Complete genome sequence and architecture of crucian carp Carassius auratus herpesvirus (CaHV)

Crucian carp Carassius auratus herpesvirus (CaHV) was isolated from diseased crucian carp with acute gill hemorrhages and high mortality. The CaHV genome was sequenced and analyzed. The data showed that it consists of 275,348 bp and contains 150 predicted ORFs. The architecture of the CaHV genome differs from those of four cyprinid herpesviruses (CyHV1, CyHV2, SY-C1, CyHV3), with insertions, deletions and the absence of a terminal direct repeat. Phylogenetic analysis of the DNA polymerase sequences of 17 strains of Herpesvirales members, and the concatenated 12 core ORFs from 10 strains of alloherpesviruses showed that CaHV clustered together with members of the genus Cyprinivirus, family Alloherpesviridae.</p

Newton-Cartan Gravity and Torsion

We compare the gauging of the Bargmann algebra, for the case of arbitrary torsion, with the result that one obtains from a null-reduction of General Relativity. Whereas the two procedures lead to the same result for Newton-Cartan geometry with arbitrary torsion, the null-reduction of the Einstein equations necessarily leads to Newton-Cartan gravity with zero torsion. We show, for three space-time dimensions, how Newton-Cartan gravity with arbitrary torsion can be obtained by starting from a Schroedinger field theory with dynamical exponent z=2 for a complex compensating scalar and next coupling this field theory to a z=2 Schroedinger geometry with arbitrary torsion. The latter theory can be obtained from either a gauging of the Schroedinger algebra, for arbitrary torsion, or from a null-reduction of conformal gravity.Comment: 21 page

Evaluation of parameters affecting Agrobacterium-mediated transient expression in citrus

Abstract Agrobacterium-mediated transient expression assays are a convenient alternative to stable expression because they are simple, easy to perform, and achieve gene expression rapidly. This study investigated the factors affecting transient gene expression efficiency in citrus by observing the cryo-sectioning of leaf samples under a laser confocal microscope. These factors included the composition of the infiltration buffer, the Agrobacterium cell density, the leaf development stage, the incubation temperature, and plant genotype. The highest transient expression level of yellow fluorescent protein (YFP) was detected in Mexican lime (Citrus aurantifolia) on the third day after the intermediate-aged leaves were infiltrated with the improved infiltration buffer 1 (15 mmol L−1 2-(N-morpholino) ethanesulfonic acid, 10 mmol L−1 MgCI2, and 200 pmol L−1 acetosyringone), which had an optical density of 0.8 and was incubated at 22°C. Additionally, this transient expression assay was applied to other citrus genotypes. Of note, trifoliate orange (Poncirus trifoliata) and kumquat (Fortunella obovate) had higher expression efficiency than other six genotypes of the Citrus genus. Our study provides research basis for the selection of optimization strategies in transient gene expression and improves the method for available genome investigation in citrus

Negative regulation of transcription coactivator p300 by orphan receptor TR3

p300 regulates the transcriptional activity of a variety of transcription factors by forming an activation complex and/or promoting histone acetylation. Here, we show a unique characteristic of orphan receptor TR3 in negatively regulating the function of p300. TR3 was found to interact with p300 and inhibited the acetylation of transcription factors induced by p300, resulting in the repression of their transcriptional activity. Further analysis revealed that both a conserved transcriptional adapter motif (TRAM) in p300 and a specific sequence FLELFIL in TR3 were critical for their interaction. TR3 binding completely covered the histone acetyltransferase (HAT) domain of p300 and resulted in suppression of the HAT activity, as the p300-induced histone H3 acetylation and transcription were inhibited with the presence TR3. Furthermore, an agonist of TR3, a natural octaketide isolated from Dothiorella sp. HTF3 of an endophytical fungus, was shown to be a potent compound for inhibiting p300 HAT activity (IC50=1.5 mu g/ml) in vivo. More importantly, this agonist could repress the transcriptional activity of transcription factors, and proliferation of cancer cells. Taken together, our results not only delineate a novel transcriptional repressor function for TR3, but also reveal its modulation on p300 HAT activity as the underlying mechanism

