Unveiling the atmospheres of giant exoplanets with an EChO-class mission

More than a thousand exoplanets have been discovered over the last decade. Perhaps more excitingly, probing their atmospheres has become possible. With current data we have glimpsed the diversity of exoplanet atmospheres that will be revealed over the coming decade. However, numerous questions concerning their chemical composition, thermal structure, and atmospheric dynamics remain to be answered. More observations of higher quality are needed. In the next years, the selection of a space-based mission dedicated to the spectroscopic characterization of exoplanets would revolutionize our understanding of the physics of planetary atmospheres. Such a mission was proposed to the ESA cosmic vision program in 2014. Our paper is therefore based on the planned capabilities of the Exoplanet Characterization Observatory (EChO), but it should equally apply to any future mission with similar characteristics. With its large spectral coverage (0.4 − 16 μm), high spectral resolution (λ/Δλ > 300 below 5 μm and λ/Δλ > 30 above 5 μm) and 1.5m mirror, a future mission such as EChO will provide spectrally resolved transit lightcurves, secondary eclipses lightcurves, and full phase curves of numerous exoplanets with an unprecedented signal-to-noise ratio. In this paper, we review some of today’s main scientific questions about gas giant exoplanets atmospheres, for which a future mission such as EChO will bring a decisive contribution

Unveiling the atmospheres of giant exoplanets with an EChO-class mission

More than a thousand exoplanets have been discovered over the last decade. Perhaps more excitingly, probing their atmospheres has become possible. With current data we have glimpsed the diversity of exoplanet atmospheres that will be revealed over the coming decade. However, numerous questions concerning their chemical composition, thermal structure, and atmospheric dynamics remain to be answered. More observations of higher quality are needed. In the next years, the selection of a space-based mission dedicated to the spectroscopic characterization of exoplanets would revolutionize our understanding of the physics of planetary atmospheres. Such a mission was proposed to the ESA cosmic vision program in 2014. Our paper is therefore based on the planned capabilities of the Exoplanet Characterization Observatory (EChO), but it should equally apply to any future mission with similar characteristics. With its large spectral coverage ($4-16\, \rm{\mu m}$), high spectral resolution ($\Delta\lambda/\lambda>300$ below $5\,\rm{\mu m}$ and $\Delta\lambda/\lambda>30$ above $5\,\rm{\mu m}$) and $1.5\rm{m}$ mirror, a future mission such as EChO will provide spectrally resolved transit lightcurves, secondary eclipses lightcurves, and full phase curves of numerous exoplanets with an unprecedented signal-to-noise ratio. In this paper, we review some of today's main scientific questions about gas giant exoplanets atmospheres, for which a future mission such as EChO will bring a decisive contribution.Comment: Accepted to the Experimental Journal of Astronom

vHOG, a multispecies vertebrate ontology of homologous organs groups

Motivation: Most anatomical ontologies are species-specific, whereas a framework for comparative studies is needed. We describe the vertebrate Homologous Organs Groups ontology, vHOG, used to compare expression patterns between species. Results: vHOG is a multispecies anatomical ontology for the vertebrate lineage. It is based on the HOGs used in the Bgee database of gene expression evolution. vHOG version 1.4 includes 1184 terms, follows OBO principles and is based on the Common Anatomy Reference Ontology (CARO). vHOG only describes structures with historical homology relations between model vertebrate species. The mapping to species-specific anatomical ontologies is provided as a separate file, so that no homology hypothesis is stated within the ontology itself. Each mapping has been manually reviewed, and we provide support codes and references when available. Availability and implementation: vHOG is available from the Bgee download site (http://bgee.unil.ch/), as well as from the OBO Foundry and the NCBO Bioportal websites. Contact: [email protected]; [email protected]

Causes and consequences of dispersal in biodiverse spatially structured systems: what is old and what is new?

