Multiple linear and principal component regressions for modelling ecotoxicity bioassay response

The ecotoxicological response of the living organisms in an aquatic system depends on the physical, chemical and bacteriological variables, as well as the interactions between them. An important challenge to scientists is to understand the interaction and behaviour of factors involved in a multidimensional process such as the ecotoxicological response.With this aim, multiple linear regression (MLR) and principal component regression were applied to the ecotoxicity bioassay response of Chlorella vulgaris and Vibrio fischeri in water collected at seven sites of Leça river during five monitoring campaigns (February, May, June, August and September of 2006). The river water characterization included the analysis of 22 physicochemical and 3 microbiological parameters. The model that best fitted the data was MLR, which shows: (i) a negative correlation with dissolved organic carbon, zinc and manganese, and a positive one with turbidity and arsenic, regarding C. vulgaris toxic response; (ii) a negative correlation with conductivity and turbidity and a positive one with phosphorus, hardness, iron, mercury, arsenic and faecal coliforms, concerning V. fischeri toxic response. This integrated assessment may allow the evaluation of the effect of future pollution abatement measures over the water quality of Leça River

On the use of a single site approximation to describe correlation in pure metals

The magnetic properties of pure transition-like metals are discussed within the single site approximation, to take into account the electron correlation. The metal is described by two hybridized bands one of which includes the Coulomb correlation. Our results indicate that ferromagnetism follows from adequate values of the correlation and hybridization.Comment: 2 pages and 2 figure

Bacterial and microeukaryotic plankton communities in a semi-intensive aquaculture system of sea bass (Dicentrarchus labrax): a seasonal survey

The importance of microbial diversity and their role in the maintenance of fish health in aquaculture systems has been increasingly recognized in recent years. However, there is still a major knowledge gap regarding the ecology, composition and dynamics of microbial plankton assemblages during fish production. In this study, we aimed to investigate the seasonal dynamics and potential interactions of bacterial and microeukaryotic plankton communities in a semi-intensive aquaculture for European sea bass (Dicentrarchus labrax) cultured together with low density of gilthead sea bream (Sparus aurata) over a one-year period (January/2014 – November/2014). While the most abundant bacterial classes were Gammaproteobacteria, Flavobacteriia and Alphaproteobacteria; microeukaryotic communities were dominated by Ochrophyta, Chlorophyta and Ciliophora groups. Temperature and salinity were identified as significant drivers of the overall microbial community composition, which varied congruently along the seasons. However, while the dominant (more abundant) groups of bacteria occurred in the warmest months, the dominant groups of microeukaryotes occurred in the coldest months. There was also an inverse relationship between abundances of grazers and bacterial operational taxonomic units (OTUs). Overall, besides the potential effects of the abiotic parameters on the microbial plankton communities, the correlation between bacteria and microeukaryotic populations observed here may be an indication of trophic and/or metabolic interdependence between these two domains. Future studies should focus on the underlying mechanisms of this interdependence for a better understand of the impact of microeukaryotic communities on aquaculture bacterioplankton structure and function. In addition, this knowledge could be of interest in the development of microbial management strategies for aquaculture systems.publishe

Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia

In this study, the combination of culture enrichments and molecular tools was used to identify bacterial guilds, plasmids and functional genes potentially important in the process of petroleum hydrocarbon (PH) decontamination in mangrove microniches (rhizospheres and bulk sediment). In addition, we aimed to recover PH-degrading consortia (PHDC) for future use in remediation strategies. The PHDC were enriched with petroleum from rhizosphere and bulk sediment samples taken from a mangrove chronically polluted with oil hydrocarbons. Southern blot hybridization (SBH) assays of PCR amplicons from environmental DNA before enrichments resulted in weak positive signals for the functional gene types targeted, suggesting that PH-degrading genotypes and plasmids were in low abundance in the rhizosphere and bulk sediments. However, after enrichment, these genes were detected and strong microniche-dependent differences in the abundance and composition of hydrocarbonoclastic bacterial populations, plasmids (IncP-1 alpha, IncP-1 beta, IncP-7 and IncP-9) and functional genes (naphthalene, extradiol and intradiol dioxygenases) were revealed by in-depth molecular analyses [PCR-denaturing gradient gel electrophoresis and hybridization (SBH and microarray)]. Our results suggest that, despite the low abundance of PH-degrading genes and plasmids in the environmental samples, the original bacterial composition of the mangrove microniches determined the structural and functional diversity of the PHDC enriched.Deutsche Forschungsgemeinschaft [SM59/4-1, 4-2]; FAPERJ-Brazil; European Commission [003998, 211684]; Alexander-von-Humboldt-Stiftung; CONICET (Argentina)info:eu-repo/semantics/publishedVersio

