Translational outcomes in a full gene deletion of ubiquitin protein ligase E3A rat model of Angelman syndrome.

Angelman syndrome (AS) is a rare neurodevelopmental disorder characterized by developmental delay, impaired communication, motor deficits and ataxia, intellectual disabilities, microcephaly, and seizures. The genetic cause of AS is the loss of expression of UBE3A (ubiquitin protein ligase E6-AP) in the brain, typically due to a deletion of the maternal 15q11-q13 region. Previous studies have been performed using a mouse model with a deletion of a single exon of Ube3a. Since three splice variants of Ube3a exist, this has led to a lack of consistent reports and the theory that perhaps not all mouse studies were assessing the effects of an absence of all functional UBE3A. Herein, we report the generation and functional characterization of a novel model of Angelman syndrome by deleting the entire Ube3a gene in the rat. We validated that this resulted in the first comprehensive gene deletion rodent model. Ultrasonic vocalizations from newborn Ube3am-/p+ were reduced in the maternal inherited deletion group with no observable change in the Ube3am+/p- paternal transmission cohort. We also discovered Ube3am-/p+ exhibited delayed reflex development, motor deficits in rearing and fine motor skills, aberrant social communication, and impaired touchscreen learning and memory in young adults. These behavioral deficits were large in effect size and easily apparent in the larger rodent species. Low social communication was detected using a playback task that is unique to rats. Structural imaging illustrated decreased brain volume in Ube3am-/p+ and a variety of intriguing neuroanatomical phenotypes while Ube3am+/p- did not exhibit altered neuroanatomy. Our report identifies, for the first time, unique AS relevant functional phenotypes and anatomical markers as preclinical outcomes to test various strategies for gene and molecular therapies in AS

Domain knowledge-informed Synthetic fault sample generation with Health Data Map for cross-domain Planetary Gearbox Fault Diagnosis

Extensive research has been conducted on fault diagnosis of planetary gearboxes using vibration signals and deep learning (DL) approaches. However, DL-based methods are susceptible to the domain shift problem caused by varying operating conditions of the gearbox. Although domain adaptation and data synthesis methods have been proposed to overcome such domain shifts, they are often not directly applicable in real-world situations where only healthy data is available in the target domain. To tackle the challenge of extreme domain shift scenarios where only healthy data is available in the target domain, this paper proposes two novel domain knowledge-informed data synthesis methods utilizing the health data map (HDMap). The two proposed approaches are referred to as scaled CutPaste and FaultPaste. The HDMap is used to physically represent the vibration signal of the planetary gearbox as an image-like matrix, allowing for visualization of fault-related features. CutPaste and FaultPaste are then applied to generate faulty samples based on the healthy data in the target domain, using domain knowledge and fault signatures extracted from the source domain, respectively. In addition to generating realistic faults, the proposed methods introduce scaling of fault signatures for controlled synthesis of faults with various severity levels. A case study is conducted on a planetary gearbox testbed to evaluate the proposed approaches. The results show that the proposed methods are capable of accurately diagnosing faults, even in cases of extreme domain shift, and can estimate the severity of faults that have not been previously observed in the target domain.Comment: Under review / added arXiv identifie

Rate-equation calculations of the current flow through two-site molecular device and DNA-based junction

Here we present the calculations of incoherent current flowing through the two-site molecular device as well as the DNA-based junction within the rate-equation approach. Few interesting phenomena are discussed in detail. Structural asymmetry of two-site molecule results in rectification effect, which can be neutralized by asymmetric voltage drop at the molecule-metal contacts due to coupling asymmetry. The results received for poly(dG)-poly(dC) DNA molecule reveal the coupling- and temperature-independent saturation effect of the current at high voltages, where for short chains we establish the inverse square distance dependence. Besides, we document the shift of the conductance peak in the direction to higher voltages due to the temperature decrease.Comment: 12 pages, 6 figure

The Performance of ECMWF sub-seasonal forecasts to predict the Rainy Season Onset Dates in Vietnam