Dispersal is a well recognized driver of ecological and evolutionary dynamics, and simultaneously an evolving trait. Dispersal evolution has traditionally been studied in single-species metapopulations so that it remains unclear how dispersal evolves in spatially structured communities and food webs. Since most natural systems are biodiverse and spatially structured, and thus affected by dispersal and its evolution, this knowledge gap should be bridged. Here we discuss whether knowledge established in single-species systems holds in spatially structured multispecies systems and highlight generally valid and fundamental principles. Most biotic interactions form the ecological theatre for the evolutionary dispersal play because interactions mediate patterns of fitness expectations in space and time. While this allows for a simple transposition of certain known drivers to a multispecies context, other drivers may require more complex transpositions, or might not be transferred. We discuss an important quantitative modulator of dispersal evolution in the increased trait dimensionality of biodiverse meta-systems and an additional driver in co-dispersal. We speculate that scale and selection pressure mismatches due to co-dispersal, together with increased trait dimensionality may lead to slower and more "diffuse" evolution in biodiverse meta-systems. Open questions and potential consequences in both ecological and evolutionary terms call for more investigation

Eco-friendly synthesis of SiO2 nanoparticles confined in hard carbon: A promising material with unexpected mechanism for Li-ion batteries

Times Cited: 3Nita, Cristina Fullenwarth, Julien Monconduit, Laure Le Meins, Jean-Marc Fioux, Philippe Parmentier, Julien Ghimbeu, Camelia MateiGhimbeu, Camelia/N-7855-2015Ghimbeu, Camelia/0000-0003-3600-587731873-3891A fast, simple and environmentally friendly one-pot route to obtain carbon/SiO2 hybrid materials is reported in this work. This consists in simple mixture of carbon and silica precursors, followed by thermal annealing at different temperatures. An interpenetrating hybrid network composed of hard carbon and amorphous SiO2 nanoparticles (2–5 nm) homogeneously distributed was achieved. Increasing the annealing temperature from 600 °C up to 1200 °C, the material porosity and oxygen functional groups are gradually removed, while the amorphous nature of SiO2 is conserved. This allows to diminish the irreversible capacity during the first charge-discharge cycle and to increase the reversible capacity. An excellent cycling capability, with a reversible capacity up to 535 mA h/g at C/5 constant current rate was obtained for C/SiO2 materials used as anodes for Li-ion batteries. An atypical increase of the capacity during the first 50 cycles followed by a stable plateau up to 250 cycles was observed and related to electrolyte wettability limitation through the materials, particularly for those annealed at high temperatures which are more hydrophobic, less porous and the SiO2 nanoparticles less accessible. The SiO2 lithiation mechanism was evaluated by XRD, TEM and XPS post-mortem analyses and revealed the formation of reversible lithium silicate phases

Evolutionary ecology of dispersal in biodiverse spatially structured systems : what is old and what is new?

Dispersal is a well-recognized driver of ecological and evolutionary dynamics, and simultaneously an evolving trait. Dispersal evolution has traditionally been studied in single-species metapopulations so that it remains unclear how dispersal evolves in metacommunities and metafoodwebs, which are characterized by a multitude of species interactions. Since most natural systems are both species-rich and spatially structured, this knowledge gap should be bridged. Here, we discuss whether knowledge from dispersal evolutionary ecology established in single-species systems holds in metacommunities and metafoodwebs and we highlight generally valid and fundamental principles. Most biotic interactions form the backdrop to the ecological theatre for the evolutionary dispersal play because interactions mediate patterns of fitness expectations across space and time. While this allows for a simple transposition of certain known principles to a multispecies context, other drivers may require more complex transpositions, or might not be transferred. We discuss an important quantitative modulator of dispersal evolution-increased trait dimensionality of biodiverse meta-systems-and an additional driver: co-dispersal. We speculate that scale and selection pressure mismatches owing to co-dispersal, together with increased trait dimensionality, may lead to a slower and more 'diffuse' evolution in biodiverse meta-systems. Open questions and potential consequences in both ecological and evolutionary terms call for more investigation. This article is part of the theme issue 'Diversity-dependence of dispersal: interspecific interactions determine spatial dynamics'