High diversity of benthic cyanobacterial mats on coral reefs of Koh Tao, Gulf of Thailand

Benthic cyanobacterial mats are increasingly reported to cover major coral reef areas. Although suggestions have been made that cyanobacterial mats impair coral reef health in multiple ways, information is lacking regarding the distribution, morphotypical variation and bacterial species composition of these microbial mats. As such, this study aimed to (1) Reveal the bacterial community diversity and composition of different mat morphotypes, (2) Identify the most abundant community members and closely related organisms, (3) Assess to what extent, morphotype, colonized substrate (coral or abiotic substrate), depth, and site were significant predictors of bacterial composition. Data were collected on reefs surrounding the island of Koh Tao (Gulf of Thailand). A total of 201 mats from 16 different locations around the island were classified into eight distinct morphotypes. Of these, the bacterial communities of 44 mats, representing colour groups from multiple sites, were characterized using 16S rRNA gene high-throughput sequencing. Our data revealed that Proteobacteria, Cyanobacteria, Bacteriodetes and Planctomycetes were the four most abundant phyla and occurred in all samples. Abundant cyanobacterial zero-radius operational taxonomic units (ZOTUs) were closely related to prokaryotic sequences found in previous studies of coastal mats (98–100%) and were assigned to genera in the order Oscillatoriales, e.g. Hormoscilla, Okeania, and Oscillatoria. Abundant proteobacterial ZOTUs were assigned to orders in the classes Alpha- and Gammaproteobacteria, e.g. Rhodobacterales, Rhizobiales and Alteromonadales. Abundant Bacteriodetes ZOTUs were mainly assigned to the class Bacteroidia and order Cytophagales. Our results showed that mats consist of a diverse and variable bacterial consortium, with mat colour (morphotype), substrate type and geographic location only explaining a small part of the total variation in composition

Noncommutative massive Thirring model in three-dimensional spacetime

We evaluate the noncommutative Chern-Simons action induced by fermions interacting with an Abelian gauge field in a noncommutative massive Thirring model in (2+1)-dimensional spacetime. This calculation is performed in the Dirac and Majorana representations. We observe that in Majorana representation when $\theta$ goes to zero we do not have induced Chern-Simons term in the dimensional regularization scheme.Comment: Accepted to Phys. Rev. D; 9 pages, Revtex4, no figures, references added, minor improvements, Eq.31 correcte

A new methodology for assessment of pectus excavatum correction after bar removal in Nuss procedure: preliminary study

Purpose: The objective is to present a new methodology to assess quantitatively the impact of bar removal on the anterior chest wall, among patients with pectus excavatum who have undergone the Nuss procedure, and present a preliminary study using this methodology. Methods: We propose to acquire, for each patient, the surface of the anterior chest wall using a three-dimensional laser scanner at subsequent time points (short term: before and after surgery; long term: follow-up visit, 6 months, and 12 months after surgery). After surfaces postprocessing, the changes are assessed by overlapping and measuring the distances between surfaces. In this preliminary study, three time points were acquired and two assessments were performed: before vs after bar removal (early) and before vs 2-8 weeks after bar removal (interim). In 21 patients, the signed distances and volumes between surfaces were computed and the data analysis was performed. Results: This methodology revealed useful for monitoring changes in the anterior chest wall. On average, the mean, maximum, and volume variations, in the early assessment, were -0.1 +/- 0.1 cm, -0.6 +/- 0.2 cm, and 47.8 +/- 22.2 cm(3), respectively; and, in the interim assessment, were -0.5 +/- 0.2 cm, -1.3 +/- 0.4 cm, and 122.1 +/- 47.3 cm3, respectively (p < 0.05). Data analysis revealed that the time the bar was in situ was inversely and significantly correlated with postretraction and was a relevant predictor of its decrease following surgery (p < 0.05). Additionally, gender and age suggested influencing the outcome. Conclusions: This methodology is novel, objective and safe, helping on follow-up of pectus excavatum patients. Moreover, the preliminary study suggests that the time the bar was in situ may be the main determinant of the anterior chest wall retraction following bar removal. Further studies should continue to corroborate and reinforce the preliminary findings, by increasing the sample size and performing long-term assessments.FEDER funds, through the Competitiveness Factors Operational Programme (COMPETE), and by National funds, through the Foundation for Science and Technology (FCT), under the scope of the projects PTDC/SAU-BEB/103368/2008 and POCI-01-0145-FEDER-007038; and by the projects NORTE-07-0124-FEDER-000017 and NORTE-01-0145-FEDER-000013, supported by the Northern Portugal Regional Operational Programme (NORTE 2020), under the Portugal 2020 Partnership Agreement, through the European Regional Development Fund (FEDER)info:eu-repo/semantics/publishedVersio