The onset of the rainy season is an important date for the mostly rain-fed agricultural practices in Vietnam. Sub-seasonal to seasonal (S2S) ensemble hindcasts from the European Centre for Medium-Range Weather Forecasts (ECMWF) are used to evaluate the predictability of the rainy season onset dates (RSODs) over five climatic sub-regions of Vietnam. The results show that the ECMWF model reproduces well the observed inter-annual variability of RSODs, with a high correlation ranging from 0.60 to 0.99 over all sub-regions at all lead times (up to 40 days) using five different RSOD definitions. For increasing lead times, forecasted RSODs tend to be earlier than the observed ones. Positive skill score values for almost all cases examined in all sub-regions indicate that the model outperforms the observed climatology in predicting the RSOD at sub-seasonal lead times (~28–35 days). However, the model is overall more skilful at shorter lead times. The choice of the RSOD criterion should be considered because it can significantly influence the model performance. The result of analysing the highest skill score for each sub-region at each lead time shows that criteria with higher 5-day rainfall thresholds tend to be more suitable for the forecasts at long lead times. However, the values of mean absolute error are approximately the same as the absolute values of the mean error, indicating that the prediction could be improved by a simple bias correction. The present study shows a large potential to use S2S forecasts to provide meaningful predictions of RSODs for farmers

Modelling the public health impact of male circumcision for HIV prevention in high prevalence areas in Africa

Background: Recent clinical trials in Africa, in combination with several observational epidemiological studies, have provided evidence that male circumcision can reduce HIV female-to-male transmission risk by 60% or more. However, the public health impact of large-scale male circumcision programs for HIV prevention is unclear. Methods: Two mathematical models were examined to explore this issue: a random mixing model and a compartmental model that distinguishes risk groups associated with sex work. In the compartmental model, two scenarios were developed, one calculating HIV transmission and prevalence in a context similar to the country of Botswana, and one similar to Nyanza Province, in western Kenya. Results: In both models, male circumcision programs resulted in large and sustained declines in HIV prevalence over time among both men and women. Men benefited somewhat more than women, but prevalence among women was also reduced substantially. With 80% male circumcision uptake, the reductions in prevalence ranged from 45% to 67% in the two "countries", and with 50% uptake, from 25% to 41%. It would take over a decade for the intervention to reach its full effect. Conclusion: Large-scale uptake of male circumcision services in African countries with high HIV prevalence, and where male circumcision is not now routinely practised, could lead to substantial reductions in HIV transmission and prevalence over time among both men and women

Host Cell Transcriptome Profile during Wild-Type and Attenuated Dengue Virus Infection

10.1371/journal.pntd.0002107PLoS Neglected Tropical Diseases73

The Evolution of Compact Binary Star Systems

We review the formation and evolution of compact binary stars consisting of white dwarfs (WDs), neutron stars (NSs), and black holes (BHs). Binary NSs and BHs are thought to be the primary astrophysical sources of gravitational waves (GWs) within the frequency band of ground-based detectors, while compact binaries of WDs are important sources of GWs at lower frequencies to be covered by space interferometers (LISA). Major uncertainties in the current understanding of properties of NSs and BHs most relevant to the GW studies are discussed, including the treatment of the natal kicks which compact stellar remnants acquire during the core collapse of massive stars and the common envelope phase of binary evolution. We discuss the coalescence rates of binary NSs and BHs and prospects for their detections, the formation and evolution of binary WDs and their observational manifestations. Special attention is given to AM CVn-stars -- compact binaries in which the Roche lobe is filled by another WD or a low-mass partially degenerate helium-star, as these stars are thought to be the best LISA verification binary GW sources.Comment: 105 pages, 18 figure

Search for heavy gauge W ' bosons in events with an energetic lepton and large missing transverse momentum at root s=13TeV

Peer reviewe

Search for massive resonances decaying in to WW,WZ or ZZ bosons in proton-proton collisions at root s=13 TeV

Peer reviewe

Mechanical stability of the CMS strip tracker measured with a laser alignment system

Peer reviewe