A chemical survey of exoplanets with ARIEL

Thousands of exoplanets have now been discovered with a huge range of masses, sizes and orbits: from rocky Earth-like planets to large gas giants grazing the surface of their host star. However, the essential nature of these exoplanets remains largely mysterious: there is no known, discernible pattern linking the presence, size, or orbital parameters of a planet to the nature of its parent star. We have little idea whether the chemistry of a planet is linked to its formation environment, or whether the type of host star drives the physics and chemistry of the planet’s birth, and evolution. ARIEL was conceived to observe a large number (~1000) of transiting planets for statistical understanding, including gas giants, Neptunes, super-Earths and Earth-size planets around a range of host star types using transit spectroscopy in the 1.25–7.8 μm spectral range and multiple narrow-band photometry in the optical. ARIEL will focus on warm and hot planets to take advantage of their well-mixed atmospheres which should show minimal condensation and sequestration of high-Z materials compared to their colder Solar System siblings. Said warm and hot atmospheres are expected to be more representative of the planetary bulk composition. Observations of these warm/hot exoplanets, and in particular of their elemental composition (especially C, O, N, S, Si), will allow the understanding of the early stages of planetary and atmospheric formation during the nebular phase and the following few million years. ARIEL will thus provide a representative picture of the chemical nature of the exoplanets and relate this directly to the type and chemical environment of the host star. ARIEL is designed as a dedicated survey mission for combined-light spectroscopy, capable of observing a large and well-defined planet sample within its 4-year mission lifetime. Transit, eclipse and phase-curve spectroscopy methods, whereby the signal from the star and planet are differentiated using knowledge of the planetary ephemerides, allow us to measure atmospheric signals from the planet at levels of 10–100 part per million (ppm) relative to the star and, given the bright nature of targets, also allows more sophisticated techniques, such as eclipse mapping, to give a deeper insight into the nature of the atmosphere. These types of observations require a stable payload and satellite platform with broad, instantaneous wavelength coverage to detect many molecular species, probe the thermal structure, identify clouds and monitor the stellar activity. The wavelength range proposed covers all the expected major atmospheric gases from e.g. H2O, CO2, CH4 NH3, HCN, H2S through to the more exotic metallic compounds, such as TiO, VO, and condensed species. Simulations of ARIEL performance in conducting exoplanet surveys have been performed – using conservative estimates of mission performance and a full model of all significant noise sources in the measurement – using a list of potential ARIEL targets that incorporates the latest available exoplanet statistics. The conclusion at the end of the Phase A study, is that ARIEL – in line with the stated mission objectives – will be able to observe about 1000 exoplanets depending on the details of the adopted survey strategy, thus confirming the feasibility of the main science objectives.Peer reviewedFinal Published versio

Antimicrobial resistance among migrants in Europe: a systematic review and meta-analysis

BACKGROUND: Rates of antimicrobial resistance (AMR) are rising globally and there is concern that increased migration is contributing to the burden of antibiotic resistance in Europe. However, the effect of migration on the burden of AMR in Europe has not yet been comprehensively examined. Therefore, we did a systematic review and meta-analysis to identify and synthesise data for AMR carriage or infection in migrants to Europe to examine differences in patterns of AMR across migrant groups and in different settings. METHODS: For this systematic review and meta-analysis, we searched MEDLINE, Embase, PubMed, and Scopus with no language restrictions from Jan 1, 2000, to Jan 18, 2017, for primary data from observational studies reporting antibacterial resistance in common bacterial pathogens among migrants to 21 European Union-15 and European Economic Area countries. To be eligible for inclusion, studies had to report data on carriage or infection with laboratory-confirmed antibiotic-resistant organisms in migrant populations. We extracted data from eligible studies and assessed quality using piloted, standardised forms. We did not examine drug resistance in tuberculosis and excluded articles solely reporting on this parameter. We also excluded articles in which migrant status was determined by ethnicity, country of birth of participants' parents, or was not defined, and articles in which data were not disaggregated by migrant status. Outcomes were carriage of or infection with antibiotic-resistant organisms. We used random-effects models to calculate the pooled prevalence of each outcome. The study protocol is registered with PROSPERO, number CRD42016043681. FINDINGS: We identified 2274 articles, of which 23 observational studies reporting on antibiotic resistance in 2319 migrants were included. The pooled prevalence of any AMR carriage or AMR infection in migrants was 25·4% (95% CI 19·1-31·8; I2 =98%), including meticillin-resistant Staphylococcus aureus (7·8%, 4·8-10·7; I2 =92%) and antibiotic-resistant Gram-negative bacteria (27·2%, 17·6-36·8; I2 =94%). The pooled prevalence of any AMR carriage or infection was higher in refugees and asylum seekers (33·0%, 18·3-47·6; I2 =98%) than in other migrant groups (6·6%, 1·8-11·3; I2 =92%). The pooled prevalence of antibiotic-resistant organisms was slightly higher in high-migrant community settings (33·1%, 11·1-55·1; I2 =96%) than in migrants in hospitals (24·3%, 16·1-32·6; I2 =98%). We did not find evidence of high rates of transmission of AMR from migrant to host populations. INTERPRETATION: Migrants are exposed to conditions favouring the emergence of drug resistance during transit and in host countries in Europe. Increased antibiotic resistance among refugees and asylum seekers and in high-migrant community settings (such as refugee camps and detention facilities) highlights the need for improved living conditions, access to health care, and initiatives to facilitate detection of and appropriate high-quality treatment for antibiotic-resistant infections during transit and in host countries. Protocols for the prevention and control of infection and for antibiotic surveillance need to be integrated in all aspects of health care, which should be accessible for all migrant groups, and should target determinants of AMR before, during, and after migration. FUNDING: UK National Institute for Health Research Imperial Biomedical Research Centre, Imperial College Healthcare Charity, the Wellcome Trust, and UK National Institute for Health Research Health Protection Research Unit in Healthcare-associated Infections and Antimictobial Resistance at Imperial College London

