murray A
- Nastouli E
- Nebbia G
- Nicholls S
- O'Grady J
- Osman H
- Pacchiarini N
- Page AJ
- Parker MD
- Parmar S
- Paterson S
- Pope CF
- Prieto JA
- Pybus OG
- Rambaut A
- Randell P
- Robertson DL
- Robson SC
- Rogan F
- Saeed K
- Shepherd JG
- Sheridan LA
- Sillitoe J
- Simpson DA
- Singleton D
- Smallman-Raynor MR
- Smith CP
- Smith DL
- Snell LB
- Templeton KE
- Thomas C
- Thomson EC
- Torok ME
- Underwood AP
- Volz EM
- Wang D
- Watkins J
- Williams C
- Witney AA
- Wong N
- Publication venue
- 'Cambridge University Press (CUP)'
- Publication date
- 01/01/2022
- Field of study
This paper uses a robust method of spatial epidemiological analysis to assess the spatial growth rate of multiple lineages of SARS-CoV-2 in the local authority areas of England, September 2020-December 2021. Using the genomic surveillance records of the COVID-19 Genomics UK (COG-UK) Consortium, the analysis identifies a substantial (7.6-fold) difference in the average rate of spatial growth of 37 sample lineages, from the slowest (Delta AY.4.3) to the fastest (Omicron BA.1). Spatial growth of the Omicron (B.1.1.529 and BA) variant was found to be 2.81× faster than the Delta (B.1.617.2 and AY) variant and 3.76× faster than the Alpha (B.1.1.7 and Q) variant. In addition to AY.4.2 (a designated variant under investigation, VUI-21OCT-01), three Delta sublineages (AY.43, AY.98 and AY.120) were found to display a statistically faster rate of spatial growth than the parent lineage and would seem to merit further investigation. We suggest that the monitoring of spatial growth rates is a potentially valuable adjunct to outbreak response procedures for emerging SARS-CoV-2 variants in a defined population
Search for new phenomena in final states with an energetic jet and large missing transverse momentum in pp collisions at root s = 8 TeV with the ATLAS detector (vol 75, 299, 2015)
- Author
- Aad G
- Abbott B
- Abdallah J
- Abdinov O
- Aben R
- Abi B
- Abolins M
- AbouZeid OS
- Abramowicz H
- Abreu H
- Abreu R
- Abulaiti Y
- Acharya BS
- Adam ER
- Adamczyk L
- Adams DL
- Adelman J
- Adomeit S
- Adye T
- Agatonovic-Jovin T
- Aguilar-Saavedra JA
- Agustoni M
- Ahlen SP
- Ahmadov F
- Aielli G
- Akerstedt H
- Akesson TPA
- Akimoto G
- Akimov AV
- Alberghi GL
- Albert J
- Albrand S
- Alconada Verzini MJ
- Aleksa M
- Aleksandrov IN
- Alexa C
- Alexander G
- Alexandre G
- Alexopoulos T
- Alhroob M
- Alimonti G
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- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 01/01/2015
- Field of study
Results of a search for new phenomena in final states with an energetic jet and large missing transverse momentum are reported. The search uses 20.3 fb−1 of √s=8 TeV data collected in 2012 with the ATLAS detector at the LHC. Events are required to have at least one jet with pT>120 GeV and no leptons. Nine signal regions are considered with increasing missing transverse momentum requirements between EmissT>150 GeV and EmissT>700 GeV. Good agreement is observed between the number of events in data and Standard Model expectations. The results are translated into exclusion limits on models with either large extra spatial dimensions, pair production of weakly interacting dark matter candidates, or production of very light gravitinos in a gauge-mediated supersymmetric model. In addition, limits on the production of an invisibly decaying Higgs-like boson leading to similar topologies in the final state are presented
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