Modularization of multi-qubit controlled phase gate and its NMR implementation

Quantum circuit network is a set of circuits that implements a certain computation task. Being at the center of the quantum circuit network, the multi-qubit controlled phase shift is one of the most important quantum gates. In this paper, we apply the method of modular structuring in classical computer architecture to quantum computer and give a recursive realization of the multi-qubit phase gate. This realization of the controlled phase shift gate is convenient in realizing certain quantum algorithms. We have experimentally implemented this modularized multi-qubit controlled phase gate in a three qubit nuclear magnetic resonance quantum system. The network is demonstrated experimentally using line selective pulses in nuclear magnetic resonance technique. The procedure has the advantage of being simple and easy to implement.Comment: to appear in Journal of Optics B: Quantum and Semiclassical Optic

Synthesis of single crystalline hexagonal nanobricks of LiNi 1/3Co1/3Mn1/3O2 with high percentage of exposed {010} active facets as high rate performance cathode material for lithium-ion battery

Single crystalline LiNi1/3Co1/3Mn1/3O 2 (LNCM) hexagonal nanobricks with a high percentage of exposed {010} facets are synthesized by using Ni1/3Co1/3Mn 1/3(OH)2 hexagonal nanosheets as both template and precursor, and exhibit excellent high rate performance as a cathode of lithium ion batteries. ? 2013 The Royal Society of Chemistry

An incremental learning framework to enhance teaching by demonstration based on multimodal sensor fusion

Though a robot can reproduce the demonstration trajectory from a human demonstrator by teleoperation, there is a certain error between the reproduced trajectory and the desired trajectory. To minimize this error, we propose a multimodal incremental learning framework based on a teleoperation strategy that can enable the robot to reproduce the demonstration task accurately. The multimodal demonstration data are collected from two different kinds of sensors in the demonstration phase. Then, the Kalman filter (KF) and dynamic time warping (DTW) algorithms are used to preprocessing the data for the multiple sensor signals. The KF algorithm is mainly used to fuse sensor data of different modalities, and the DTW algorithm is used to align the data in the same timeline. The preprocessed demonstration data are further trained and learned by the incremental learning network and sent to a Baxter robot for reproducing the task demonstrated by the human. Comparative experiments have been performed to verify the effectiveness of the proposed framework

Evasion of anti-growth signaling: a key step in tumorigenesis and potential target for treatment and prophylaxis by natural compounds

The evasion of anti-growth signaling is an important characteristic of cancer cells. In order to continue to proliferate, cancer cells must somehow uncouple themselves from the many signals that exist to slow down cell growth. Here, we define the anti-growth signaling process, and review several important pathways involved in growth signaling: p53, phosphatase and tensin homolog (PTEN), retinoblastoma protein (Rb), Hippo, growth differentiation factor 15 (GDF15), AT-rich interactive domain 1A (ARID1A), Notch, insulin-like growth factor (IGF), and Krüppel-like factor 5 (KLF5) pathways. Aberrations in these processes in cancer cells involve mutations and thus the suppression of genes that prevent growth, as well as mutation and activation of genes involved in driving cell growth. Using these pathways as examples, we prioritize molecular targets that might be leveraged to promote anti-growth signaling in cancer cells. Interestingly, naturally-occurring phytochemicals found in human diets (either singly or as mixtures) may promote anti-growth signaling, and do so without the potentially adverse effects associated with synthetic chemicals. We review examples of naturally-occurring phytochemicals that may be applied to prevent cancer by antagonizing growth signaling, and propose one phytochemical for each pathway. These are: epigallocatechin-3-gallate (EGCG) for the Rb pathway, luteolin for p53, curcumin for PTEN, porphyrins for Hippo, genistein for GDF15, resveratrol for ARID1A, withaferin A for Notch and diguelin for the IGF1-receptor pathway. The coordination of anti-growth signaling and natural compound studies will provide insight into the future application of these compounds in the clinical setting