Surgical site infection after gastrointestinal surgery in high-income, middle-income, and low-income countries: a prospective, international, multicentre cohort study

Background: Surgical site infection (SSI) is one of the most common infections associated with health care, but its importance as a global health priority is not fully understood. We quantified the burden of SSI after gastrointestinal surgery in countries in all parts of the world. Methods: This international, prospective, multicentre cohort study included consecutive patients undergoing elective or emergency gastrointestinal resection within 2-week time periods at any health-care facility in any country. Countries with participating centres were stratified into high-income, middle-income, and low-income groups according to the UN's Human Development Index (HDI). Data variables from the GlobalSurg 1 study and other studies that have been found to affect the likelihood of SSI were entered into risk adjustment models. The primary outcome measure was the 30-day SSI incidence (defined by US Centers for Disease Control and Prevention criteria for superficial and deep incisional SSI). Relationships with explanatory variables were examined using Bayesian multilevel logistic regression models. This trial is registered with ClinicalTrials.gov, number NCT02662231. Findings: Between Jan 4, 2016, and July 31, 2016, 13 265 records were submitted for analysis. 12 539 patients from 343 hospitals in 66 countries were included. 7339 (58·5%) patient were from high-HDI countries (193 hospitals in 30 countries), 3918 (31·2%) patients were from middle-HDI countries (82 hospitals in 18 countries), and 1282 (10·2%) patients were from low-HDI countries (68 hospitals in 18 countries). In total, 1538 (12·3%) patients had SSI within 30 days of surgery. The incidence of SSI varied between countries with high (691 [9·4%] of 7339 patients), middle (549 [14·0%] of 3918 patients), and low (298 [23·2%] of 1282) HDI (p < 0·001). The highest SSI incidence in each HDI group was after dirty surgery (102 [17·8%] of 574 patients in high-HDI countries; 74 [31·4%] of 236 patients in middle-HDI countries; 72 [39·8%] of 181 patients in low-HDI countries). Following risk factor adjustment, patients in low-HDI countries were at greatest risk of SSI (adjusted odds ratio 1·60, 95% credible interval 1·05–2·37; p=0·030). 132 (21·6%) of 610 patients with an SSI and a microbiology culture result had an infection that was resistant to the prophylactic antibiotic used. Resistant infections were detected in 49 (16·6%) of 295 patients in high-HDI countries, in 37 (19·8%) of 187 patients in middle-HDI countries, and in 46 (35·9%) of 128 patients in low-HDI countries (p < 0·001). Interpretation: Countries with a low HDI carry a disproportionately greater burden of SSI than countries with a middle or high HDI and might have higher rates of antibiotic resistance. In view of WHO recommendations on SSI prevention that highlight the absence of high-quality interventional research, urgent, pragmatic, randomised trials based in LMICs are needed to assess measures aiming to reduce this preventable complication